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975
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ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis
GEO Series GSE240107. Medicago truncatula. 27 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning
GEO Series GSE243140. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Hand1 gene replacement with Hand2 reveals overlap in function with unique occurrence of omphalocele and heart defects [Spatial Transcriptomics]
GEO Series GSE298742. Mus musculus. 15 samples. Type: Other.
Spatial Transcriptomics of Colorectal Carcinoma Sample with Different Level of Differentiation
GEO Series GSE284061. Homo sapiens. 1 samples. Type: Other.
Spatial profiling of temporal artery biopsies from patients with giant cell arteritis using NanoString GeoMx Whole Transcriptome Atlas
GEO Series GSE299070. Homo sapiens. 108 samples. Type: Other.
Staphylococcus aureus delays wound repair by harnessing the agr quorum sensing system to target keratinocyte lipid metabolism [Spatial Transcriptomics]
GEO Series GSE273931. Mus musculus. 1 samples. Type: Other.
Spatial transcriptomic based, endocapillary hypercellularity in IgA nephropathy
GEO Series GSE311745. Homo sapiens. 34 samples. Type: Other.
High-Resolution Spatial Transcriptomics Reveals Stroma Damage in Human Ovarian Tissue Response to Cryopreservation
GEO Series GSE267323. Homo sapiens. 6 samples. Type: Other.
Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma
GEO Series GSE313858. Homo sapiens. 4 samples. Type: Other.
Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics]
GEO Series GSE283145. Homo sapiens. 3 samples. Type: Other.
Single-cell and spatial transcriptomics profile of porcine jejunum and ileum containing Peyer's patches
GEO Series GSE232605. Sus scrofa. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomics revealing host-microbe interactions
GEO Series GSE210738. mouse gut metagenome; Mus musculus. 10 samples. Type: Other.
Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails
GEO Series GSE313338. Ambystoma mexicanum. 25 samples. Type: Other.
Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated
GEO Series GSE286227. Homo sapiens. 2 samples. Type: Other.
A Single-Cell Woodchuck Liver Atlas Identifies Healthy and Disease-related Cellular Programs Conserved in Human [spatial transcriptomics]
GEO Series GSE264107. Marmota monax. 4 samples. Type: Other.
Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta
GEO Series GSE303764. Cavia porcellus. 12 samples. Type: Other.
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium]
GEO Series GSE264692. Homo sapiens. 12 samples. Type: Other.
SPP1+ Macrophages Contribute to Hair Growth in Contact Hypersensitivity [spatial transcriptomics]
GEO Series GSE306162. Mus musculus. 1 samples. Type: Other.
Dataset related to article"Integrating single-cell and spatial transcriptomics to elucidate the crosstalk between cancer-associated fibroblasts and cancer cells in hepatocellular carcinoma with spleen-deficiency syndrome"
<p>Most patients with hepatocellular carcinoma (HCC) in China have been diagnosed with spleen deficiency syndrome (SDS), which accelerates the progression of HCC by disrupting the tumor microenvironment (TME) homeostasis. However, the underlying mechanism remains to be explored. By integrating single-cell and spatial transcriptomics, we found that the crosstalk between CAFs and cancer cells is crucial for the tumor-promoting effect of SDS. CAFs recruited by HCC via PDGFA may lead to ECM remodeling through activation of the TGF-β pathway, thereby forming a physical barrier to block immune cell infiltration under SDS. </p>
Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease
GEO Series GSE152506. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.