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Figure 4 in Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
Figure 4. Ancestral distribution ranges reconstructed parsimoniously using PAUP*. Two representative character state (see legend for Fig. 3) optimizations are shown on the upper (delayed transition) and lower (accelerated transition) rows. Minimum F optimization was the same as delayed transition. The parsimonious reconstruction of character states allows an unrealistic all zero state. It does not give the character state at the root. In such cases the character state was manually optimized (asterisks).
Fig. 5 in Mitochondrial genomes of the genus Ephydatia Lamouroux, 1816: can palindromic elements be used in species-level studies?
Fig. 5 Phylogenetic relationships among freshwater sponges based on concatenated protein sequences of mitochondrial genes. Maximum likelihood tree obtained under the JTT+G+F model is shown. An
Fig. 4 in Mitochondrial genomes of the genus Ephydatia Lamouroux, 1816: can palindromic elements be used in species-level studies?
Fig. 4 The distribution of repetitive hairpin-forming elements in intergenic regions of mitochondrial genomes of Ephydatia fluviatilis (dark gray) and Ephydatia muelleri (white), (modified according to Lavrov 2010)
Fig. 1 in Mitochondrial genomes of the genus Ephydatia Lamouroux, 1816: can palindromic elements be used in species-level studies?
Fig. 1 Genetic map of Ephydatia fluviatilis mtDNA. Protein coding genes are in white, rRNA genes are in grey and tRNA genes are in black and are labelled by the one-letter code for their corresponding amino acid. The largest non-coding regions are indicated by circles with corresponding lengths. Sigmoidal curve indicates the lack of sequence data from the region
Fig. 2 in Diversification of Hemidactylus geckos (Squamata: Gekkonidae) in coastal plains and islands of southwestern Arabia with descriptions and complete mitochondrial genomes of two endemic species to Saudi Arabia
Fig. 2 Phylogenetic network resulting from the SplitsTree analysis. Species are highlighted with colors that match those in Figs. 1, 3, and 7. The branch leading to the outgroup has been truncated, which is indicated by its transparency. Bootstrap values are shown for major clades
Fig. 6 in Diversification of Hemidactylus geckos (Squamata: Gekkonidae) in coastal plains and islands of southwestern Arabia with descriptions and complete mitochondrial genomes of two endemic species to Saudi Arabia
Fig. 6 Paratypes of H. almakhwah sp. n. in life and the species' type locality. A – adult male NMP 76093/6; B – subadult NMP 76093/3; C – adult female NMP 76093/4; D – subadult NMP 76093/5; E and F – the type locality, a dry wadi SW of Al Ju'aydah (19.657°N, 41.567°E)
Fig. 4 in Diversification of Hemidactylus geckos (Squamata: Gekkonidae) in coastal plains and islands of southwestern Arabia with descriptions and complete mitochondrial genomes of two endemic species to Saudi Arabia
Fig. 4 Maps of the complete mitochondrial genomes of the holotypes of H. almakhwah sp. n., H. farasani sp. n., H. mandebensis, and H. ulii. Protein-coding genes are denoted with yellow and green annotations, rRNA genes with red annotations, tRNA genes with pink annotations, and the control region with orange annotations. Voucher
FIGURE 5 in The complete mitochondrial genome of the flat bug Aradacanthia heissi (Hemiptera: Aradidae)
FIGURE 5. The structural organization of the control region of A. heissi. The control region flanking genes srRNA, tRNAGln, tRNAIle, and tRNAMet are represented in grey boxes.
FIGURE 3 in The complete mitochondrial genome of the flat bug Aradacanthia heissi (Hemiptera: Aradidae)
FIGURE 3. Predicted secondary structure of the lrRNA in A. heissi. Roman numerals denote the conserved domain structure. The numbering system follows Gillespie et al. (2006) (established at the Comparative RNA Website). Dashed (–) indicate Watson-Crick base pairing and G-U base pairing,other non-canonical interactions are joined by a dot ().
FIGURE 4 in The complete mitochondrial genome of a tessaratomid bug, Eusthenes cupreus (Hemiptera: Heteroptera: Pentatomomorpha: Tessaratomidae)
FIGURE 4. Predicted secondary structure of the rrnS gene in the E. cupreus. Roman numerals denote the conserved domain structure. Dashed (-) indicate Watson-Crick base pairing and dot () indicate G-U base pairing. Structural annotations follow Fig. 3.
FIGURE 5. A. Paratype 2 in Another piece for the syllid puzzle: A new species from Japan and its mitochondrial genome reveal the enigmatic Clavisyllis (Phyllodocida: Syllidae) as a member of Eusyllinae
FIGURE 5. A. Paratype 2, anterior end; B. Paratype 1, anterior end; C. Paratype 2, anterior end, lateral view; D. Paratype 1, anterior end, lateral view; E. Paratype 1, anterior dorsal view; F. holotype, complete specimen. Visible structures are labelled: a = antennae, dc = dorsal cirrus with coloured tip, lp = lateral projetions, mnp = modified notopodium, nex = nuchal extensions, snc = natatory notochaetae, snl = sinuous nuchal lappets, p = palps.
FIGURE 2 in Another piece for the syllid puzzle: A new species from Japan and its mitochondrial genome reveal the enigmatic Clavisyllis (Phyllodocida: Syllidae) as a member of Eusyllinae
FIGURE 2. Mitochondrial genome. Blue: Protein coding genes; red: tRNA sequences; orange: ribosomal RNA sequences
Fig. 2 in The mitochondrial genomes of ladybird beetles and implications for evolution and phylogeny
Fig. 2. Heterogeneous sequence divergence within datasets including only the first, the second, the third codon positions or all codon positions. The obtained mean similarity score between sequences was represented by a colored square. The scores were ranging from 1, indicating full random similarity, to +1, non-random similarity. The darker red indicated the higher randomized similarities between pairwise sequence comparisons. Blue indicated the opposite. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 4 in The mitochondrial genomes of ladybird beetles and implications for evolution and phylogeny
Fig. 4. Maximum likelihood tree inferred from the dataset of PCG_AA using the predefined partition schemes under the best-fitting models selected by ModelFinder. Node numbers show bootstrap support values (left) and Bayesian posterior probability support values (right). Scale bar represents substitutions/site. ''–" indicates that the node is not recovered by BI analysis.
Fig. 3 in The mitochondrial genomes of ladybird beetles and implications for evolution and phylogeny
Fig. 3. Maximum likelihood tree inferred from the dataset of PCGRNA using the predefined partition schemes under the best-fitting models selected by ModelFinder. Node numbers show bootstrap support values (left) and Bayesian posterior probability support values (right). Scale bar represents substitutions/site. ''–" indicates that the node is not recovered by BI analysis.
FIGURE 7 in Mitochondrial genomes of three Mylabris (Pseudabris) species (Coleoptera: Meloidae, Mylabrini) and their phylogenetic implications
FIGURE 7. Secondary structure of the tRNAs of M. przewalskyi mitochondrial genome. The base differences among three Mylabris (Pseudabris) species are marked in green.
FIGURE 5 in Mitochondrial genomes of three Mylabris (Pseudabris) species (Coleoptera: Meloidae, Mylabrini) and their phylogenetic implications
FIGURE 5. Secondary structure of the tRNAs of M. hingstoni mitochondrial genome. The base differences among three Mylabris (Pseudabris) species are marked in green.
Supplymentary material for the paper entitled "Comparative Analysis Five Mitochondrial Genomes of the Subfamily Galerucinae (Coleoptera: Chrysomelidae) and Evolution of Control Regions Inferred from Phylogeny"
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Identification of SHOT1/MTERF18 binding sites on the mitochondrial genome of Arabidopsis thaliana
GEO Series GSE150262. Arabidopsis thaliana. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Massively parallel saturation genome editing of an essential mitochondrial targeting sequence (TileSeq)
GEO Series GSE232150. Homo sapiens. 36 samples. Type: Other.
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International Brain Laboratory public data
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OpenNeuro
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