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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases
GEO Series GSE268779. Mus musculus. 7 samples. Type: Other.
Global Transcriptome Profiles in the Nodes of Rice During Spatial and Temporal Development
GEO Series GSE11896. Oryza sativa. 134 samples. Type: Expression profiling by array.
Single-cell transcriptome combined with spatial transcriptome to investigate the molecular mechanism associated with autophagy of clear renal cell carcinoma
GEO Series GSE304466. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-cell and spatial transcriptomic analysis of homeostatic adult human skin
GEO Series GSE173651. Homo sapiens. 6 samples. Type: Other.
Characterization of cuprizone mouse model at single-cell and spatial transcriptomics level[snRNA-seq]
GEO Series GSE255369. Mus musculus. 45 samples. Type: Expression profiling by high throughput sequencing.
Multimodal integration of epigenetics, spatial transcriptomics and immune microenvironment in sacral chordoma
GEO Series GSE308436. Homo sapiens. 29 samples. Type: Methylation profiling by genome tiling array.
Spatial transcriptome analysis reveals the lymph node atlas of breast cancer metastases
GEO Series GSE189042. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary remodeling of the ventral retina enables aerial vision in the four-eyed fish Anableps anableps [Spatial Transcriptomics]
GEO Series GSE306418. Anableps anableps. 4 samples. Type: Other.
A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE)
GEO Series GSE284005. synthetic construct; Homo sapiens. 17 samples. Type: Other.
Spatial transcriptome of muscle sample from the main electric organ of electric eel
GEO Series GSE229635. Electrophorus voltai. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions - Microglia cell culture
GEO Series GSE301696. Mus musculus; synthetic construct. 4 samples. Type: Other.
Dynamic responses to rejection in the transplanted human heart revealed through spatial transcriptomics
GEO Series GSE290577. Homo sapiens. 2 samples. Type: Other.
Spatial transcriptomics reveals distinct tumor microenvironment of murine breast cancer model undergoing treatment with a humanized monoclonal antibody targeting FABP4
GEO Series GSE264099. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Multicellular origins of ovarian inflammaging [Spatial Transcriptomics]
GEO Series GSE317297. Mus musculus. 2 samples. Type: Other.
spaTransfer: transfer learning for single-cell and spatial transcriptomics data using non-negative matrix factorization [DG]
GEO Series GSE317381. Homo sapiens. 4 samples. Type: Other.
Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris
GEO Series GSE301280. Homo sapiens. 24 samples. Type: Other.
Single-nucleus and spatial transcriptome identify brain landscape of gene regulatory networks associated with behavioral maturation in honeybees
GEO Series GSE295620. Apis mellifera. 59 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA sequencing and spatial transcriptomics reveal the osteoimmune microenvironment of biomaterial-mediated bone regeneration [scRNA-seq]
GEO Series GSE246475. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns
GEO Series GSE114723. Caenorhabditis elegans. 10 samples. Type: Expression profiling by high throughput sequencing.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Visium]
GEO Series GSE276934. Homo sapiens. 1 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.