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Secchi depth data and discrete depth profiles of water temperature, dissolved oxygen, conductivity, specific conductance, photosynthetic active radiation, oxidation-reduction potential, and pH for Beaverdam Reservoir, Carvins Cove Reservoir, Falling Creek Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2013-2025
Discrete depth profiles of water temperature, dissolved oxygen, oxidation-reduction potential, conductivity, specific conductance, and pH were collected with multiple handheld water quality probes and discrete depth profiles of photosynthetically active radiation (PAR) were collected with a LI-COR underwater light meter from 2013 to 2025 in five drinking water reservoirs in southwestern Virginia, USA. These reservoirs are: Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), Falling Creek Reservoir (Vinton, Virginia), Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir (Salem, Virginia). Beaverdam, Carvins Cove, Falling Creek, and Spring Hollow Reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia, and Gatewood Reservoir is a drinking water source for the Town of Pulaski, Virginia. All discrete depth profiles were collected on approximately 1-meter intervals. The data package consists of two datasets: 1) Secchi depth data; and 2) discrete depth profiles of multiple water quality variables measured by handheld sensors. The Secchi data and discrete depth profiles were measured at the deepest site of each reservoir adjacent to the dam, as well as other in-reservoir sites. Handheld sensor measurements were also collected at a gauged weir on the primary inflow tributary, other inflows, and outflows at Falling Creek Reservoir; inflows and outflows at Beaverdam Reservoir; and inflows at Carvins Cove Reservoir. In 2021, YSI handheld data were also collected from a littoral site in Beaverdam Reservoir. In 2025, YSI handheld data were collected monthly from June to October from nine littoral sites around the perimeter of Falling Creek Reservoir. From 2024 - 2025, additional within-reservoir depth profiles were collected in Carvins Cove Reservoir and multiple sites. Data were collected approximately fortnightly in the spring months (March - Ma
Hydrodynamic Model Output Used to Evaluate Chinook Salmon Movements and Distribution in the South Delta
This data release includes the output variables extracted from the UnTRIM Bay-Delta hydrodynamic model (hydrodynamic model) for use in evaluating the effects of hydrodynamics on the behavior of acoustically-tagged juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin Delta. Work was funded by State Water Contractors (SWC) and completed by Anchor QEA; FlowWest, LLC; and University of Washington under a SWC 2023 Science Plan grant (study name Evaluation of the Influence of State Water Project and Central Valley Project on Chinook Salmon Movements and Distribution in the South Delta), contracted by SWC. Not all the hydrodynamic model output variables in the output provided with this memorandum were used in the final fish models used to analyze Chinook Salmon responses. Model output for additional variables and locations were included for completeness and to make these output files more broadly useful to researchers interested in other locations or variables in the Sacramento-San Joaquin Delta. Hydrodynamic model simulations were conducted for 2010, 2011, 2012, 2013, 2014, 2015, 2016, and 2017, with hydrodynamic model output variables provided at mostly the same locations for each period simulated. The years 2011 through 2016 were simulated previously for a prior project and model output provided through the Environmental Data Initiative (edi.1124.1). Files for these years were recreated from the prior simulations for this project to add an output location. Additional locations were added to the 2010 and 2017 simulations for the 2010 and 2017 hydrophone arrays, and thus 2010 and 2017 include additional model output, relative to 2011 through 2016. The model simulation for each year spanned the full period of Chinook Salmon detections in the telemetry data collected during that year.
Data from: Invasion timing affects multiple scales, metrics and facets of biodiversity outcomes in ecological restoration experiments (Missouri, 2009-2016)
Vegetation responses to experimental ecological restoration treatments at Tyson Research Centre of Washington University in Missouri, USA. These data include species-level cover responses to various factorial restoration treatments. Treatments were applied starting in 2009 and were measured in 2016. Treatment responses reflect these long term responses, but the dataset is comprised to one time point.
Double-crested Cormorant (Nannopterum auritum) nesting colony and environmental data in Biscayne National Park, Florida, USA (2009-2024)
Double-crested Cormorant (DCCO) nesting data were collected from colonies in Biscayne National Park (BISC) by the South Florida/Caribbean Inventory and Monitoring Network as part of the Colonial Nesting Birds vital sign monitoring program. Nesting data collected from 2010 to 2023 are included in this dataset. Salinity, chlorophyll, and ammonia data were acquired from sites monitored in the Surface Water Quality Monitoring Program managed by the Miami-Dade County Division of Environmental Management’s Department of Regulatory and Economic Resources (RER-DERM). Seagrass data were acquired from sites monitored by RER-DERM as a part of the Biscayne Bay Benthic Habitat Monitoring Program. Mangrove fish and epifauna data were acquired from the U.S. National Oceanic and Atmospheric Administration's (NOAA) Integrated Biscayne Bay Ecological Assessment and Monitoring Project (IBBEAM). Environmental data (salinity, chlorophyll, ammonia, seagrass, mangrove fish, and epifauna) were manipulated in order to examine the relationship between DCCO nesting trends and the BISC ecosystem. This data package is completed. Code included is pertinent to the methods described in "Assessment of ecosystem health in Biscayne National Park, Florida according to Double-crested Cormorant (Nannopterum auritum) nesting trends" by Taylor et al. 2025, currently submitted to and under review by Ecological Indicators.
Bridging data silos to holistically model plant macrophenology data, Contiguous United States, 2013-2021
Phenological responses to climate change can have dire implications for ecosystem functions. Despite the availability of diverse datasets (e.g., herbarium specimens, community science initiatives, observatory networks, and remote sensing), holistic modeling of plant events across scales remains limited due to fragmented data and disciplinary silos. This is an important topic that has been overdue for attention. Here we use two different plant phenological datasets, herbarium and USA-NPN (includes NEON), to look at the overall flowering period of Acer rubrum between 2013-2021, distributed across the Contiguous United States. We harmonize the data to demonstrate its use to leverage the spatial and biological organizational scales at which these data are captured. Both datasets include phenophase status (presence or absence) across the flowering season (day of year). These harmonized data exemplify their usefulness to holistically model plant phenology using an integrated species distribution model framework, while accounting for the heterogeneity across data types (presence-only, presence-absence). These data can be used to explore general questions about intraspecific synchrony of Acer rubrum flowering phenology across populations, or questions with coarser scales of interest (e.g., community level, global scales).
Dataset on tree diversity metrics and aboveground carbon storage in Southeastern U.S. oak-pine forests, 2009–2019
This dataset contains measurements of tree structural and taxonomic diversity, stand attributes, and aboveground carbon storage from mixed oak-pine forests in Florida, Georgia, and Alabama, located in the southeastern United States. Data were collected from 946 mixed oak-pine, and 7224 longleaf-slash pine and oak-pine Forest Inventory and Analysis (FIA) plots respectively spanning the years 2009 to 2019. Variables include aboveground carbon, aboveground biomass, tree density, basal area, stand age, and diversity metrics such as Shannon indices for tree species and diameter-based structural classes. Functional diversity metrics—including functional dominance and functional divergence—are also included. These data were used to support a published study examining the interactive effects of diversity metrics on carbon storage using structural equation modeling. The geographic coverage represents humid subtropical forest regions of the southeastern U.S.
Long-term soil properties after different biochar feedstock treatments in a Southwest Virginia Pasture, 2024
Biochar is an agricultural amendment that can improve soil health and promote carbon (C) sequestration. Effects of biochar can vary and depend on the biochar feedstock, method of production, soil conditions, and amendment method and frequency. These data include soil physicochemical properties from plots amended with hay, softwood, and hardwood biochar types produced under similar conditions (479°C – 522°C for 3.5-10.2 hours) with and without a nitrogen addition (porcine blood meal) in a randomized complete block design after 4.5 years. Plots were first established at the Virginia Tech Catawba Sustainability Center in Catawba, VA in June of 2019 and sampled in March 2024. Soil measurements include total nitrogen, total carbon, carbon:nitrogen ratios, gravimetric moisture, pH, electrical conductivity, dissolved inorganic nitrogen (NO3 and NH4), bulk density, and moisture from bulk density measurements. These data contribute to a long-term understanding of different biochar feedstock effects on Southwest Virginia pasture soils.
Time series of high-frequency profiles of depth, temperature, dissolved oxygen, conductivity, specific conductance, chlorophyll a, turbidity, pH, oxidation-reduction potential, photosynthetically active radiation, colored dissolved organic matter, phycocyanin, phycoerythrin, and descent rate for Beaverdam Reservoir, Carvins Cove Reservoir, Falling Creek Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2013-2025
Depth profiles of water biogeochemical properties were collected with SeaBird Electronics (SBE) Conductivity, Temperature, and Depth (CTD) profilers from 2013-2025 at five drinking water reservoirs in southwestern Virginia, USA. The study reservoirs are: Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), Falling Creek Reservoir (Vinton, Virginia), Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir (Salem, Virginia). Beaverdam, Carvins Cove, Falling Creek, and Spring Hollow Reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia, and Gatewood Reservoir is a drinking water source for the town of Pulaski, Virginia. The dataset consists of CTD depth profiles measured at the deepest site of each reservoir adjacent to the dam as well as other upstream reservoir sites. The profiles were collected approximately fortnightly in the spring months, weekly in the summer and early autumn, and monthly in the late autumn and winter. Beaverdam Reservoir, Carvins Cove Reservoir, and Falling Creek Reservoir were sampled every year in the dataset (2013-2025); Spring Hollow Reservoir was only sampled 2013-2017 and 2019; and Gatewood Reservoir was only sampled in 2016. Data availability differs across years due to additional sensors that have been added or replaced over time. From 2013-2016, profiles were taken with a CTD equipped with an SBE 43 Dissolved Oxygen sensor and an ECO FLNTU sensor for turbidity and chlorophyll. From 2017-2025, profiles were taken with a CTD equipped with an SBE 43 Dissolved Oxygen sensor, an ECO FLNTU sensor for turbidity and chlorophyll, a PAR-LOG ICSW sensor for photosynthetically active radiation, and a SBE 27 pH and ORP (oxidation-reduction potential) sensor. In 2022 and 2023, profiles were also taken with an additional CTD equipped with an SBE 43 Dissolved Oxygen sensor; an ECO Triplet Scattering Fluorescence sensor for
Continuous stream CO2 and temperature data and sensor calibration grab samples from five NEON sites (CARI, COMO, KING, MART, WALK), August 2021-April 2024.
This package contains: 1) sensor-based measurements of dissolved CO2 concentration and temperature, and 2) dissolved CO2 concentration from grab samples that were used to calibrate the sensor data, collected at five stream sites in the NEON network (CARI- Caribou Creek, AK; COMO- Como Creek, CO; KING- Kings Creek, KS; MART- Martha Creek, WA; and WALK- Walker Branch, TN) between August 2021 - April 2024. The grab sample dataset contains a combination of samples collected by NEON (DP1.20097.001) and additional samples collected by project personnel. All samples were collected using the headspace equilibration method, and dissolved CO2 concentrations were calculated using the 'neonDissGas' R package (https://github.com/NEONScience/NEON-dissolved-gas). The sensor dataset contains CO2 concentrations measured with an eosGP CO2 gas probe, averaged to 15-minute intervals and corrected to align with grab sample concentrations using a site-specific grab versus sensor regression. Due to inaccuracies in the eosGP temperature data, we instead include the temperature data from NEON that was used to convert CO2 between units of ppmv and umol/L (DP1.20053.001 for CARI, KING, MART, and WALK, and data from the multiparameter sonde for COMO). All NEON data used in this data package references the RELEASE-2025 version of each data product (downloaded February 2025).
Seedling composition, growth, and dynamics in tropical rain forest, La Selva, Costa Rica (1983-1996)
Recruitment, growth, and survivorship of the regeneration stages of trees and lianas were studied in old-growth tropical rain forest at La Selva Biological Station of the Organization for Tropical Studies (OTS), near Puerto Viejo de Sarapiquí, Heredia Province, in the Caribbean lowlands of Costa Rica. A total of 48 permanent seedling transects each measuring 10 m x 0.5 m were established at random locations within three La Selva permanent forest inventory plots. The forest plots occupy contrasting landforms: Plot 1 (4.4 ha), old alluvial terrace; Plot 2 (4.0 ha), swamp forest and low hills; and Plot 3 (4.0 ha), steeply dissected terrain with residual volcanic soils. Seedling locations are georeferenced within the grid system of the permanent forest inventory plots, facilitating spatial analysis of seedling populations with respect to adult cohorts. Beginning in June 1983, all seedlings ≤ 0.5 m in height belonging to tree and liana species capable of reaching 10 cm diameter at breast height (dbh) at maturity were tagged, identified to species or morphospecies, mapped to the nearest cm, and measured in height to the nearest cm. Over a period of 18 months, a total of 6403 seedlings belonging to 167 species were tagged. Monitoring and re-measurement of all tagged individuals continued through November 1996. Data include 17 census dates over a period of 13.5 years. At the time of the final census, only 97 individuals (1.52% of the tagged seedlings) were still alive, representing 43 species (25.7% of the initial number). The largest surviving seedling had grown in height from 4 cm to 13 meters during the study period. This dataset on the regeneration stages in old-growth tropical rain forest in the La Selva permanent inventory plots forms a complement to the studies of long-term growth and demography of these species and assemblages at adult stages within the plots. Forest inventory data for trees and lianas ≥ 10 cm dbh in the permanent plots in which the seedling transec
St. Louis River Estuary Phytoplankton and Water Quality, 2022 - 2024
This data package supports the project Building a Collaborative Water Quality Monitoring Strategy for a Changing St. Louis River Estuary, funded by the National Estuarine Research Reserve System Science Collaborative. Led by the Lake Superior National Estuarine Research Reserve (LSNERR) and University of Minnesota’s Natural Resources Research Institute (NRRI) datasets include 2023–2024 water quality, phytoplankton, and winter dissolved oxygen observations from eight estuary “hotspot” locations. Sampling captured seasonal variability and cyanobacteria bloom events. All samples were collected using standardized field and laboratory protocols. Project details and associated products are available at: https://nerrssciencecollaborative.org/project/Ramage22. This dataset can be used to evaluate spatial and temporal patterns in water quality and phytoplankton dynamics, assess predictors of cyanobacterial blooms, and monitor winter under-ice hypoxia in the St. Louis River Estuary. It is well-suited for research on nutrient-bloom relationships, seasonal ecological shifts, and long-term monitoring strategy development.
Discharge time series for the primary inflow tributary entering Falling Creek Reservoir, Vinton, Virginia, USA 2013-2025
Discharge rates and water temperature of the primary inflow tributary into Falling Creek Reservoir (Vinton, Virginia, USA), also known as Tunnel Branch, were measured at a gauged weir on a 15-minute temporal resolution from May 2013 to December 2025. The gauged weir is located at 37.30858, -79.83494. Falling Creek Reservoir is a drinking water supply reservoir owned and managed by the Western Virginia Water Authority (WVWA). The dataset consists of water temperatures and discharge rates calculated from a pressure transducer deployed by the WVWA in a rectangular weir (15 May 2013 - 06 June 2019) and in a v-notched weir (07 June 2019 - 31 December 2025). From 07 June 2019 to 31 December 2025, water temperature and discharge data were also collected from a Virginia Tech-deployed (VT) pressure transducer installed in the same weir. The dataset is accompanied by a sensor maintenance log and quality assurance/quality control analysis scripts.
Perry et al. (2025) Data Package: Effects of diluted bitumen and remediation methods on lower trophic levels within boreal lake enclosures. Data were collected during 2019 at the IISD Experimental Lakes Area in Northwestern Ontario.
This data package corresponds to a research study by Perry et al. (2025) titled "The effects of diluted bitumen, the shoreline cleaner Corexit EC9580A, and bio-stimulation on the lower food web of a boreal lake, with a focus on natural phytoplankton communities." The study examines the effect of controlled spills of diluted bitumen and two remediation methods on lower trophic levels (phytoplankton, periphyton, zooplankton). The study was undertaken within shoreline enclosures within Lake 260 at the IISD Experimental Lakes Area during 2019. In addition to primary oil recovery using sorbent pads, the two secondary remediation methods: 1) enhanced monitoring natural recovery (eMNR) that included the biostimulation of microbial communities via a slow release nutrient fertilizer, and 2) a shoreline washing agent (SWA or SCA; Corexit 9580) used to increase oil removal from affected shorelines. This data package includes the response of perphyton and zooplankton.
Landscape of fear and safety summer 2025 data from University of Michigan Biological Station stream research facilities
Predator prey interactions are often driven by sensory cues and these cues play a role in non-consumptive effects. We are interested in the role that chemical cues (from predators) play in resource use by one of fish common prey, crayfish. We created flow through mesocosms and populated them with crayfish and various configurations of shelters and food. Then we presented to the crayfish predator cues (from large mouth bass) and measured behavioral responses from midnight to 4 am.
Altering pH changes competition dynamics between two crayfish species for both food and shelter resources
As climate change continues, alterations in abiotic variables within habitats will also change. One of the key variables for aquatic systems is pH. We were interested in how lowered pH altered the behavioral characteristics of two keystone species: Faxonius rusticus, a non-native crayfish in the upper midwest and Faxonius virilis, the native crayfish. We dosed size-matched individuals in separate tanks for four days and than placed these individuals in a flow through mesocosm to allow them to compete over food and shelter resources. Behavior was recorded from midnight to 4 am. Pairs of animals were exposed to pH levels varying from ambient (8.4) to 6.4. The experiment took place at the University of Michigan's Biological Station in northern Michigan in the United States.
Non-Targeted Screening of Organic Compounds in Environmental and Biological Matrices Related to Children's Environmental Exposure in South Florida, 2022-2024
This dataset provides a comprehensive list of chemicals relevant to children’s exposure from both dietary and non-dietary sources, across five environmental and biological matrices: drinking water (n = 206), food (n = 203), urine (n = 183), soil (n = 178), and household dust (n = 164). Samples were collected between May 2022 and June 2024 in Miami-Dade and Broward counties, Florida. A non-targeted screening approach using high-resolution mass spectrometry (HRMS) coupled with liquid chromatography was employed for analysis, with matrix-specific preparation methods: online solid-phase extraction (SPE) for water and urine, QuEChERS for food, and accelerated solvent extraction (ASE) for soil and dust. Analyses were conducted in full-scan mode under both positive and negative electrospray ionization to maximize compound detection coverage. Compound identification was performed using Compound Discoverer software, incorporating spectral and structural databases such as mzCloud, ChemSpider, ClassyFire, and MassList. Annotations were based on exact mass, mass error threshold (<5ppm), predicted molecular formula, retention time alignment, isotopic pattern fit, MS/MS spectral similarity, and match confidence levels derived from integrated spectral libraries and database scoring algorithms. Quality assurance was maintained through the use of quality control (QC) samples across all matrices and analytical batches. The integration of non-targeted analysis, matrix-optimized extraction, and rigorous QA/QC practices makes this dataset a valuable resource for environmental exposomics, chemical risk assessment, and evidence-based public health policy development.
Summertime methane and carbon dioxide emission rates and associated variables from a national-scale survey of 146 reservoirs in the United States, 2016-2023
Reservoirs are globally important sources of greenhouse gases, but the magnitude of their emissions is highly uncertain. Here we present data for 146 reservoirs from two surveys of reservoir methane and carbon dioxide emissions, one at the regional scale in the midwestern United States and one at the national scale in the conterminous United States, plus data from one reservoir in Washington and another in Puerto Rico. At all reservoirs, ebullitive and diffusive emissions and basic physiochemistry were measured at 15-70 locations during one 22 to 64-hour period during the summers of 2016-2023, with four reservoirs revisited a second time. Concomitant water chemistry measurements were also made at an index site. The dataset is comprised of two geospatial files and seven .csv files containing greenhouse gas emissions, water chemistry, morphology, and other relevant data. These data comprise the largest multi-reservoir emissions dataset ever assembled using consistent measurement methods.
Laboratory study on microplastic fiber size and concentration effects on leopard frog (Lithobates pipiens) tadpole survival, development, behavior, and parasite susceptibility
This dataset contains comprehensive raw data from a completed laboratory experiment conducted from May 24 to June 30, 2021 (with additional analysis performed in 2025), investigating the effects of polyester microplastic (MP) fiber exposure on northern leopard frog (Lithobates pipiens) tadpoles and their interactions with echinostome trematodes (Echinostoma sp.). Tadpole egg masses were collected from a wetland in Indiana, USA, and ramshorn snails (Helisoma trivolvis), serving as trematode hosts, were collected from Tioga County, New York, USA. The experiment was conducted under controlled laboratory conditions using a static-renewal design, exposing tadpoles to short (~0.24 mm) or long (~1.50 mm) polyester MP fibers at concentrations of 0, 10, or 40 µg L⁻¹ for 32 days, followed by controlled exposure to echinostome cercariae. The dataset includes measurements of tadpole mortality, developmental traits (mass, snout-to-vent length, Gosner stage), behavioral activity (number of moving pre- and post-parasite exposure), MP fiber ingestion, and susceptibility to trematode infection (metacercarial cyst counts in kidneys). These data provide a resource for studying the ecological and toxicological impacts of microplastics on amphibian health, and host-parasite dynamics in freshwater ecosystems, making the dataset suitable for researchers in ecotoxicology, and disease ecology. The dataset is complete, with no ongoing data collection, and is designed to support analyses of microplastic-mediated effects on aquatic organisms.
Impacts of microplastics on wetland ecosystem dynamics: a mesocosm study of trophic interactions and community responses, 2021-2025
This dataset documents a mesocosm experiment conducted to evaluate the ecological impacts of microplastics (MP) on wetland communities representative of eastern USA wetlands. The study focused on key organisms across trophic levels, including tadpoles (Lithobates pipiens), snails (Helisoma trivolvis), zooplankton (Daphnia pulex), phytoplankton, and periphyton communities, to assess the effects of three microplastic types (low-density polyethylene–LDPE, medium-density polystyrene–PS, and high-density polyester–PES) at two concentrations (1 mg/L and 5 mg/L), alongside a no-microplastic control. Experimental units consisted of 70 mesocosms (19-L buckets) with 10 replicates per treatment, established between July 1–15, 2021, at Binghamton University’s Ecological Research Facility. Response variables included survival and developmental traits (mass, snout-vent length, shell width) of tadpoles and snails, microplastic ingestion, zooplankton abundance, phytoplankton biomass (chlorophyll and phycocyanin concentrations), and periphyton mass. The dataset provides comprehensive measurements of community responses and water quality parameters, offering insights into the ecological consequences of microplastic pollution in wetland ecosystems. This dataset is suitable for researchers studying ecotoxicology, wetland ecology, and the impacts of anthropogenic pollutants on aquatic food webs.
Long-term record of lake and stream biogeochemistry from the Loch Vale Watershed, Rocky Mountain National Park, Colorado, USA: 1981-2024
The Loch Vale Watershed (LVWS) Project is a long-term research and monitoring program that addresses watershed-scale ecosystem processes, particularly as they respond to atmospheric deposition and climate variability. The LVWS is a 7-km2 high-altitude basin located within Rocky Mountain National Park in the Colorado Front Range (Colorado, United States of America). This dataset includes year-round measurements of physical water parameters, nutrients, major ions, trace metals, silica, and chlorophyll collected from lakes and streams within the LVWS basin. Related data entities: Scanned field notebooks from the Loch Vale Watershed Project from 1981-2023 are available via this published data release: https://www.sciencebase.gov/catalog/item/6723cba2d34e4f57573e8e45. Quality assurance reports from the Loch Vale Watershed Project are available for specific time periods and can be found at the following locations: 1983-1987: included in this data release under "Other Entities", file name LWVS_QAreport_1983to1987_Denning 1988: included in this data release under "Other Entities", file name LWVS_QAreport_1988_Denning 1989-1990: included in this data release under "Other Entities", file name LWVS_QAreport_1989to1990_Edwards 1995-1998: https://doi.org/10.3133/ofr99111 1999-2002: https://doi.org/10.3133/ofr20041306 2003-2009: https://doi.org/10.3133/ofr20111137 2010-2019: https://doi.org/10.3133/tm1D9 The most recent methods manual is included in full in this data release under "Other Entities", file name "LVWS Methods Manual". Please refer to this manual for the detailed methods.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.