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2,620 results for “Molecular Phylogeny”
FIGURE 4 in Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species
FIGURE 4. Detail of the best trees from the ML analyses of the combined (a), nrITS (b) and tef1 datasets (c) focusing on the brunneidiscus clade. Support Values (ML/MP/BY) are given on or below the branches. For each collection the collection number and country information are given. In the case of Canada (CAN), Russia (RU) and the United States of America (USA), the name of the province/federal district/state is also included.
FIGURE 1 in Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species
FIGURE 1. Best tree from the ML analyses of the combined dataset. Support Values (ML/MP/BY) are given on or below the branches.
FIGURE 3 in Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species
FIGURE 3. Detail of the best trees from the ML analyses of the combined (a), nrITS (b) and tef1 datasets (c) focusing on the pouzarianus clade. Support Values (ML/MP/BY) are given on or below the branches. For each collection the collection number and country information are given. In the case of Canada (CAN), Russia (RU) and the United States of America (USA), the name of the province/federal district/state is also included.
FIGURE 2 in Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species
FIGURE 2. Detail of the best trees from the ML analyses of the combined (a), nrITS (b) and tef1 datasets (c) focusing on the cervinus clade. Support Values (ML/MP/BY) are given on or below the branches. For each collection the collection number and country information are given. In the case of Canada (CAN), Russia (RU) and the United States of America (USA), the name of the province/federal district/state is also included.
FIGURES 73–76 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 73–76. Scanning electron micrographs of anterior end of parthenogenetic females of Fergusobia. 73: from E. planchoniana 'leafy' LBG. 76: from E. delegatensis TLG. 77: from E. tereticornis TLG. 78: from E. gomphocephala PG. Scale bars 2 µm.
FIGURES 80–88 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 80–88. Gall forms induced by the Fergusobia/Fergusonina mutualism. 80: PG on leaf and petiole on S. luehmannii. 81: SBG on M. quinquenervia. 82: axial bud 'stem' galls on C. tessellaris. 83: FBG on E. eugenioides. 84: TLG on E. camaldulensis. 85: Bud galls on E. leucoxylon. 86: Unilocular axial bud gall on M. decora. 87: PG on leaf of E. pauciflora. 88: PG on leaf of E. gomphocephala. Scale bars 80–83 = 5mm; 84 = 1cm; 85–88 = 5mm
FIGURES 69–72 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 69–72. Scanning electron micrographs of lateral fields of parthenogenetic females of Fergusobia. 69: from E. gomphocephala PG. 70: from E. tereticornis TLG. 71: from E. viminalis 'leafy' LBG. 72: from E. gomphocephala PG. Scale bars 69–71 = 5 µm; 72 = 2 µm.
FIGURES 1–22 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 1–22. Habitus drawings of parthenogenetic females from Fergusobia clades inferred from sequences of D2/ D3. 1: F. magna from C. tessellaris axial bud 'stem' galls. 2: from M. linariifolia SBG. 3: from E. camaldulensis TLG. 4: from E. camaldulensis FBG. 5: from E. microcarpa FBG. 6: from E. delegatensis TLG. 7: from E. fasciculosa style gall. 8: from E. gomphocephala PG. 9: from E. planchoniana 'leafy' LBG. 10: from E. tereticornis PG. 11: from S. luehmannii PG. 12: F. ptychocarpae from C. ptychocarpa FBG. 13: from A. floribunda TLG. 14: F. fisheri from E. leucoxylon FLG. 15: from Corymbia sp. PG. 16: from E. camaldulensis axial bud 'stem' galls. 17: F. quinquenerviae from M. quinquenervia SBG. 18: from M. nervosa BSG. 19: from M. quinquenervia 'rosette' gall. 20: from E. obliqua FBG a. 21: from E. obliqua FBG b. 22: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
FIGURES 62–68 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 62–68. Shield forms found on third stage larvae of Fergusonina fly species associated with Fergusobia nematodes. "Bars" form. 62: from E. delegatensis TLG. 63: from Eucalyptus sp. FLG. "Dots" form. 64: from E. porosa PG. 65: from E. viminalis ULBG. 66: from E. odorata FLG. 67: from E. siderophloia FLG. "Plates with teeth" form. 68: from E. cosmophylla TLG. Scale bars 62–67 = 0.02mm; 68= 0.2mm.
FIGURES 44–61 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 44–61. Habitus drawings of preparasitic infective females from Fergusobia clades inferred from sequences of D2/D3. 44: F. magna from C. tessellaris axial bud 'stem' galls. 45: from M. linariifolia 46 from E. camaldulensis TLG. 47: from E. camaldulensis FBG. 48: from E. microcarpa FBG. 49: from E. delegatensis TLG. 50: from E. fasciculosa style gall. 51: from E. gomphocephala PG. 52: from E planchoniana 'leafy' LBG. 53: from S. luehmannii PG. 54: F. ptychocarpae from C. ptychocarpa FBG. 55: from A. floribunda TLG. 56: F. fisheri from E. leucoxylon FLG. 57: from Corymbia sp. PG. 58: from E. camaldulensis axial bud 'stem' galls. 59: F. quinquenerviae from M. quinquenervia SBG. 60: from M. quinquenervia 'rosette' gall. 61: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
FIGURES 23–43 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 23–43. Habitus drawings of males from Fergusobia clades inferred from sequences of D2/D3. 23: F. magna from C. tessellaris axial bud 'stem' galls. 24: from M. linariifolia ULBG. 25: from E. camaldulensis TLG. 26: from E. camaldulensis FBG. 27: from E. microcarpa FBG. 28: from E. delegatensis TLG. 29: from E. fasciculosa style gall. 30: from E. gomphocephala PG. 31: from E. planchoniana 'leafy' LBG. 32: from E. tereticornis PG. 33: from S. luehmannii PG. 34: F. ptychocarpae from C. ptychocarpa FBG. 35: from A. floribunda TLG. 36: F. fisheri from E. leucoxylon FLG. 37: from Corymbia sp. PG. 38: from E. camaldulensis axial bud 'stem' galls. 39: F. quinquenerviae from M. quinquenervia SBG. 40: from M. quinquenervia 'rosette' gall. 41: from E. obliqua FBGa. 42: from E. obliqua FBGb. 43: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
FIGURE 1 in Molecular phylogeny and divergence time estimates of Penaeid Shrimp Lineages (Decapoda: Penaeidae)
FIGURE 1. ML phylogeny for penaeidae family, reconstructed using 16S, COI and concatenated sequences. For 16S and COI phylogenies only ML bootstrap values are shown. For the concatenated sequence tree bootstrap support values for ML, BI, and NJ are shown near interior branches. Bootstrap values lower than 50 are not shown. Species with circles, triangles and squares belong respectively to Penaeini, Trachypenaeini, and Parapenaeini clades, following Burkenroad's (1953) traditional classification. The Penaeini clade (bold branches) was used in divergence times estimates. Letters A, B and C are references for the nodes where time constrains were set.
FIGURE 1 in Combined molecular and morphological phylogeny of Ephemerellinae (Ephemerellidae: Ephemeroptera), with remarks about classification
FIGURE 1. Combined data (molecular and morphology) mixed model Bayesian analysis topology. The tree represents the 50% consensus of all of the Bayesian topologies that were selected outside of the "burn in". For each node the five squares represent sensitivity of the data to different approaches of analysis. The first square is colored gray when the Bayesian posterior probability was greater than 90. The second square is grayed when the node is supported in the maximum likelihood (ML) tree. The third square is grayed when the node is supported in the maximum parsimony (MP) tree. The fourth square is grayed to represent a greater than 50% bootstrap value. The fifth square is grayed when the node is supported in the maximum parsimony analysis of the morphological data.
FIGURE 2. Four additional trees resulting from analyses. A in Combined molecular and morphological phylogeny of Ephemerellinae (Ephemerellidae: Ephemeroptera), with remarks about classification
FIGURE 2. Four additional trees resulting from analyses. A. Most Parsimonious tree from maximum parsimony analysis of combined data (one most parsimonious topology; Length = 5437). B. Most likely tree from maximum likelihood analysis of molecular data (Score = 31976.70842). C. Majority-rule consensus of most parsimonious trees from maximum parsimony analysis of molecular data (6 most parsimonious trees found; Length = 5357). D. Majority-rule consensus of most parsimonious trees from maximum parsimony analysis of morphological data (Length = 63).
Figure 94 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figure 94. Chronogram with the molecular dating for the genus Ixchela using the lognormal relaxed clock model. Bars at nodes indicate the 95% highest posterior density interval (HPD) to each tmrca (time of the most recent common ancestor). Numbers on bars indicate the mean age for each node in millions of years (Mya). Gradient of colours indicates ages of nodes, from the older nodes (darker) toward more recent nodes (lighter).
Figure 95 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figure 95. Biogeographical provinces of Mexico following the scheme of Morrone (2004, 2005), showing the distribution of the genus Ixchela. Red background colour indicates the Mexican Montane biotic component and its provinces: 1, Sierra Madre Occidental (no records of Ixchela); 2, Transmexican Volcanic Belt (species recorded in green); 3, Sierra Madre Oriental (species recorded in yellow); 4, Cuenca del Balsas (no records of Ixchela); 5, Sierra Madre del Sur (species recorded in dark blue). Yellow background colour indicates the Province of Chiapas (species recorded in light blue) which belongs to the Mesoamerican biotic component and is extended toward mountainous zones of Central America (Guatemala, Honduras, El Salvador and Nicaragua).
Figure 93 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figure 93. Majority consensus tree derived from the Bayesian analysis using the (morphology + CO1 + 16S) data set. Numbers above branches indicate posterior probabilities. Numbers below branches: (+) indicates clades found with PA/ Jackknife support values and/or with significant PA/Bremer support values. Black squares below branches indicate clades found with PA using different concavity values (K) using implied weighting; white squares indicate clades not recovered with some concavity values (see inset). Numbers and arrows indicate clades that are discussed in the text.
Figure 91 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figure 91. Consensus tree of the five most parsimonious trees obtained by the morphological cladistic analysis with equal weighting of characters (L = 59, CI = 0.72, RI = 0.84). Black squares indicate synapomorphic or apomorphic states, whereas white squares indicate homoplastic character states. Small numbers above squares indicate character number; small numbers below squares indicate character state. Larger numbers above branches indicate Jackknife support values; larger numbers below branches indicate Bremer support values. Black squares below branches indicate clades recovered with PA using different concavity values (K) using implied weighting; white squares indicate clades not recovered with some concavity values (see inset).
Figure 92 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figure 92. Majority consensus tree derived from the Bayesian analysis using the morphology + CO1 data set. Numbers above branches indicate posterior probabilities. Numbers below branches: (+) indicates clades found with PA/Jackknife support values and/or with statistically significant PA/Bremer support values. Black squares below branches indicate clades found with PA using different concavity values (K) using implied weighting; white squares indicate clades not recovered with some concavity values (see inset). Numbers and arrows indicate clades that are discussed in the text.
Figures 79–89 in Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene
Figures 79–89. Ixchela tlayuda sp. nov. Male: 79, 80, Habitus, lateral and dorsal views, respectively. 81, Carapace and chelicerae, frontal view. 82, Chelicerae, frontal view. 83–84, Left palp, retrolateral and prolateral views, respectively. 85, Chelicera, lateral view. Female: 86, Epigynum, left lateral view. 87, Epigynum, ventral view. 88, Epigynum, dorsal view. 89, Epigynum, frontal view. Scale bars: 0.5 mm (Figs 82, 85, 88), 1 mm (Figs 79–81, 83, 84, 86, 87, 89).
ScienceDex guides
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.