Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
14,185
datasets available to search
ShareScore release 0.9.0
Dataset results
14,185 results for “phylogenies”
Fig. 6 in Polyclad phylogeny persists to be problematic
Fig. 6 Extended majority-rule consensus tree based on all 12 trees of the 28Sshort6 dataset shown in Suppl. Figs. S13–24. Numbers indicate percentage of support. Acotylea and Cotylea sensu Faubel 1983 and 1984 are written in blue and red fonts, respectively. Species recovered as Acotylea
Taxon sampling and inferred community phylogenies: R replication code and data.
<p>1 ) Code for simulating community phylogenies:</p> <p>community_simulations_creation.R</p> <p>[taxon].gene</p> <p>[taxon].phy</p> <p>[taxon].RAxML_bestTree.tre</p> <p>[taxon].Simulate.A.Community.pl</p> <p>[taxon].Simulate.B.Community.pl</p> <p>[taxon].Simulate.C.Community.pl</p> <p>[taxon].Simulate.D.Community.pl</p> <p> </p> <p>2) R code for creating and comparing phylogenetic diversity metrics:</p> <p>simulated_metric_calculation_and_comparison.R</p> <p>empirical_metric_calculation_and_comparison.R</p> <p> </p> <p>3) R code and data for statistical analyses:</p> <p>simulated_data_analysis.R</p> <p>empirical_data_analysis.R</p> <p>simulated_interval_individual_lme_data.csv</p> <p>simulated_summary_interval_individual_lme_data.csv</p> <p>empirical_interval_individual_lme_data.csv</p> <p>empirical_summary_interval_lme_data.csv</p> <p> </p>
Towards identifying the optimal datasize for lexically-based Bayesian inference of linguistic phylogenies
<p>This repository contains the nexus files and MrBayes command files needed for running the experiments to determine the optimal word list size required for inferring the best phylogenies.</p> <p>The paper is forthcoming at <strong>The 27th International Conference on Computational Linguistics (COLING 2018), Santa Fe, New-Mexico, USA</strong>.</p>
Phylogeny of Cimicidae
<p>Alignment file</p> <p>Chronogramme under different phylogenetic assumptions</p> <p>GBlock alignment tests, Bayesian analysis of individual gene trees, consenus tree, Maximum Likelihood tree</p>
Fig. 5 in A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny
Fig. 5 (opposite page). Tethyida COI and 28S maximum-likelihood (RaxML) trees. ML bootstrap supports (1000 bootstrap replicates)> 70 are indicated. After the species name, locality of the specimen is given (when known), followed by the GenBank accession number(s). For 28S, we also indicated the 28S region that was sequenced as well as the first author + date of the publication where the sequence first appeared. Type species of genera are in red boxes while Tethya irisae sp. nov. appears in red.
Fig. 3 in A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny
Fig. 3. Tethya irisae sp. nov. spicules. A–B. Straight style/strongyloxeas. C. Subtylostyle. D. Long-rayed oxyspheraster. E. Short-rayed oxyspheraster with small acanthooxyspheraster. F. Acanthooxyspheraster.
Fig. 1 in A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny
Fig. 1. Sites where Tethya irisae sp. nov. was collected in the Great Australian Bight, including sites that were sampled where the sponge was not found. All specimens of Tethya irisae sp. nov. were collected along the 1000 m contour. Light shaded polygons show the Australian Commonwealth Marine Reserves. The darker polygon strip is the GAB Marine Park Benthic Protection Zone. The 200 m contour is the edge of the continental shelf. Abbreviations: GABDMP = Great Australian Bight Deepwater Marine Program (MNF 2015); GABRP = Great Australian Bight Research Project (Williams et al. 2018). Cruise SS2010_T02 (Currie & Sorokin 2011).
Fig. 4 in A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny
Fig. 4. Comparative sizes and external morphology of species of Tethya Lamarck, 1815. A. Tethya irisae sp. nov., holotype (SAMA S3387). B. Tethya bullae Bergquist & Kelly-Borges, 1991, part of the holotype (AM Z5074). C. Tethya fissurata Lendenfeld, 1888, syntype (AM G.9069) Note: the original photo of T. bullae (Bergquist & Kelly-Borges 1991) shows rooting processes.
Fig. 2. A in A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny
Fig. 2. A. Freshly collected specimens (lot SAMA S2096) of Tethya irisae sp. nov. B. Paratype (QM G305000) showing single apical oscule (arrow), and tessellated plate-like polygonal tubercules. C–D. Holotype (SAMA S3387), entire specimen and SEM showing surface tubercules with emerging megascleres. E. Section of UPSZTY 178608, showing the well-developed cortex and cortical canals around the tubercules.
Fig. 3 in Mysterious chokeberries: new data on the diversity and phylogeny of Aronia Medik. (Rosaceae)
Fig. 3. Cluster analysis (binary distance, Ward clustering method) of the occurrence of eight basic rbcL and ITS2 haplotypes.
Fig. 7 in Mysterious chokeberries: new data on the diversity and phylogeny of Aronia Medik. (Rosaceae)
Fig. 7. Transformation grids of leaf shape from four Aronia species, with deformations required to reach the overall average shape.
Fig. 6 in Mysterious chokeberries: new data on the diversity and phylogeny of Aronia Medik. (Rosaceae)
Fig. 6. Ordination from multidimensional scaling of the Gower distance matrix from the combined dataset of haplotypes occurrence and morphology.
Fig. 2 in Mysterious chokeberries: new data on the diversity and phylogeny of Aronia Medik. (Rosaceae)
Fig. 2. Abundance of haplotypes per species. Each rectangle is a species. The first letter of haplotype name represent the marker: i for ITS2, r for rbcL and t for trnL-F. Dots correspond with haplotype counts.
Fig. 18 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 18. Mexico masamii (Satô, 1994), male (A–F) and female (G–J) genitalia (EUMJ). A, G. Sternite VII. B. Sternite VIII. C. Sternite IX. D. Aedeagus, ventral view. E. Aedeagus in dorsal view. F. Aedeagus in right lateral view. H. Urosternite. I. Ovipositor.
Fig. 15 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 15. Mexico palauensis sp. nov., male (A–G) and female (H–J) genitalia (paratypes, EUMJ). A, H. Sternite VII. B. Sternite VIII. C. Sternite IX. D. Aedeagus, ventral view. E. Aedeagus in dorsal view. F. Aedeagus in right lateral view. G. Aedeagus, left lateral view. I. Urosternite. J. Ovipositor.
Fig. 14 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 14. Mexico papuanus sp. nov., male (A–F) and female (G–I) genitalia (holotype and paratype, BPBM). A, G. Sternite VII. B. Sternite VIII. C. Sternite IX. D. Aedeagus in dorsal view. E. Aedeagus, ventral view. F. Aedeagus, left lateral view. H. Urosternite. I. Ovipositor.
Fig. 17 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 17. Mexico taiwanus (Satô, 1994), male (A–F) and female (G–J) genitalia (EUMJ). A, G. Sternite VII. B. Sternite VIII. C. Sternite IX. D. Aedeagus, ventral view. E. Aedeagus in dorsal view. F. Aedeagus in right lateral view. H. Urosternite. I. Ovipositor. J. Spermatheca.
Fig. 11 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 11. Species of Mexico Spilman, 1972. A. M. borneensis sp. nov., holotype (BPBM). B. M. papuanus sp. nov., holotype (BPBM). C. M. ogasawaraensis sp. nov., holotype (EUMJ). D. M. baliensis sp. nov., holotype (EUMJ). E. M. palauensis sp. nov., holotype (EUMJ). F. M. masamii (Satô, 1994) (EUMJ). G. M. taiwanus (Satô, 1994), paratype (EUMJ). Scale bars: 1.0 mm.
Fig. 13 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 13. Mexico baliensis sp. nov., male (A–G) and female (H–K) genitalia (paratypes, EUMJ). A, H. Sternite VII. B. Sternite VIII. C. Sternite IX. D. Aedeagus in dorsal view. E. Aedeagus, ventral view. F. Aedeagus in right lateral view. G. Aedeagus, left lateral view. I. Urosternite. J. Ovipositor. K. Spermatheca.
Fig. 10 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 10. Pseudeucinetus papuanus sp. nov., male genitalia, holotype, BPBM. A. Sternite VII. B. Sternite IX. C. Aedeagus, ventral view. D. Aedeagus, right lateral view.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.