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Figure 5 in Integrative taxonomy of the gymnophthalmid lizard Neusticurus rudis Boulenger, 1900 identifies a new species in the eastern Pantepui region, north-eastern South America
Figure 5. Variation of hemipenial bodies. (a) Neusticurus rudis sensu stricto from Maringma-tepui, Guyana (IRSNB18432). (b) N. rudis UCS 2 from Iwokrama, Guyana (IRSNB18446). (c) N. arekuna sp. nov. from Pacaraima, Brazil (MZUSP106223). (d) N. arekuna UCS 1 from Abakapá-tepui, Venezuela (IRSNB18150). Photos PMSN.
Figure 16 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 16. Spathidiid phylogeny based on the 18S rRNA gene (a) and concatenation of the 18S rRNA gene and ITS region sequences (b). Bootstrap values for maximum likelihood (ML) and posterior probabilities were mapped onto the Bayesian inference (BI) tree. A dash indicates bootstrap values below 50%. Newly obtained sequences are in bold. Scale bars indicate numbers of substitutions.
Figure 12 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 12. Spathidium securiforme from life. (a) Right side view of a representative individual; (b, c) optical sections showing tortuous macronuclear strand; (d) detail of anterior body portion showing type I (arrows) and type II (arrowheads) extrusomes attached to oral bulge; (e) optical section showing type I (arrows) and type II (arrowheads) extrusomes scattered throughout cytoplasm. MA, macronucleus. Scale bars: a = 100 µm; b, c = 10 µm; d, e = 5 µm.
Figure 10 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 10. Spathidium rectitoratum from life (a, h, i) and after protargol impregnation (b–g). (a) Right side view of a representative individual; (b, c) right and left side view of ciliary pattern and nuclear apparatus of a representative specimen; (d) detail of anterior body end showing three-rowed dorsal brush; (e–g) variability of body shape and size as well as of nuclear apparatus; (h) oral extrusomes, 8–13 µm long; (i) resting cyst, 50 µm in diameter. CK, circumoral kinety; DB, dorsal brush; MA, macronucleus; OB, oral bulge; SK, somatic kinety/somatic kineties. Scale bars: a–c, e–g = 100 µm; d = 10 µm.
Figure 8 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 8. Spathidium polynucleatum from life (a, c, g) and after protargol impregnation (b, d–f). (a) Right side view of a representative individual; (b) developing cytoplasmic extrusomes, 4–8 µm long; (c) oral extrusomes, 8–10 µm long; (d, e) right and left side view of ciliary pattern and nuclear apparatus of a representative specimen; (f) dorsal view of ciliary pattern in anterior body portion; (g) cortical granulation. CG, cortical granules; CK, circumoral kinety; DB, dorsal brush; MA, macronuclear nodules/macronucleus; MI, micronuclei/micronucleus; OB, oral bulge; SC, somatic cilia; SK, somatic kinety/somatic kineties. Scale bars: a, d, e = 100 µm; f = 30 µm.
Figure 7 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 7. Spathidium papilliferum after protargol impregnation, Ssanggyesa temple population. (a, b) Right side view of representative individuals; (c) nuclear apparatus in mid-body; (d, e) developing and mature cytoplasmic extrusomes; (f) dorsolateral view showing three-rowed dorsal brush and oral bulge papillae studded with extrusomes; (g, h) right and left side views of ciliary pattern in anterior body portion; (i) detail of anterior body portion showing oral bulge papillae with extrusomes. CV, contractile vacuole; CK, circumoral kinety; DB, dorsal brush; EX, extrusomes; MA, macronuclear nodules/macronucleus; MI, micronuclei/micronucleus; SK, somatic kinety/somatic kineties; triangles in (a, b, h, i) denote oral bulge papillae. Scale bars: a, b = 100 µm; c–i = 10 µm.
Figure 15 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 15. Apobryophyllum schmidingeri after protargol impregnation. (a–d, f) Left side views showing variability of body shape and size as well as of nuclear apparatus; (e, i, j) details of nuclear apparatus; (g, h) left and right side views of ciliary pattern in anterior body portion. CK, circumoral kinety; DB, dorsal brush; EX, extrusomes; MA, macronuclear nodules/macronucleus; MI, micronuclei/ micronucleus, SK, somatic kinety/somatic kineties. Scale bars: a–d = 100 µm; e = 5 µm; f–j = 10 µm.
Figure 1 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 1. Enchelys megaspinata sp. nov. from life (a–d, l) and after protargol impregnation (e–k). (a) Right side view of a representative individual; (b) resting cyst, 50 µm in diameter; (c) cortical granulation; (d) oral extrusomes, 9–12 µm long; (e) developing cytoplasmic extrusomes, 1–10 µm long; (f–h) variability of body shape and size as well as of nuclear apparatus; (i) nuclear apparatus in mid-body; (j, k) dorsal and ventral views of ciliary pattern in anterior body portion; (l) variability of body shape and size. CG, cortical granules; DB, dorsal brush; MA, macronuclear nodules/macronucleus; MI, micronuclei/micronucleus; OB, oral bulge; SK, somatic kinety/somatic kineties. Scale bars: a, f–h, l = 100 µm; b = 50 µm; j, k = 10 µm.
Figure 14 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 14. Apobryophyllum schmidingeri from life. (a–g) Left side views showing variability of body shape and size; (h) extrusomes attached to oral bulge; (i) detail of posterior body portion showing contractile vacuole (triangle) and extrusomes (arrow) attached to oral bulge; (j) extrusomes scattered throughout cytoplasm; (k) optical section showing macronuclear nodules and extrusomes; (l, m) left side views showing heteromorphic dorsal brush composed of short inflated bristles and ordinary somatic cilia (triangles); (n) left side view showing monokinetidal tail bristles (arrows) extending almost to posterior body end. CK, circumoral kinety; CV, contractile vacuole; DB, dorsal brush; EX, extrusomes; MA, macronuclear nodules/macronucleus; MT, monokinetidal tail bristles. Scale bars: a–g = 100 µm; h–n = 10 µm.
Figure 6 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 6. Spathidium papilliferum from life, Jungjok Mts. population (a–d) and Ssanggyesa temple population (e–j). (a, e) Right side view of representative individuals; (b, f–h) detail of anterior body portion showing oral bulge papillae (triangles) studded with extrusomes; (c) dorsal brush bristles; (d, i) extrusomes; (j) resting cyst. CV, contractile vacuole; DB, dorsal brush; EX, extrusomes; LD, lipid droplets. Scale bars: a, e = 100 µm; c = 5 µm; b, d, f–j = 10 µm.
Figure 2 in Linking morphology and molecules: integrative taxonomy of spathidiids (Protista: Ciliophora: Litostomatea) from Korea
Figure 2. Enchelys megaspinata sp. nov. from life (a, c–g) and after protargol impregnation (b, h–j). (a, b) Right side views showing general body organisation; (c) cortical granulation; (d) nuclear apparatus; (e) dorsal brush; (f) resting cyst; (g, j) details of anterior body portion showing oral extrusomes and pharyngeal basket; (h, i) dorsal and ventral views of ciliary pattern in anterior body portion. CV, contractile vacuole; DB, dorsal brush; EX, extrusomes; MA, macronuclear nodules/ macronucleus; MI, micronuclei/micronucleus; OB, oral bulge; PB, pharyngeal basket; SK, somatic kinety/somatic kineties. Scale bars: a, b = 100 µm; c–e = 5 µm; f = 50 µm; g–j = 10 µm.
FIGURE 3 in Species of the genus Eurydema (Hemiptera: Heteroptera: Pentatomidae) in Far East Asia: An integrated approach using morphological, molecular, and data crossing analyses for taxonomy
FIGURE 3. Interspecific copulation (E. pulchra♀ X E. gebleri♂) and comparison between the eggs from an interspecific copulation and normal eggs. A, copulating scene; B, normal eggs from intraspecific copulation (dominulus–group); C, shrunken eggs a minute after being laid; D, the same shrunken eggs changed color an hour after being laid.
FIGURE 2 in Species of the genus Eurydema (Hemiptera: Heteroptera: Pentatomidae) in Far East Asia: An integrated approach using morphological, molecular, and data crossing analyses for taxonomy
FIGURE 2. The Neighbor–Joining tree based on the DNA barcode region using the Kimura 2–parameter method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) is shown next to the branches. Capital letters representing each group (dotted box) are explained in the text.
FIGURE 5 in Species of the genus Eurydema (Hemiptera: Heteroptera: Pentatomidae) in Far East Asia: An integrated approach using morphological, molecular, and data crossing analyses for taxonomy
FIGURE 5. Interspecific copulation and life cycle of the dominulus–group. A, copulating scene (upper species is E. dominulus (male) and the lower one is E. pulchra (female) as determined by the traditional key); B, eggs; C, 1st instars; D, 2nd instars; E, 3rd and 4th instars; F, final instars.
FIGURE 2 in DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species
FIGURE 2. Animal and egg morphology by LM of paragenophores and hologenophores of Macrobiotus vladimiri from St. Ulrich (Germany). A: Macroplacoids (Faure-Berlese fluid, phase contrast); B: egg shell (hologenophore HM136934, Faure- Berlese fluid, DIC); C: egg shell (paragenophore, Faure-Berlese fluid, phase contrast). Scale = 10 µm.
FIGURE 5 in DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species
FIGURE 5. Animal and egg morphology by LM of paragenophores and hologenophores in Macrobiotus hufelandi. A-B: Specimens from Monte Rondinaio (Italy) (polyvinyl lactophenol, phase contrast). A: Placoids; B: egg shell (paragenophore). C-E: Specimens from Gotthard Pass (Faure-Berlese fluid). C: Macroplacoids (phase contrast); D: distal dishes in the egg shell (hologenophore HQ876594, DIC); E: egg shell reticulation (same hologenophore, phase contrast). Scale = 10 µm.
FIGURE 3 in DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species
FIGURE 3. Egg morphology by SEM of paragenophores. A: Macrobiotus hufelandi from St. Ulrich (Germany); B: M. hufelandi from Gotthard Pass (Switzerland); C: Macrobiotus vladimiri from St. Ulrich; D: Macrobiotus sandrae from St. Ulrich. Scale = 5 µm.
FIGURE 7 in DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species
FIGURE 7. Neighbor joining dendrogram computed on Kimura 2-parameters distances. Numbers in bold indicate bootstrap values. Acronyms as in Tables 2 and 3. Asterisks indicate hologenophore specimens (sensu Pleijel et al. 2008).
FIGURE 8. Kimura 2 in DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species
FIGURE 8. Kimura 2 -parameters genetic distances in all the samples, specimens and species of tables 2 and 3. The graph shows the frequency distribution of intraspecific (grey) and interspecific (black) genetic divergences. The attribution to a same or to a different species has been done on morphological basis. 392 intraspecific and 1204 interspecific comparisons were taken into account.
Figure 9. A in Integrative taxonomy uncovers high levels of cryptic species diversity in Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) and the description of a new species from Peninsular Malaysia
Figure 9. A, Hemiphyllodactylus sp. nov. 7 (LSUDPC 6668) from Chiang Mai, Chiang Mai Province, Thailand; photo by P.L. Wood. B, Hemiphyllodactylus sp. nov. 8 (USNM 570374) from Pyin-Oo-Lwin, Mandalay Division, Myanmar; photo by G. Zug.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.