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155 results for “28S”
Figure 3 in A thousand and one wasps: a 28S rDNA and morphological phylogeny of the Ichneumonidae (Insecta: Hymenoptera) with an investigation into alignment parameter space and elision
Figure 3. Light photomicrographs of base of ovipositor sheath following maceration in KOH (aq.) and light staining with chlorazol black. (A) Odontocolon (Xoridinae); (B) Phaenolobus (Acaenitinae); (C) Nonnus (Nonninae); (D) Hymenoepimecis (Pimplinae); (E) Coleocentrus (Acaenitinae).
Figure 1 in A thousand and one wasps: a 28S rDNA and morphological phylogeny of the Ichneumonidae (Insecta: Hymenoptera) with an investigation into alignment parameter space and elision
Figure 1. Plot of log10 number of genera sequenced versus number of currently recognized genera in each subfamily (number of recognized extant genera from Yu and Horstmann 1997; Yu et al. 2005). The point at the origin represents 15 monotypic subfamilies.
Figure 19 in A thousand and one wasps: a 28S rDNA and morphological phylogeny of the Ichneumonidae (Insecta: Hymenoptera) with an investigation into alignment parameter space and elision
Figure 19. Summary of recovery of selected ophioniformes clades as monophyletic in most parsimonious trees from analysis of combined morphological and CLUSTAL-aligned molecular data showing effects of different gap-opening and gap-extension values and treatment of gaps as informative or uninformative. Groups are coloured if they were recovered in any of the most parsimonious trees obtained from a particular combination of parameters.
Figure 17 in A preliminary molecular phylogeny of the Sigalphinae (Hymenoptera: Braconidae), including Pselaphanus Szépligeti, based on 28S rDNA, with descriptions of new Afrotropical and Madagascan Minanga and Malasigalphus species
Figure 17. Summaries of selected phylogenetic relationships recovered from parsimony analysis of multiple alignments obtained using different gap opening and gap extension parameter combinations in Clustal W. Half-filled cells indicate that the given relationship was recovered in some but not all of the MPTs obtained with that parameter combination.
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S in Reclassification of Bracon mendocinus, a gall-associated doryctine wasp, and description of a new closely related species of Allorhogas (Hymenoptera: Braconidae)
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S and COI datasets, including all the available Allorhogas sequences, those of the other gall-associated braconids and Heterospilus as the outgroup. The two specimens investigated in this paper are indicated in bold type. The numbers above each branch indicate the observed parsimony changes.
Figures 14–16. Female M in A preliminary molecular phylogeny of the Sigalphinae (Hymenoptera: Braconidae), including Pselaphanus Szépligeti, based on 28S rDNA, with descriptions of new Afrotropical and Madagascan Minanga and Malasigalphus species
Figures 14–16. Female M. roa sp. nov. (14) wings; (15) foretarsal claws; and (16) carapace, median tergites 2 and 3.
Figure 18 in A preliminary molecular phylogeny of the Sigalphinae (Hymenoptera: Braconidae), including Pselaphanus Szépligeti, based on 28S rDNA, with descriptions of new Afrotropical and Madagascan Minanga and Malasigalphus species
Figure 18. Bootstrap consensus tree derived from analysis of elised matrix comprising all 21 individual multiple alignments.
FIGURE 10. 28S in Studies on the genus Aporcelaimellus Heyns, 1965 (Nematoda, Dorylaimida, Aporcelaimidae). Four typical species with simple uterus from Southern Iberian Peninsula
FIGURE 10. 28S rDNA gene sequences of Aporcelaimellus waenga (Yeates, 1967) Peña-Santiago & Ciobanu, 2008.
Figure 3. Bayesian phylogram obtained with combined 18S and 28S in Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada, Heterotardigrada)
Figure 3. Bayesian phylogram obtained with combined 18S and 28S rRNA, aligned with MUSCLE and trimmed with GBlocks, using all taxa considered in the present study (i.e. outgroups and eutardigrades from Table 3, heterotardigrades from Table 2, and Echiniscus species from Table 1). Above branches are posterior probabilities obtained in the Bayesian analysis are provided. Below branches are bootstrap support values from the ML analysis.
Figure 2. Bayesian phylogram obtained with 18S and 28S in Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada, Heterotardigrada)
Figure 2. Bayesian phylogram obtained with 18S and 28S rRNA information combined, using all taxa considered in the present study (i.e. outgroups and eutardigrades from Table 3, heterotardigrades from Table 2, and Echiniscus species from Table 1). Above branches are posterior probabilities obtained in the Bayesian analysis. Below branches two values are provided: bootstrap support values from the ML analysis, and bootstrap support values from the parsimony analysis. A dash indicates absence of data for a given branch and analysis that had support in other analyses. Tardigrade classes (Heterotardigrada, Eutardigrada), orders (Apochela, Parachela, Arthrotardigrada, Echiniscoidea), and the family Echiniscidae are indicated.
FIG. 1 in New indications of the phylogenetic anity of Spongosorites suberitoides Diaz et al., 1993 (Porifera, Demospongiae) as revealed by 28S ribosomal DNA
FIG. 1. Strict consensus tree of two most parsimonious topologies. Numbers above the branches represent bootstrap support for the various clades with 1000 iterations under maximum parsimony, numbers below the branches are bootstrap support from 1000 iterations under distance matrix (and 100 iterations under maximum likelihood).
Figure 3. 28S in A molecular and morphological reassessment of the phylogeny of the subfamily Ophioninae (Hymenoptera: Ichneumonidae)
Figure 3. 28S phylogeny; highlighted are the genus-groups discussed in the text (X scale bars are mean nucleotide substitution rates per site, nodes with posterior probability, pp> 0.90 are considered as significant).
FIGURE 12. Bayesian tree for 28S in Molecular and morphological studies identify a new genus within the Heterolepismatinae (Zygentoma: Lepismatidae)
FIGURE 12. Bayesian tree for 28S data only. Taxon names include BOLD Sample ID, museum accession number and species with locality in parentheses. Numbers above branches are Bayesian posterior probability and RAxML bootstrap percentage, shown only if both numbers are greater than or equal to 0.9 and 70, respectively.
FIGURE 2. 28S in Twofold or threefold complication: Phrikoceros or Tytthosoceros (Platyhelminthes Pseudocerotidae) in South America? Short integrative revision of both genera
FIGURE 2. 28S rDNA ML phylogeny of available sequences of Tytthosoceros and related species. Stars relate to types of tentacles of Figure 1.
FIGURE 13.Maximum Likelihood consensus tree generated from the 28S in A revision of the genus Isotomurus (Collembola: Isotomidae) in northern Iran using molecular evidence
FIGURE 13.Maximum Likelihood consensus tree generated from the 28S gene dataset with the GTR+I+G model. Bootstrap values more than 60% are given for appropriate clades; newly obtained sequences are in bold letters, others are from GenBank (NCBI).
Figure 1. The 28S in Evidence Of A Putative Novel Species Of Avian Schistosome Infecting Planorbella Trivolvis
Figure 1. The 28S phylogenetic tree of Schistosomatidae. Nodal sup- port indicated by Bayesian posterior probabilities. GenBank accession numbers precede taxon names. The representative sample from this study is in bold.
FIGURE 1. Maximum Likelihood tree generated from a combined dataset using ITS and 28S in A new species of Boletinellus (Boletinellaceae, Boletales) from India
FIGURE 1. Maximum Likelihood tree generated from a combined dataset using ITS and 28S sequences. Bootstrap values (>50 %) are indicated above/below branches. The new species is indicated in bold.
FIGURE 7. Phylogenetic maximum likelihood reconstruction using partial 28S in A new species of Cycloporus from the Adriatic Sea, with an updated phylogeny of the families Euryleptidae and Stylostomidae (Polycladida, Platyhelminthes)
FIGURE 7. Phylogenetic maximum likelihood reconstruction using partial 28S sequences (accession numbers in brackets) of polyclads, rooted with Macrostomum lignano; branches other than Euryleptidae and Stylostomidae collapsed. Bootstrap nodal support of 200 non-parametric bootstrap replicates. Full tree in Suppl. Mat. 2. Cycloporus pinkipus sp. n. marked in pink. Additional representatives of Cycloporus written in red. Representatives of Eurylepta written in light green. Branches of Euryleptidae in light green. Branches of Stylostomidae in light blue. Branches of Pseudocerotidae in purple. Scale bar indicates the number of substitutions per site.
Figure 3 in Molecular identification of eriophyoid mites in Thrace using the 28S and COI genes
Figure 3. Phylogenetic tree of the family Eriophyoidea based on COI. Bootstrap values lower than 50% are not shown.
Figure 2 in Molecular identification of eriophyoid mites in Thrace using the 28S and COI genes
Figure 2. Phylogenetic tree of the family Eriophyoidea based on 28S rRNA. Bootstrap values lower than 50% are not shown.
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OpenNeuro
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