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FIGURE 12 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 12. Male holotype of Boophis roseipalmatus sp. nov. (ZSM 211/2004) from Montagne d'Ambre National Park: (A) dorsolateral view; (B) ventral view.
FIGURE 3 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 3. Spectrograms and waveforms of calls of Boophis piperatus sp. nov. from near Vohiparara, Ranomafana National Park (recorded on 28 January 2004, air temperature 20–21°C): (A) call type 1, (B) call type 2 (see text).
FIGURE 16. Maximum parsimony 16S in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 16. Maximum parsimony 16S rRNA phylogram for species in the Boophis albilabris group. From 535 total characters, 445 were constant and 35 parsimony informative. MP searches retained 6 trees of which a strict consensus is shown. Consensus support values higher than 50, from 2000 bootstrap replicates, are shown; an asterisk indicates Bayesian posterior probabilities equal or higher than 95%. The species newly described herein is in bold.
FIGURE 4 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 4. Dorsolateral view (A) and ventral view (B) of male of Boophis andrangoloaka (FGZC 2139) from Ambohitantely; (C) dorsolateral view of Boophis andrangoloaka (ZFMK 60134) from Ambohitantely; dorsolateral view (D) and ventral view (E) of a dark coloured specimen of Boophis rhodoscelis from Ranomafanakely; (F) dorsolateral view of a light coloured specimen of Boophis rhodoscelis from Ranomafanakely.
Figure 9. A, B, Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 9. A, B, Enigmaticolus nipponensis comb. nov. A, holotype of Enigmaticolus monnieri (MNHN IM-2000–20464), Tulear, Madagascar, trawled by commercial fishery vessels (shrimpers), Mozambique Channel, 800 m deep, shell length 63.7 mm (photo courtesy of Manuel Caballer). B, MIRIKY station CP3279 (15°22'S, 45°57'E), between Majunga and CapSaint-André, Madagascar, 780–1020 m deep, shell length 99.4 mm (MNHN IM-2009–7079; photo courtesy of Delphine Brabant and Barbara Buge). C, Enigmaticolus marshalli. Holotype (NMNZ M.274915), NIWA 32231 station 2007204 (25°48'S, 177°10'W), Monowai Caldera, south-south-west of Tonga, Kermadec Ridge, New Zealand, 1026 m deep, shell length 90.1 mm. D, Enigmaticolus voluptarius, holotype (MNHN IM-2000–27067), EBISCO station CP2554 (21°05'S, 158°33'E), Bellona, New Caledonia, 704–720 m deep, shell length 77.8 mm. Scale bars = 2 cm.
Figure 7 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 7. Radular variation in Enigmaticolus nipponensis comb. nov. A, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep (NSMT-Mo 79172). B, 'F site' seep, South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep (HKBU Mol-2020010001). Scale bars = 200 μm.
Figure 8 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 8. Maximum likelihood molecular phylogenetic tree of Buccinidae based on a 645-bp alignment of the COI gene. Node values are bootstrap values, only those above 70 are shown. Scale bars indicate the number of substitutions per site. Numbers appearing at the end of the names are the GenBank accession numbers. SCS, South China Sea.
Figure 5. A–C, Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 5. A–C, Enigmaticolus nipponensis comb. nov. A, 'F site' methane seep, South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, shell length 94.9 mm (HKBU Mol-2020010001). B, 'F site' methane seep, South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, shell length 87.5 mm (HKBU Mol-2020010002). C, 'F site' methane seep, South China Sea (22°6.912'N, 119°17.104'E), 1127 m deep, shell length 91.4 mm (HKBU Mol-2020010003). D, Thermosipho auzendei, holotype (MNHN IM-2000–7049), Rehu site, East Pacific Rise at 17°S (17°24.85'S, 113°12.15'W), 2578 m deep, shell length 62.0 mm (photo courtesy of Philippe Maestrati). Scale bars = 2 cm.
Figure 3. Enigmaticolus nipponensis comb. nov. A in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 3. Enigmaticolus nipponensis comb. nov. A, holotype (NSMT-Mo 71689), Iheya North Original site, Iheya North hydrothermal field (27°47.180'N, 126°54.149'E), 1049 m deep, shell length 93.8 mm (photo courtesy of Kazunori Hasegawa). B, paratype #4 (JAMSTEC 009556), Sumisu Caldera, Izu-Ogasawara Arc (31°47.180'N, 126°54.149'E), 1049 m deep, shell length 90.1 mm (photo courtesy of Takashi Okutani). C, Iheya North Original site, Iheya North hydrothermal field (27°47.4495'N, 126°53.8149'E), 1002 m deep, shell length 80.2 mm (NSMT-Mo 79171). D, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep, shell length 81.2 mm (NSMT-Mo 79171). Scale bars = 2 cm.
Figure 1 in Diversity of the rotifer Brachionus plicatilis species complex (Rotifera: Monogononta) in Iran through integrative taxonomy
Figure 1. Nine linear measurements of the lorica of Brachionus rotifers used in this study, named from (a) to (i) as in Ciros-Pérez et al. (2001).
Figure 5 in Diversity of the rotifer Brachionus plicatilis species complex (Rotifera: Monogononta) in Iran through integrative taxonomy
Figure 5. Output of the K-means partitioning and choice of the best fit according to the Calinski criterion. The greyscale codes for the K-means partitioning indicate the identity of each individual (objects on the x-axis) in the groups from 2 to 9 on the y-axis. Individuals are numbered from 1 to 187 as in Appendix S2 (1 to 20 is Brachionus 'Austria', 21 to 61 is B03, 62 to 167 is Brachionus plicatilis s.s., and 168 to 187 is Brachionus 'Tiscar').The most likely value of the criterion is marked as a filled circle.
Figure 2 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 2. In situ observations of deep-sea whelks as indicated by white arrows. A, Natsu site, Iheya North hydrothermal field (27°46.8522'N, 126°54.0584'E), 1078 m deep, by JAMSTEC ROV Hyper-Dolphin. B, Iheya North Original site, Iheya North hydrothermal field (27°47.4495'N, 126°53.8149'E), 1002 m deep. C, Aki site, Iheya North hydrothermal field (27°46.103'N, 126°54.090'E), 1086 m deep. D, E, in mussel (Bathymodiolus spp.) bed, 'F site', South China Sea (22°06.945'N, 119°17.128'E), 1128 m deep, by ROV ROPOS. F, on a authigenic carbonate cliff near edge of the seep, 'F site', South China Sea (22°6.912'N, 119°17.104'E), by ROV ROPOS.
Figure 1 in Integrative taxonomy of enigmatic deep-sea true whelks in the sister-genera Enigmaticolus and Thermosipho (Gastropoda: Buccinidae)
Figure 1. Map of the north-western Pacific showing the relevant vent and seep sites where new materials were collected for the present study. A, overview. B, close-up of the Izu-Bonin Arc area. C, close-up of the Okinawa Trough area. Triangles indicate hydrothermal vent fields and circles indicate hydrocarbon seep sites. 1, Myojin Knoll vent field; 2, Sumisu Caldera vent site; 3, Iheya North vent field; 4, Kuroshima Knoll seep site; 5, 'F site' seep, South China Sea. Maps generated with Mercator projection using the General Bathymetric Chart of the Oceans (GEBCO; https://www.gebco.net/; date accessed August 13, 2020) grid display software and GEBCO one-arc minute interval grid.
Figure 9. The 50 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 9. The 50% majority rule consensus trees from Bayesian analysis generated from the 18S rRNA gene data set with a transitional model of invariable sites and a gamma-shaped distribution model. Posterior probabilities more than 65% are given for appropriate clades; bootstrap values greater than 50% are given on appropriate clades in the maximum likelihood analysis. Newly obtained sequences are in bold letters.
Figure 7. The 50 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 7. The 50% majority rule consensus trees from Bayesian analysis generated from the D2–D3 of 28S rRNA gene data set with a general time reversible of invariable sites and a gamma-shaped distribution model. Posterior probabilities more than 65% are given for appropriate clades; bootstrap values greater than 50% are given on appropriate clades in the maximum likelihood analysis. Newly obtained sequences are in bold letters.
Figure 6 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 6. Scanning electron microscope photographs of Tylenchorhynchus mediterraneus sp. nov. A, female anteri- or region; B, C, en face view showing oral (oa) and amphidial (am) apertures; D, lateral fields at mid-body; E, female tail showing anus (a). Scale bars: A = 20 μm; B, C, D = 10 μm; E = 20 μm.
Figure 4 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 4. Line drawings of Tylenchorhynchus mediterraneus sp. nov. A, female pharyngeal region; B, vulval region showing part of gonads and spermatheca; C, female lip region; D, details of lip region showing oral disc (en face view); E, F, male tails showing spicules and gubernaculum; G–I, female tails, showing areolated lateral fields and phasmid in the middle.
Figure 8. The 50 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 8. The 50% majority rule consensus trees from Bayesian analysis generated from the ITS rRNA gene data set with a transversional model of invariable sites and a gamma-shaped distribution model. Posterior probabilities more than 65% are given for appropriate clades; bootstrap values greater than 50% are given on appropriate clades in the maximum likelihood analysis. Newly obtained sequences are in bold letters.
Figure 3 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 3. Scanning electron microscope photographs of Bitylenchus hispaniensis sp. nov. A, female lip region; B, en face view showing oral (oa) and amphidial (am) apertures; C, lateral fields at mid-body; D, E, female tails showing anus (a) and phasmid (ph); F, male tail showing spicules (sp). Scale bars: A, C = 10 μm; B = 5 μm; D–F = 20 μm.
Figure 2 in Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny
Figure 2. Photomicrographs of Bitylenchus hispaniensis sp. nov. A, whole body of female and male; B, female pharyngeal region; C, female lip region; D, vulval region; E, female tails; F, male tail; G, lateral fields at mid-body. Scale bars: A = 50 μm, B, E = 10 μm; C, D, G = 5 μm; F = 20 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.