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opencc-by-4.0Dec 2017View details →

Fig. 4 in Haemoprotozoa: Making biological sense of molecular phylogenies

Fig. 4. Phenotypic characters mapped against broad molecular phylogenies of trypanosomatid haemoflagellates. Molecular phylogenetic relationships are indicated on the left as a consensus (macro-evolutionary) tree derived from multiple studies cited within the text.

opencc-zeroJan 2024View details →

Linked collectors and determiners for: A new species of Polietina (Diptera: Muscidae) from South America, with an updated phylogeny of the genus and a review of species' identity in GenBank.

Natural history specimen data linked to collectors and determiners held within, "A new species of Polietina (Diptera: Muscidae) from South America, with an updated phylogeny of the genus and a review of species' identity in GenBank". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/a30b0cfb-72ef-49cf-b982-d1a7f7be5027">https://bionomia.net/dataset/a30b0cfb-72ef-49cf-b982-d1a7f7be5027</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/a30b0cfb-72ef-49cf-b982-d1a7f7be5027">https://gbif.org/dataset/a30b0cfb-72ef-49cf-b982-d1a7f7be5027</a>. Formatted as a Frictionless Data package.

opencc-zeroJul 2024View details →

Linked collectors and determiners for: Review and phylogeny of Cyrtomenus Amyot & Serville (Hemiptera: Cydnidae: Cydninae) based on morphological characters.

Natural history specimen data linked to collectors and determiners held within, "Review and phylogeny of Cyrtomenus Amyot & Serville (Hemiptera: Cydnidae: Cydninae) based on morphological characters". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/035c358a-0715-41a2-a6c9-27ebad4ea273">https://bionomia.net/dataset/035c358a-0715-41a2-a6c9-27ebad4ea273</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/035c358a-0715-41a2-a6c9-27ebad4ea273">https://gbif.org/dataset/035c358a-0715-41a2-a6c9-27ebad4ea273</a>. Formatted as a Frictionless Data package.

Fig. 5. Maximum likelihood tree for 10 in Molecular phylogeny of Indonesian Zeuzera (Lepidoptera: Cossidae) wood borer moths based on CO I gene sequence

Fig. 5. Maximum likelihood tree for 10 species of Zeuzera based on all substitution of CO I gene (Bootstrap support are shown ath the nodes).

Fig. 3 in Molecular phylogeny of Indonesian Zeuzera (Lepidoptera: Cossidae) wood borer moths based on CO I gene sequence

Fig. 3. Scatter plots of pairwise seqeunce divergence based on K2P model versus Transition/Transversion (Ts/Tv).

Fig. 4. A 50 in Molecular phylogeny of Indonesian Zeuzera (Lepidoptera: Cossidae) wood borer moths based on CO I gene sequence

Fig. 4. A 50% majority-rule consensus tree based on all substitutions of CO I gene (Bootstrap support are shown only for the nodes which have value>50%.

Fig. 1 in Molecular phylogeny of Indonesian Zeuzera (Lepidoptera: Cossidae) wood borer moths based on CO I gene sequence

Fig. 1. Cladogram of Zeuzera (Schoorl, 1990) (all the numbers showed in each branch are apomorphies charactes that are listed in Table 1).

opencc-by-4.0Feb 2014View details →

Fig. 3. Maximum likelihood tree constructed from 38 nuclear rDNA ITS1 and ITS2 sequences from Apiaceae genus Daucus and relatives using a in Molecular phylogeny of Daucus (Apiaceae): Evidence from nuclear ribosomal DNA ITS sequences

Fig. 3. Maximum likelihood tree constructed from 38 nuclear rDNA ITS1 and ITS2 sequences from Apiaceae genus Daucus and relatives using a transition/transversion rate ratio of 1.6. Branch lengths are proportional to the number of expected nucleotide substitutions per site.

opencc-by-4.0Feb 2014View details →

Fig. 2 in Molecular phylogeny of Daucus (Apiaceae): Evidence from nuclear ribosomal DNA ITS sequences

Fig. 2. Neighbor-joining tree inferred form the analysis of 39 nuclear rDNA ITS1 and ITS2 sequences from Apiaceae genus Daucus and its relatives using a transition/transversion rate ratio of 1.6. Branch lengths are proportional to distance estimated from the two parameter method of Kimura. Numbers at nodes indicate bootstrap values for 100 replicate analyses. On this tree, bootstrap values <20% are not indicated.

opencc-by-4.0Feb 2014View details →

Fig. 1 in Molecular phylogeny of Daucus (Apiaceae): Evidence from nuclear ribosomal DNA ITS sequences

Fig. 1. Strict consensus of 11 parsimony trees derived from equally-weighted parsimony analysis of combined nuclear DNA ITS1 and ITS2 sequences from Daucus and its relatives using all unambiguously-aligned positions (CIs with and without uninformative characters= 0.6613 and 0.5817; RI=0.8387). From the left to the right, names of taxa, sections, and clades are given. Numbers above the nodes indicate the number of times a monophyletic group occurred in 100 bootstrap replicates; AutoDecay values are given below.

opencc-by-4.0Aug 2018View details →

Fig. 1 in Phylogeny of Hepatocystis parasites of Australian flying foxes reveals distinct parasite clade

Fig. 1. Concatenated analysis. Bayesian analysis of concatenated alignment of two mitochondrial (cytb, cox1), one apicoplast (clpC), and two nuclear genes (ef2, PAT) rooted with Leucocytozoon species from birds. Posterior probabilities are given. (A) Clade of Hepatocystis presents the sister clade to mammalian Plasmodium (Plasmodium) and Plasmodium (Vinckeia) species. The parasite sequences of the study from Australian Pteropus species, form one distinct clade (together with three sequences from Asian Pteropus species) (highlighted in yellow). The sister clade contains all sequences from primate Hepatocystis (highlighted in blue), the African bat Hepatocystis parasites (highlighted in red) and sequences of Hepatocystis from Asian flying foxes of the genus Cynopterus and Hipposideros. (B) section from (A), uncollapsed Hepatocystis clades. Sequences of the study are highlighted in bold. Australasian Hepatocystis sequences from Pteropus hosts fall in two subclades and no host species specificity is apparent as the sequences from all three-host species group in two main clades.(For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

opencc-by-4.0Aug 2018View details →

Fig. 2 in Phylogeny of Hepatocystis parasites of Australian flying foxes reveals distinct parasite clade

Fig. 2. Gametocyte blood stages of haemosporidian parasites of Australian bats. Giemsa-stained thin blood smears were investigated using oil immersion with a light microscope at a magnification of 1,000×. A) ex P. conspicillatus (P_conspicillatus_L2, A1 = macro-, A2 = microgametocyte), B) ex P. conspicillatus (P_conspicillatus_L15, B1 = macro-, B2 = microgametocyte), C) ex P. conspicillatus (P_conspicillatus_L20, C1+2 = early gametocyte stages, C3 = macro-, C 4 = microgametocyte), D) ex P. scapulatus (P_scapulatus_A4, D 1+2 = micro-, D 3+4 macrogametocytes), E) ex P. scapulatus (P_scapulatus_A3, E1+2 = macrogametocytes, E3+4 = unusual microgametocytes) F) ex P. alecto (P_alecto_L8, F1+2 = microgametocytes G) ex P. alecto (P_alecto_L5, G1 = macrogametocyte, G2 = microgametocyte), ''ex'' denotes that parasites were isolated from the respective host species. Bar = 5 μm.

Fig. 14 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 14. Phylogeny of Mesobiotus Vecchi, Cesari, Bertolani, Jönsson, Rebecchi & Guidetti, 2016 based on concatenated 18S + 28S + ITS-2 + COI sequences. Numbers at nodes indicate Bayesian posterior probability values (BI, first values) and bootstrap values (ML, second values). Black dots indicate the nodes supported by values of 1.0/100% with both methods. Low support values (below 0.9 in BI and below 70% in ML) not shown. Scale bar and branch lengths refer to the Bayesian analysis.

Fig. 13 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 13. Mesobiotus vulpinus sp. nov., paratype (SPbU Tar_65), egg. A–B. Details of the egg processes, whire arrowheads indicate large pores, black arrowheads indicate small pores, SEM. Scale bars = 5 µm.

Fig. 12 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 12. Mesobiotus vulpinus sp. nov., egg. A–D. Paratypes (SPbU Tar_65). A, C. Total view of the eggs, SEM. B, D. Details of the egg surface, SEM. Note the difference in the degree of development of small tubercles and numerous small pores on the egg surface. Scale bars: A–B = 20 µm; C–D = 5 µm.

Fig. 11 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 11. Mesobiotus vulpinus sp. nov., paratype (SPbU 320(6)), egg. A. Total view of the egg, PhC. B. Egg processes with small bulbous process between them, black arrowhead, DIC. C–D. Details of the egg surface, black arrowheads indicate small bulbous processes, PhC (C), DIC (D). E. Bifurcated egg process, PhC. F. Egg process with "bubble", black arrowhead, PhC. G–H. Optical sections of the egg process basal part, white arrowheads indicate a pore, DIC. Scale bars: A = 20 µm; B–H = 10 µm.

Fig. 9 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 9. Mesobiotus vulpinus sp. nov., bucco-pharyngeal apparatus. A–G. Holotype (SPbU 320(10)). H. Paratype (SPbU 320(1)). A. Total dorso-ventral view of the bucco-pharyngeal apparatus, PhC. B–C. Placoids, black arrowheads indicate the preterminal constriction of the third macroplacoid, PhC (B), DIC (C). D–G. Oral cavity armature (D–E = dorsal view, F–G = ventral view), PhC (D, F), DIC (E, G). H. Oral cavity armature with fragmented medio-ventral ridge, PhC. Scale bars: A = 20 µm; B–H = 10 µm.

Fig. 10 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 10. Mesobiotus vulpinus sp. nov., claws. A, C, F–G. Paratype (SPbU Tar_33). B. Paratype (SPbU 320(1)). D, H. Holotype (SPbU 320(10)). E. Paratype (SPbU 320(5)). A. Inner surface of leg III, white arrowhead indicates indistinctly marked pulvinus, SEM. B. Claws of leg II, black arrowhead indicates bar-like cuticular thickening, PhC. C. Claws of leg III, SEM. D. Claws of leg I, focused on bar-like cuticular thickening, black arrowhead, white arrowhead indicates the zone of dot-like sculpture, PhC. E. Claws of leg IV, black arrowheads indicate cuticular sculpture around the claw bases, PhC. F. Claws of leg IV, SEM. G. Lunules of claws of leg IV, SEM. H. Leg IV, focused on horseshoe-like structure, white arrowhead, black arrowhead indicates cuticular sculpture around the claw base, PhC. Scale bars: A–B, D–E, H = 10 µm; C, F–G = 5 µm.

Fig. 8 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 8. Mesobiotus vulpinus sp. nov., cuticular sculpture and oral cavity armature (OCA). A–B, E–F. Paratype (SPbU Tar_33). C–D. Holotype (SPbU 320(10)). A. High magnification of the sculpture of the dorsal body surface, SEM. B. Dot-like sculpture on the external surface of leg III, SEM. C. Dotlike sculpture on the external surface of leg III, PhC, black arrowhead inticates the zone of sculpture. D. Dot-like sculpture on the dorsal side of hind leg, PhC. E. Dot-like sculpture on the dorsal side of hind leg, SEM, white arrowhead indicates the zone of sculpture. F. Mouth opening with dorsal OCA visible, SEM, white arrow indicates the first band of teeth, white arrowhead indicates the dorsal crests of the third band of teeth. Scale bars A–B, F = 2 µm; C–E = 5 µm.

Fig. 7 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus

Fig. 7. Mesobiotus vulpinus sp. nov., total view. A. Paratype, ♀ (SPbU 420(1)). Dorso-ventral view, PhC. B. Paratype (SPbU Tar_65). Ventro-lateral view in SEM. Scale bars = 50 µm.