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Fig. 4 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 4. Mesobiotus efa sp. nov., claws. A–B, E. Holotype (SPbU 275(72)). C. Paratype (SPbU 275(197)). D. Paratype (SPbU Tar_33). A. Claws of leg I, black arrowhead indicates bar-like cuticular thickening, PhC. B. Claws of leg II, black arrowhead indicates bar-like cuticular thickening, PhC. C. Claws of leg IV, white arrowhead indicates cuticular sculpture around the claw base, PhC. D. Claws of leg IV, white arrowhead indicates cuticular sculpture around the claw base, SEM. E. Claws of leg IV, black arrowhead indicates horseshoe-like structure, PhC. Scale bars: A–C, E = 10 µm; D = 5 µm.
Fig. 3 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 3. Mesobiotus efa sp. nov., bucco-pharyngeal apparatus.A. Holotype (SPbU 275(72)).B–G. Paratype (SPbU 275(197)). A. Total dorso-ventral view of the bucco-pharyngeal apparatus, black arrowheads indicate eyes, PhC. B–C. Placoids, PhC (B) and DIC (C). D–G. Oral cavity armature (D–E = dorsal view, F–G = ventral view), PhC (D, F), DIC (E, G). Scale bars: A = 10 µm; B–G = 5 µm.
Fig. 2 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 2. Mesobiotus efa sp. nov., cuticular sculpture. A–B, D. Paratype (SPbU Tar_33). C. Paratype (SPbU 275(197)). A. High magnification of the sculpture of the dorsal body surface, SEM. B. Dot-like sculpture on the external surface of leg III, SEM. C. Dot-like sculpture on the external surface of leg III, PhC, black arrowhead indicates dots. D. Dot-like sculpture on the dorsal side of hind legs, SEM. Scale bars: A–B, D = 2 µm; C = 5 µm.
Fig. 1 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 1. Mesobiotus efa sp. nov., total view. A. Holotype, ♀ (SPbU 275(72)). Dorso-ventral view, black arrowheads indicate eyes, PhC. B. Paratype (SPbU Tar_33). Ventral view in SEM. Scale bars = 50 µm.
Fig. 6 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 6. Mesobiotus efa sp. nov., paratype (SPbU Tar_33), eggs. A. Total view of the egg, SEM. B–C. Details of the egg surface, black arrowheads indicate pores on the egg processes, black arrow indicates wrinkles on the egg surface, SEM. D. Egg process, black arrowheads indicate pores, white arrowhead indicates terminal filaments, SEM. Scale bars: A = 20 µm; B = 5 µm; C–D = 2 µm.
Fig. 5 in Integrative description of two new species of the genus Mesobiotus (Eutardigrada, Macrobiotoidea) from Russia, with an updated phylogeny of the genus
Fig. 5. Mesobiotus efa sp. nov., eggs. A–E, H–I. Paratype (SPbU 275(210)). F–G. Paratype (SPbU 275(180)). A. Total view of the optical section of the embryonated egg, PhC. B. Total view of the egg surface, PhC. C. Total view of the egg surface, DIC. D. Details of the egg surface, PhC. E–H. Egg processes, PhC. I. Optical section of the egg process, DIC. Black arrowheads indicate bifurcated tips, white arrowheads indicate terminal and subterminal filaments, black arrow indicates a pore. Scale bars: A–C = 20 µm; D–I = 10 µm.
Fig. 4 in Algal genomics perspective: the pangenome concept beyond traditional molecular phylogeny and taxonomy
Fig. 4. The pangenome concept based on a comparison of gene inventory. Colored squares indicate commonly shared or newly acquired genes between species or populations.
Fig. 1 in Algal genomics perspective: the pangenome concept beyond traditional molecular phylogeny and taxonomy
Fig. 1. Phase-contrast microscopy images of diverse algal taxa. A. Rhodella maculata CCMP736 (Rhodophyta). B. Dixoniella grisea CCMP1916 (Rhodophyta). C. Emiliania huxleyi (Haptophyta). D. Diacronema lutheri LIMS-PS-0073 (Haptophyta). E. Proteomonas sulcata (Cryptophyta). F. Rhinomonas nottbecki (Cryptophyta). G. Coolia monotis (Alveolata). H. Sungminbooa australiensis (Pelagophyceae; Stramenopiles). I. Halamphora pseudohyalina (Bacillariophyceae; Stramenopiles). J. Navicula avium (Bacillariophyceae; Stramenopiles). K. Thalassiosira gravida (= T. rotula; Bacillariophyceae; Stramenopiles). L. Ditylum sol (Bacillariophyceae; Stramenopiles). Multifocus light microscopy images were merged, and white balances were properly adjusted by Adobe Photoshop and Illustrator (scale bars: A-F, and H-J = 15 μm; G, and K = 40 μm; L = 100 μm).
Fig. 3 in Algal genomics perspective: the pangenome concept beyond traditional molecular phylogeny and taxonomy
Fig. 3. Major photosynthetic algal lineages in the eukaryote Tree of Life (eToL). The eToL is reconstructed based on previous studies (Burki et al., 2019; Keeling and Burki, 2019; Strassert et al., 2019; Bhattacharya and Price, 2020; Sibbald and Archibald, 2020).
Fig. 2. The red algal phylogenomic approaches. A. Concatenated multigene phylogeny using 170 in Algal genomics perspective: the pangenome concept beyond traditional molecular phylogeny and taxonomy
Fig. 2. The red algal phylogenomic approaches. A. Concatenated multigene phylogeny using 170 plastid genes (Muñoz-Gómez et al., 2017). B. Concatenated multigene phylogeny using 4,777 nuclear genes (Lee et al., 2019). C. Intertwining phylogenetic network tree of red algal plastid and nuclear multigene phylogenies.
Fig. 1 in Taxonomic review of the umbelliferous taxa Heracleum moellendorffii complex in Korea based on molecular phylogenies of nuclear ribosomal ITS sequences
Fig. 1. Cladograms inferred from the analysis of 29 nuclear ribosomal DNA ITS1 and ITS2 sequences from the genus Heracleum and an outgroup. (A) The strict consensus of two minimal length 138-step trees derived from equally weighted maximum parsimony analysis of combined nuclear rDNA ITS and 5.8S sequences (CI's with and without uninformative characters=0.91 and 0.89, respectively; RI=0.95). Numbers above nodes indicate the number of times a monophyletic group occurred in 100 bootstrap replicates; decay values are presented below. (B) The Maximum likelihood tree using a transition/tranversion rate ratio of 1.5. Branch lengths are proportional to the number of expected nucleotide substitutions per site. Boxes A, B, and C indicate clades H. maximum-moellendorffii, H. subbipinnatum, and H. sphondylium, respectively.
FIGURE 16. Louteridium parayi. A in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 16. Louteridium parayi. A. Habit (Breedlove 67024). B. Bracteoles and flower (Breedlove & Thorne 30789). C. Calyx (Breedlove 28970). D. Corolla bud opened to show stamens (Breedlove 67024). E. Stigma (Breedlove 67024). F. Dehisced capsule (Breedlove 28970). G. Seed (Breedlove 28970). Drawn by Ellen del Valle.
FIGURE 9 in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 9. Map of Costa Rica (with provinces) and Panama (with provinces and comarcas) with distribution of Louteridium costaricense. Dots may pertain to multiple collections.
FIGURE 5 in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 5. Pollen of Louteridium (except for L. koelzii, which was unavailable). A. L. brevicalyx (Daniel & Steinmann 11913). B. L. chartaceum (Daniel & Butterwick 5905). C. L. costaricense (van der Werff 7019). D. L. dendropilosum (Daniel et al. 11784). E. L. donnell-smithii (Daniel & Véliz 11337). F. L. mexicanum (Breedlove & Thorne 30786). G. L. parayi (Daniel & Wendt 5805). H. L. parayi (Breedlove & Daniel 70889) with intine protruding from apertures (revealing their number). I. L. purpusii (Breedlove & Smith 31613). J. L. purpusii (Breedlove & Smith 31613), with intine protruding from apertures (revealing their number). K. L. rzedowskianum (Kruse 1380). L. L. tamaulipense (Hutchinson s.n.). All scales = 10 μm.
FIGURE 3 in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 3. Trichomes (SEM) of Louteridium spp. A, B. L. dendropilosum (Daniel et al. 11784), with dendritic trichomes bearing scattered micropapillae. C, D. L. donnell-smithii (Breedlove & Daniel 71197), with unbranched trichomes bearing micropapillae mostly arranged in lines.
FIGURE 14. Louteridium koelzii. A in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 14. Louteridium koelzii. A. Apex of shoot with flush of new leaves (McVaugh & Koelz 1797). B. Branch with inflorescence in flower (McVaugh & Koelz 1507). C. Leaf (McVaugh & Koelz 1797). D. Corolla bud opened (McVaugh & Koelz 1797). E. Dehisced corolla with epipetalous stamens (McVaugh 26180). F. Distal portion of style and stigma (McVaugh 26180). G. Partially dehisced capsule with calyx and pedicel (McVaugh 26180). H. Seed (McVaugh 26180). Drawn by Karin Douthit, copyright reserved to University of Michigan Herbarium, used with permission.
FIGURE 7 in Louteridium (Acanthaceae: Acanthoideae: Ruellieae: Trichantherinae): Taxonomy, Phylogeny, Reproductive Biology, and Conservation
FIGURE 7. Seeds of Louteridium. A. L. donnell-smithii (Breedlove & Bourell 68070). B. L. brevicalyx (Daniel & Steinmann 11913). C. L. brevicalyx in water (Daniel & Steinmann 11913). D. L. dendropilosum (Daniel et al. 11784). E. L. chartaceum (Daniel & Butterwick 5905). F. L. chartaceum (Daniel & Butterwick 5905) in water. G. L. mexicanum (Wendt et al. 3614). H. L. parayi (Breedlove 28970). I. L. purpusii (Breedlove & Smith 31613). J. L. chartaceum (Daniel & Butterwick 5905), detail of dry seed. K. L. chartaceum (Daniel & Butterwick 5905), detail of seed in water. All scales = 1 mm.
Fig. 7 in Polyclad phylogeny persists to be problematic
Fig. 7 Same tree as shown in Fig. 6, but with newly defined and named groups indicated. Acotylea and Cotylea sensu Faubel 1983 and 1984 are written in blue and red fonts, respectively. Species recovered as Acotylea
Fig. 2 in Polyclad phylogeny persists to be problematic
Fig. 2 Result of using versions 1 and 2 of sequences provided by Bahia et al. (2017). Bayesian inference tree reconstructions based on the 28Sshort1 (a) and 28Sshort3 (b) datasets, using MUSCLE alignments without Gblocks curation. The same taxa are used in (a) and (b), but with version 1 of sequences provided by Bahia et al. (2017) in (a) and version
Fig. 5 in Polyclad phylogeny persists to be problematic
Fig. 5 Extended majority-rule consensus tree based on all 12 trees of the 18S28Slong dataset shown in Suppl. Figs. S1–12. Numbers indicate percentage of support. Acotylea and Cotylea sensu Faubel 1983 and 1984 are written in blue and red fonts, respectively. Species recovered as Acotylea
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.