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FIGURE 1 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 1 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from D2 and D3 expansion domains of 28S rRNA sequence alignment under an SYM model with invariable sites and a gamma-shaped distribution (SYM + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site. ** = Branches collapsed, indicating clustered Longidorus species. For a more specific detail of collapsed clades, see supplementary fig. S1.
FIGURE 2 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 2 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from ITS1 rRNA sequence alignment under a 3-parameter model with invariable sites and a gamma-shaped distribution (TPM3 µf + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site. Downloaded from Brill.com08/29/2023 05:44:51PM via free access
Figure 2 in Multivariate analysis of the effects of site factors on the distributions of raphignathoid mites (Acari: Raphignathoidea)
Figure 2. Total abundance values of the species according to habitat types (a), seasons (b) and elevation belts (c).
Figure 1 in Multivariate analysis of the effects of site factors on the distributions of raphignathoid mites (Acari: Raphignathoidea)
Figure 1. The frequency (1) and abundance (2) values of the species (a), genus (b), and families (c).
Data from: Geographic distribution of terpenoid chemotypes in Tanacetum vulgare mediates tansy aphid occurrence but not abundance
<p>Intraspecific variation of specialized metabolites in plants, such as terpenoids, are used to determine chemotypes. Tansy (<em>Tanacetum vulgare</em> L.) exhibits diverse terpenoid profiles that affect insect communities. However, it is not fully known whether patterns of their chemical composition and associated insects vary beyond the community scale. Here, we investigated the geographic distribution of mono- and sesquiterpenoid chemotypes in tansy leaves and their relationships with specific insect communities across Germany. We sampled tansy leaves from ten plants with and five plants without aphids in each of 26 sites along a north-south and west-east transect in Germany. Hexane-extracted metabolites from leaf tissues were analyzed by gas chromatography-mass spectrometry (GC-MS). Plant morphological traits, aphid occurrence and abundance, and occurrence of ants were recorded locally. The effect of plant chemotype, plant morphological parameters, and abiotic site parameters such as soil types, temperature and precipitation on insect occurrences were analyzed. Plants clustered into four monoterpenoid and four sesquiterpenoid chemotype classes. Monoterpene classes differed in their latitudinal distribution, whereas sesquiterpenes were more evenly distributed across the transect. Aphid and ant occurrence was influenced by monoterpenoids. Plants of monoterpenoid class 1 were colonized by aphids and ants significantly more often than expected by chance, whereas in other classes there were no significant differences. Aphid abundance was affected by soil type, and average annual temperature positively correlated with the occurrence of ants. We found significant geographic patterns in the distribution of tansy chemodiversity and show that monoterpenoids affect aphid and ant occurrence, while the soil type can influence aphid abundance. We show that geographic variation in plant chemistry influences insect community assembly on tansy plants.</p>
Fig. 12. Distribution records for E in Taxonomic revision of the oil-collecting bee subgenus Epicharis (Epicharitides) Moure, 1945 (Hymenoptera: Apidae), with the description of two new species
Fig. 12. Distribution records for E. lia sp. nov., E. mesoamericana sp. nov. and E. rufescens Moure & Seabra, 1959.
Fig. 10. Distribution records for Epicharis cockerelli Friese, 1900, E. duckei Friese, 1901 and E. iheringi Friese, 1899. Symbols with a in Taxonomic revision of the oil-collecting bee subgenus Epicharis (Epicharitides) Moure, 1945 (Hymenoptera: Apidae), with the description of two new species
Fig. 10. Distribution records for Epicharis cockerelli Friese, 1900, E. duckei Friese, 1901 and E. iheringi Friese, 1899. Symbols with a cross represent records from literature.
Fig. 1 in Constant fluctuating asymmetry but not directional asymmetry along the geographic distribution of Drosophila antonietae (Diptera, Drosophilidae)
Fig. 1. Locations of the sampled populations of Drosophila antonietae. Serrana (21◦ 14Ɩ S, 47◦ 34Ɩ W), Itirapina (22◦16Ɩ S, 47◦48Ɩ W), Guarapuava (25◦17Ɩ S, 51◦53Ɩ W), Cantagalo (25◦25Ɩ S, 52◦04Ɩ W), Santiago (29◦ 23Ɩ S, 54◦44Ɩ W).
Data from: Distribution, ecology, and natural history of the recently rediscovered and critically endangered Santa Marta Sabrewing
<div><strong>Description for "RawData&media_Cphainopeplus" dataset.</strong></div> <div> </div> <div>Data from: Distribution, ecology, and natural history of the recently rediscovered and critically endangered Santa Marta Sabrewing</div> <div>MS bioRxiv ID: </div> <div>Article DOI:</div> <div> </div> <div>Please address questions to:</div> <div> </div> <div>Esteban Botero D., Dr.Sc.</div> <div>Director of Conservation Science</div> <div>SELVA: Research for Conservation in the Neotropics</div> <div>http://www.selva.org.co</div> <div>https://www.selva.org.co/integrantes/esteban-botero-delgadillo/</div> <div>e-mail: eboterod@gmail.com; esteban.botero@selva.org.co</div> <div> </div> <div>=====================================================================================</div> <div>=====================================================================================</div> <div> </div> <div> </div> <div><strong>General information:</strong></div> <div> </div> <div>The whole dataset contains information on Santa Marta Sabrewing, a critically endangered (CR) hummingbird species endemic to the Sierra Nevada de Santa Marta, northern Colombia. Part of the data are of public access and consist of historical geographic records, while another part contains data collected from a focal study population of Santa Marta Sabrewing inhabiting along the La Macana stream, in the Guatapurí River Basin, Cesar Department. No exact coordinates from the focal population were included in this dataset or related documents/materials to protect these locations.</div> <div> </div> <div>The data set is comprised by an Excel file (four spreadsheets) and two short video files that are explained below.</div> <div> </div> <div>*************************************************************************************</div> <div> </div> <div><strong>Excel file "RawData_Cphainopeplus.xlsx" (created 12-02-2024)</strong></div> <div> </div> <div> </div> <div>********** Spreadsheet "1. ConfirmedLoc" **********</div> <div>This spreadsheet contains metadata for the only five records of Santa Marta Sabrewing with confirmatory evidence.</div> <div> </div> <div>The matrix contains the following variables:</div> <div> </div> <div>VARIABLE DESCRIPTION</div> <div> </div> <div>Locality: Name of the locality as described in museums or public databases.</div> <div>Department: Name of department where the locality is found.</div> <div>Latitude: Latitude in decimal degrees.</div> <div>Longitude: Longitude in decimal degrees.</div> <div>Record status: Confirmed (with confirmatory evidence) or unconfirmed (without or needing further examination).</div> <div>Evidence: Evidence available to confirm the record.</div> <div>Source: Source of the record.</div> <div>Observations: Additional information for each row.</div> <div> </div> <div> </div> <div>********** Spreadsheet "2. PointCountDat" **********</div> <div>This spreadsheet contains information from bird counts aimed at detecting Santa Marta Sabrewing.</div> <div> </div> <div>The matrix contains the following variables:</div> <div> </div> <div>VARIABLE DESCRIPTION</div> <div> </div> <div>ID: Point-count station ID.</div> <div>Elevation: Elevation in m.</div> <div>Native: Proportion (0–1) of native vegetation 100 m around the point coordinates.</div> <div>Transformed: Proportion (0–1) of transformed vegetation 100 m around the point coordinates.</div> <div>R1: First point-count replicate, with 0 = absence and 1 = presence.</div> <div>R2: Second point-count replicate, with 0 = absence and 1 = presence.</div> <div>R3: Third point-count replicate, with 0 = absence and 1 = presence.</div> <div>R4: Fourth point-count replicate, with 0 = absence and 1 = presence.</div> <div> </div> <div> </div> <div>********** Spreadsheet "3. Behav" **********</div> <div>This spreadsheet contains information from ad libitum observations to characterize habitat associations and general behaviour of Santa Marta Sabrewing.</div> <div> </div> <div>The matrix contains the following variables:</div> <div> </div> <div>VARIABLE DESCRIPTION</div> <div> </div> <div>Date: Date (day/month/year).</div> <div>Hour: Hour in 24h format.</div> <div>Elevation: Elevation in m.</div> <div>No. Indiv.: No. of individuals of Santa Marta Sabrewing recorded.</div> <div>Behaviour: Simple categories describing sabrewing behaviour.</div> <div>Habitat: Simple categories describing habitat type where sabrewing was recorded.</div> <div> </div> <div> </div> <div>********** Spreadsheet "4. HabitatNeu" **********</div> <div>This spreadsheet contains estimated quantities for estimating Neu´s habitat proportions for Santa Marta Sabrewing. </div> <div> </div> <div>The matrix contains the following variables:</div> <div> </div> <div>VARIABLE DESCRIPTION</div> <div> </div> <div>Habitat: Simple categories describing habitat type where sabrewing was recorded.</div> <div>Obs. Count: No. of Santa Marta Sabrewing records in each habitat type.</div> <div>Hab. Prop.: Proportional area (0–1) of each habitat type in study area.</div> <div>Expected Use: Expected No. of records based on each habitat's proportional area.</div> <div>Sel. Ratio: Ratio between observed count and expected use.</div> <div>Standard. Ratio: Standardized selection ratio (0–1).</div> <div> </div> <div>*************************************************************************************</div> <div> </div> <div><strong>Video file "Campylopterus_threat.mp4" (modified 09-02-2024)</strong></div> <div> </div> <div>A slow-motion (~0.1 x) video showing a perching male Santa Marta Sabrewing involved in a persecution flight with a conspecific male aggressor. <span>Footage was taken along the course of La Macana stream, near Chemesquemena village (Cesar Department, northern Colombia). </span>Video: Elquin Toro © (reproduced with permission).</div> <div> </div> <div>*************************************************************************************</div> <div> </div> <div><strong>Video file "Campylopterus_fight.mp4" (modified 09-02-2024)</strong></div> <div> </div> <div>A lek-attending male Santa Marta Sabrewing vocalizing in a perch and subsequently adopting a threatening body posture with wing and tail feathers extended towards a conspecific male intruder. <span>Footage was taken along the course of La Macana stream, near Chemesquemena village (Cesar Department, northern Colombia). </span>Video: Elquin Toro © (reproduced with permission).</div> <div> </div> <div> </div> <div>=====================================================================================</div> <div> </div> <div> </div> <div><strong>Methodological information (for more details, please see the related manuscript):</strong></div> <div> </div> <div>We conducted a thorough revision of scientific literature, international public databases, digital collections, and museum international/national bird collections in search of geographical records of Santa Marta Sabrewing.</div> <div> </div> <div>Aside from the locality where the focal population was found (along the La Macana stream, near the Chemesquemena village, Cesar department), we also conducted three 4–7-day field expeditions to three other localities where Santa Marta Sabrewing could stably occur: San Lorenzo ridge (Magdalena Department); the upper Rioancho River basin, in Dibulla (La Guajira Department); Aracataca (Magdalena Department).</div> <div> </div> <div>We projected Santa Marta Sabrewing's extent of occurrence (EOO) and area of occupancy (AOO). Our EOO and AOO projections were compared with the threshold values given under the IUCN’s criteria B1 and B2 (IUCN 2022). To this end, we delimited suitable habitat in ArcGIS Desktop 10 (ESRI 2011) using a vegetation layer from the CORINE Land Cover Methodology from Colombia, 2018, at 1:100,000 scale (IDEAM 2021), and a layer of biomes compiled in the public-access portal of the Land-use Planning Geographic Information System (SIG-OT) of the “Agustín Codazzi” Geographic Institute of Colombia (https://geoportal.igac.gov.co).</div> <div> </div> <div>We conducted bird counts from September to December 2022 to estimate local abundance along the course of La Macana stream, near Chemesquemena village. Bird surveys were carried out using 20 georeferenced point-count stations (30 m radius), in which one observer searched for Santa Marta Sabrewing for 15 min. One count per station was conducted every month between 07:00 to 11:00s. Detection histories were analysed using the <em>occu</em> function in the <em>unmarked</em> package (Fiske and Chandler 2011) in R 4.0.2 (R Core Team 2020).</div> <div> </div> <div>In the same locality, we also conducted ad libitum observations from July 2022 to October 2023 to describe different aspects of the species’ natural history. We conducted 2–3-day monthly visits to monitor individuals and territories year-round. We described feeding habits and aspects of social or breeding behaviour, including territorial and lekking displays, vocal activity, and lek conformation.</div> <div> </div> <div>Lastly, we performed acoustic analysis focused on a description of Santa Marta Sabrewing territorial calls based on three males. We selected and analyzed a single high-quality recording per male of 20 seconds each. We used a Zoom H6 recorder coupled with a Rode NTG4 phantom-powered shotgun microphone. We visualized and analyzed the recordings using the Seewave package (Sueur et al. 2008) in R.</div> <div> </div> <div> </div> <div><strong>References:</strong></div> <div> </div> <div>ESRI (2011). ArcGIS Desktop: Release 10. Redlands, CA, USA: Environmental Systems Research Institute.</div> <div> </div> <div>Fiske, I., and Chandler, R. (2011). “unmarked”: an R package for Fitting Hierarchical Models of Wildlife Occurrence and Abundance. J. Stat. Soft. 43: 1–23.</div> <div> </div> <div>IDEAM (2021). Leyenda nacional de coberturas de la tierra. Metodología CORINE Land Cover adaptada para Colombia escala 1:100.000 (período 2018). Bogotá, Colombia: Instituto de Hidrología, Meteorología y Estudios Ambientales (IDEAM).</div> <div> </div> <div>IUCN Standards and Petitions Committee (2022). Guidelines for using the IUCN Red List Categories and Criteria. Version 15. Prepared by the Standards and Petitions Committee. https://www.iucnredlist.org/documents/RedListGuidelines.pdf</div> <div> </div> <div>R Core Team. (2020). R: a language and environment for statistical computing, version 4.0.2. R Foundation for Statistical Computing, Vienna, Austria, http://www.R.project.org</div> <div> </div> <div>Sueur, J., Aubin, T., and Simonis, C. (2008). Seewave: a free modular tool for sound analysis and synthesis. Bioacoustics 18: 213–226.</div> <div> </div> <div>=====================================================================================</div> <div>=====================================================================================</div> <p> </p>
FIG. 2 in Paleotropical distribution of the genus Neotropicomus A.C.Magnago, Alves-Silva & T.W.Henkel: a new species from India
FIG. 2. — Phylogram inferred from combined ITS and 28S dataset using IQTree program. BS ≥ 60% is indicated above or below the branches. Novel taxon is given in bold.
FIG. 1 in Paleotropical distribution of the genus Neotropicomus A.C.Magnago, Alves-Silva & T.W.Henkel: a new species from India
FIG. 1. — Neotropicomus indicus sp. nov. (from holotype): A-C, basidiomata; D, basidiospores; E, basidia; F, G, pleurocystidia; H, cheilocystidia; I, pileipellis; J, stipitipellis; K, terminal cells of pileipellis; L, caulocystidium. Scale bars: A-C, 20 mm; D-H, K, L, 10 μm; I, J, 20 μm.
Fig. 21 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 21. Stenaelurillus tamravarni Marathe & Maddison, 2022, male habitus, live photographs from Chandrappa circle, Bangalore, Karnataka. Photographs by Amith Kiran Menezes.
Fig. 20 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 20. Stenaelurillus neyyar Sudhin, Sen & Caleb, 2023, habitus, live photographs from Nagercoil, Tamil Nadu. A–C. Specimen, ♂ (NRC-AA-6968). D–F. Specimen, ♂ (NRC-AA-6969). G–I. Specimen, ♀ (NRC-AA-6970). Photographs by Rishikesh Tripathi.
Fig. 18 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 18. Stenaelurillus gabrieli Prajapati, Murthappa, Sankaran & Sebastian, 2016, habitus, live photographs from Kudal, Sindhudurg, Maharashtra. A–D. Specimen, ♀ (NRC-AA-6965). E–G. Specimen, ♂ (NRC-AA-6964). Photographs by Rishikesh Tripathi.
Fig. 19. Stenaelurillus lesserti Reimoser, 1934 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 19. Stenaelurillus lesserti Reimoser, 1934., habitus, live photographs from Bengaluru (A–B, G) and Puducherry (C–F). A–B, D, F. Specimen, ♂ (NRC-AA-6966). C, E. Specimen, ♀ (NRC-AA-6967). G. Mating. Photographs by Amith Kiran Menezes (A–B, G) and Rishikesh Tripathi (C–F).
Fig. 17 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 17. Stenaelurillus arambagensis (B. Biswas & K. Biswas, 1992), habitus, live photographs from Kanukurthy, Telangana. A–B, D. Specimen, ♂ (NRC-AA-6960). C, E–F. Specimen, ♀ (NRC-AA-6962). Photographs by Rishikesh Tripathi.
Fig. 15 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 15. Distant habitat views of the collection site of species of Stenaelurillus Simon, 1886. A. Stenaelurillus feral Tripathi, Kuni & Kadam sp. nov. B. Stenaelurillus naldurg Kuni, Kadam & Tripathi sp. nov. C. Stenaelurillus judithbleisterae Kadam, Tripathi & Kuni sp. nov. D. Stenaelurillus solapur Kuni, Tripathi & Kadam sp. nov. Photographs by Gautam Kadam (C), Nikhil Kuni (B, D) and Vasavi Prakash (A).
Fig. 14 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 14. Stenaelurillus solapur Kuni, Tripathi & Kadam sp. nov., genitalia. A–B. Holotype, ♂ (NRC-AA-6957). A. Male palp, ventral view; the arrow indicates the extension of embolus. B. Male palp, retrolateral view. C–E. Paratype, ♀ (NRC-AA-6959). C. Epigyne, ventral view. D. Vulva, dorsal view. E. Vulva, dorsal view of insemination ducts on left side. Scale bars: A–B = 0.2 mm; C–D = 0.1 mm.
Fig. 13 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 13. Stenaelurillus solapur Kuni, Tripathi & Kadam sp. nov., genitalia. A–F. Holotype, ♂ (NRC-AA-6957). A. Male palp, ventral view. B. Male palp, retrolateral view. C. Embolic division, ventral view. D. Embolic division, retrolateral view. E. Embolic division, prolateral view. F. Embolic division, apical view. G–H. Paratype, ♀ (NRC-AA-6959). G. Epigyne, ventral view. H. Vulva, dorsal view. Scale bars: A–H = 0.2 mm.
Fig. 11 in Four new species and five new distribution records of the jumping spider genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillines) from India
Fig. 11. Stenaelurillus solapur Kuni, Tripathi & Kadam sp. nov., habitus, live photographs. A–D. Holotype, ♂ (NRC-AA-6957). Photographs by Rishikesh Tripathi.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.