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1,298 results for “Archive”
Data archiving and sharing survey
<p><span>Open data sharing</span> improves the quality and reproducibility of scholarly research<span>. </span>Open data are defined as data that can be freely used, reused, and redistributed by anyone. Open data sharing democratizes science by making data more equitably available throughout the world regardless of funding or access to other resources necessary for generating cutting-edge data.<span> For an interdisciplinary field like biological anthropology, data </span>sharing is critical since one person cannot easily collect data across multiple domains.<span> The goal of this paper is to encourage broader data sharing by exploring the state of data sharing in the field of biological anthropology. Our paper is divided into four parts: the first section describes the benefits, challenges, and emerging solutions to open data sharing; the second section presents the results of our data archiving and sharing survey that was completed by over 700 researchers; the third section presents personal experiences of data sharing by the authors; and the fourth section discusses the strengths of different types of data repositories and provides a list of recommended data repositories.</span></p> <p><span>The data archiving and sharing survey and the raw data collected from the survey are deposited here.</span></p>
Figure 3 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 3 - An updated database with final column titles and unique identifier added for each record.
Electronic Archives of Italian
<p>30.06.2000 Session 1: <strong>Electronic Archives of Italian</strong> - Chair Lou Burnard</p> <ul> <li>Valentina Pollidori / Pär Larson (Opera del Vocabolario Italiano): "Il Tesoro della Lingua Italiana delle Origini (TLIO): il progetto lessicografico e suoi risultati attuali"</li> <li>Mirko Tavosanis (Pisa): "La biblioteca italiana telematica e l'analisi linguistica"</li> <li>Giuseppe Gigliozzi (Roma): "Risorse linguistiche e letterarie in rete: l'esperienza di TIL"</li> </ul>
eDNA from archived leaves reveals no losses of α-diversity, but widespread community turnover and biotic homogenization as drivers of forest insect decline
<p>A major limitation of current reports on insect declines is the lack of standardized, long-term, and taxonomically broad time series. Here, we demonstrate the utility of environmental DNA from archived leaf material to characterize plant-associated arthropod communities. We base our work on several multi-decadal leaf time series from tree canopies in four land use types, which were sampled as part of a long-term environmental monitoring program across Germany. Using these highly standardized and well-preserved samples, we analyze temporal changes of diversity and relative biomass in communities of several thousand arthropod species belonging to 23 orders using multilocus metabarcoding and quantitative PCR. Our data do not support widespread declines of α-diversity or genetic diversity within species. Instead, we find a gradual community turnover, which results in temporal and spatial biotic homogenization. Colonization by novel widespread taxa and loss of range-restricted taxa cause spatial diversity loss. At the same time, increasingly similar species occurrences between consecutive sampling years cause a temporal decline of diversity. These effects are independent of land use and observed for all arthropod orders. Our results suggest that insect decline is more complex than mere α-diversity loss, but can be driven by β-diversity decay across space and time.</p>
DBnary in Ontolex, All Languages Archive 2017
<p>The DBnary dataset is an extract of Wiktionary data from many language editions in RDF Format. Since July 1st 2017, the lexical data extracted from Wiktionary is modeled using the ontolex vocabulary.</p> <p>This dataset contains the archive of all DBnary dumps of 2017 in Ontolex format containing lexical information from wiktionary dumps of 2017 (post July 1st).</p>
FIGURE 74 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 74. Mantidactylus inaudax in life, in dorsolateral and ventral view. (a,b) Adult male from a forest fragment west of Lake Alaotra, photographed in 2008. (c,d,e) Adult female from a forest fragment west of Lake Alaotra, photographed in 2008, and femoral gland closeup (e). (f,g) Adult male from a forest fragment west of Lake Alaotra, photographed in 2008. (h,i) Adult male from a forest fragment west of Lake Alaotra, photographed in 2008. (j,k,l) Adult female from Fierenana, photographed in 2003, and femoral gland closeup (l). (m,n,o) Adult male from Fierenana, photographed in 2003, and femoral gland closeup (o). All of these specimens correspond to collected voucher specimens but cannot be reliably assigned to specific voucher numbers.
FIGURE 64 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 64. Audiospectrogram and corresponding oscillogram of a 1000 ms section of a series of advertisement calls (five calls figured) of Mantidactylus biporus recorded on 31 October 2007 at Betampona (19°C air temperature).
FIGURE 44 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 44. Mantidactylus kortei sp. nov. from Andohahela in life, in dorsolateral and ventral view. All photographs taken in 2005. (a,b) Adult male (holotype ZSM 205/2005 = FGZC 2376). (c,d) Adult female (ZSM 204/2005 = FGZC 2375). (e) Female specimen (probably preserved in UADBA). Note the relatively broad and short head of the first two specimens and the more pointed head of the third specimen in (e) which however showed no difference to the other two specimens in the molecular markers analysed.
FIGURE 23 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 23. Preserved holotype specimens of M. steinfartzi sp. nov., the single newly named species in the M. ulcerosus clade. Scale bars equal 5 mm.
FIGURE 36 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 36. Mantidactylus noralottae from the Isalo massif in life, in dorsolateral and ventral view. (a,b) Adult female (tissue ACZC 7948; FAZC 14340). (c,d) Adult male (tissue ACZC 7947; FAZC 14339).
FIGURE 45 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 45. Audiospectrogram and corresponding oscillogram of one advertisement call tentatively assigned to Mantidactylus kortei, recorded on 27 January 2006 at Andohahela National Park (17.6°C air temperature). Recording bandpass-filtered at 500– 4000 Hz.
FIGURE 55 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 55. Mantidactylus marintsoai sp. nov. in life, in dorsolateral, dorsal and ventral view. (a) Unsexed adult (tissue THT 204, not collected). (b,c) Adult female (THT282, not collected). (d,e) Adult female (CURSA-A036/2021 = THC354). (f,g) Adult male (holotype CURSA-A033/2021 = THC301).
FIGURE 12 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 12. Audiospectrogram and corresponding oscillogram of two advertisement calls from a regular call series of Mantidactylus alutus, recorded on 21 January 2003 near Antoetra (20.5–21.0°C air temperature). Recording highpass-filtered at 375 Hz.
FIGURE 9 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 9. Preserved holotypes of newly named species and subspecies in the M. curtus clade. Scale bars equal 5 mm.
FIG. 5 in Reconstructing the genomic diversity of a widespread Sub-Saharan bat (Pteropodidae: Eidolon helvum) using archival museum collections
FIG. 5. Genotypes corresponding to Admixture plot at K = 9
FIG. 3. Graph indicating the appropriate K in Reconstructing the genomic diversity of a widespread Sub-Saharan bat (Pteropodidae: Eidolon helvum) using archival museum collections
FIG. 3. Graph indicating the appropriate K value where CV error is lowest from Admixture
Long-term environmental changes in the Canadian boreal zone: Synthesizing temporal trends from lake sediment archives to inform future sustainability
<ul> <li>Lead (Pb) concentration and chlorophyll <em>a</em> data</li> </ul> <p>Original publication: Gros, M., Zilkey D. R., Griffiths, K. T., Pham, J., MacKeigan, P. W., Taranu, Z. E., Aulard, C., Baud, A., Garner, R. E., Ghanbari, H., Lachapelle, M., Monchamp, M-È, Paquette, C., Antoniades, D., Francus, P., Smol, J. P. & Gregory-Eaves, I. (2023). Long-term environmental changes in the Canadian boreal zone: Synthesizing temporal trends from lake sediment archives to inform future sustainability. <em>Environmental Reviews</em>, <em>31</em>(3). https://doi.org/10.1139/er-2023-0006.</p>
NESPOMILA Open Data Archive
<p>This is an open archive of data related to the <em>New Speakers of Minority Languages: Proficiency, Variation, and Change </em>project (2021--2023), hosted at the Institute of Slavic Studies, Polish Academy of Sciences.</p> <p>Contents of the archive is detailed in the README.md and README.org files.</p> <p>The files contained in this archive were made at project end as per the funding agreement, however there's also a git repo for these data -- https://github.com/bobborges/nespomila -- check there for the most up-to-date versions of data; contribute to publicly available analyses by making a pull request.</p> <p> </p>
Podcast: Digitization, Archives, Use Cases. Tobias Wildi, Fachhochschule Graubünden
<p>Was sind die Grundlagen beim Digitalisieren? Entscheidungen, nachhaltige Strategien und Angebote für die Nutzenden. Über Daten- und Metadatenmodelle, die Anwendung semantischer Technologien in Gedächtnisinstitutionen und die langfristige Nutzbarhaltung digitaler Kulturgüter.</p> <p>What are the fundamentals of digitization? Decisions, sustainable strategies, and offers for users. About data and metadata models, the application of semantic technologies in memory institutions, and the long-term usability of digital cultural assets.</p> <p>Quali sono le regole di base della digitalizzazione? Decisioni, strategie sostenibili e offerte per gli utenti. Sui modelli di dati e metadati, sull'applicazione delle tecnologie semantiche nelle istituzioni della memoria e sulla fruibilità a lungo termine dei beni culturali digitali.</p> <p>Quelles sont les clés de la numérisation ? Des décisions, des stratégies durables et des offres pour les utilisateurs. Sur les modèles de données et de métadonnées, l'application des technologies sémantiques dans les institutions de mémoire et le maintien à long terme de l'utilité des biens culturels numériques.</p>
Archived Performance Measurement
<p>Performance violating measurement for the evaluation of RQ2&3</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.