Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
29,145
datasets available to search
ShareScore release 0.7.1
Dataset results
29,145 results for “Association”
Data associated with following publication: "In situ optical sub-wavelength thickness control of porous anodic aluminum oxide"
<p>Data associated with following publication: "In situ optical sub-wavelength thickness control of porous anodic aluminum oxide" (DOI: <a href="https://doi.org/10.3762/bjnano.15.12" target="_blank" rel="noopener">https://doi.org/10.3762/bjnano.15.12</a>)</p>
Metagenome-Assembled Genomes Abundance & Activity Tables. Environmental Parameters Associated with the dataset.
<p>Lake Mendota, WI, USA, is a temperate lake subject to annual temperature and oxygen fluctuations. Each summer, the water column becomes anoxic (no-oxygen). In 2020, we sampled the lake at weekly intervals, at different depths (5, 10, 15, 20 and 23.5m). For each time+depth sample, we collected metagenomes, viromes and metatranscriptomes. Environmental data profiles were collected on-site for each sampling day. </p> <p>Following standard metagenomic binning best practices, we obtained 431 metagenomes-assembled-genomes (MAGs).</p> <p>This record comprises the microbial abundance and expression table for these MAGs, and the environmental profiles collected each day.</p>
Behavioral and fMRI Data: Nurturing the reading brain: Home literacy practices are associated with children's neural response to printed words through vocabulary skills
<p>This is the behavioral and fMRI dataset described in "Nurturing the reading brain: Home literacy practices are associated with children’s neural response to printed words through vocabulary skills". </p> <p>Because of anonymization concerns within the framework of EU privacy regulations (<a href="https://gdpr-info.eu">GDPR</a>), we cannot provide raw MRI data. Therefore, the fMRI data consists of individual pre-processed volumes, normalized into the MNI template (see paper for details about the preprocessing pipeline). Anonymized behavioral data and first level analyses are also provided for each participant (SPM.mat file as well as beta, con, spmT, RPV and ResMS files). Note that the dataset also include runs and GLM results for a third task (Dots) that was not analyzed in the paper. Finally, the <a href="https://www.psychopy.org">PsychoPy</a> implementation of the tasks is also provided. If you have any questions, please send an email to jerome.prado [at] univ-lyon1.fr. </p> <p><strong>IMPORTANT:</strong></p> <p>In accordance with EU privacy regulations, we ask that you sign and return a Data Use Agreement (DUA) before downloading the data. You can download the DUA <a href="https://zenodo.org/record/4965716/files/DUA.pdf?download=1">here</a>. Please, sign it and send it to jerome.prado [at] univ-lyon1.fr.</p>
COVID19 Flow-Maps Mobility-Associated-Risk
<p><strong>The Mobility Associated Risk</strong></p> <p>The Mobility Associated Risk is a risk score combines mobility and COVID-19 incidence to estimate how many cases could theoretically be exported/imported between different origin-destination pairs of regions.</p> <p>For more information about how the MAR is calculated visit: <a href="https://flowmaps.life.bsc.es/flowboard/board_what_is_risk#what_is_risk">https://flowmaps.life.bsc.es/flowboard/board_what_is_risk#what_is_risk</a></p> <p>Dashboard The Mobility Associated Risk combines mobility and COVID-19 incidence to estimate how many cases could theoretically be exported/imported between different origin-destination pairs of regions.</p> <p>For more information about how the MAR is calculated visit: <a href="https://flowmaps.life.bsc.es/flowboard/board_what_is_risk#what_is_risk">https://flowmaps.life.bsc.es/flowboard/board_what_is_risk#what_is_risk</a></p> <p>Dashboard <a href="https://flowmaps.life.bsc.es/flowboard/">https://flowmaps.life.bsc.es/flowboard/</a></p>
Associating Land Cover Changes with Climate Sensitive Infection in Fennoscandia, as part of the CLINF project: Example on Tick-Borne Diseases
<p>The data was used as part of the IJERPH article below. The GeoJSON and shapefile ZIP archive are two versions of the same geometries to represent geographically the districts whole of Fennoscandia and the Russian districts of Leningrad, St Petersburg, Vologda, Arkhangelsk, Nenetsia, Murmansk, Karelia, and Komi, making up 69 districts used for the analysis.</p> <p>Leibovici DG, Bylund H, Björkman C, Tokarevich N, Thierfelder T, Evengård B, Quegan S (2021). Associating Land Cover Changes with Patterns of Incidences of Climate Sensitive Infections: An Example on Tick-Borne Diseases in the Nordic Area. <strong><em>International Journal of Environmental Research and Public Health, 18(20):10963. <a href="https://doi.org/10.3390/ijerph182010963">doi:10.3390/ijerph182010963</a></em></strong></p> <p>Special Issue: <a href="https://www.mdpi.com/journal/ijerph/special_issues/Climate-Change_Effects">https://www.mdpi.com/journal/ijerph/special_issues/Climate-Change_Effects</a></p> <p> </p>
De Obaldia et al. Differential mosquito attraction to humans is associated with skin-derived carboxylic acid levels
<p>These supplementary files accompany the manuscript by De Obaldia et al. entitled "Differential mosquito attraction to humans is associated with skin-derived carboxylic acid levels." This includes all raw data in the paper, supplementary data, and instructions for the mosquito behavioral assays.</p> <p> </p> <p>On January 2, 2023 we added one new data file and a .readme to explain changes between the original pre-print and the published peer-reviewed version of the paper https://pubmed.ncbi.nlm.nih.gov/36261039/</p>
Data set for publication: Determination of Virulence-Associated Genes and Antimicrobial Resistance Profiles in Brucella Isolates Recovered from Humans and Animals in Iran Using NGS Technology
<p>This dataset includes information on resistance profiling, as well as antimicrobial resistance (AMR) genes and virulence-related factors that were identified in <em>Brucella</em> isolates recovered from humans and animals in different regions of Iran using classical phenotyping and next-generation sequencing (NGS) technology.</p>
Environmental data associated to particular health events example dataset
<p>The data represents and example output for environmental data (i.e. climate and pollution) linked with individual events through <strong>location</strong> and <strong>time</strong>. The linkage is the result of a semantic query that integrates environmental data <strong>within an area relevant to the event</strong> and selects a <strong>period of data before the event</strong>.</p> <p>The resulting event-environmental linked data contains:</p> <ul> <li>The data for analysis as a data table (.csv) and graph (.ttl)</li> <li>The metadata describing the linkage process and the data (.csv and .ttl)</li> <li>The interactive report to explore the (meta)data (.html)</li> </ul> <p>The graph files are ready to be shared and published as Findable, Accessible, Interoperable and Reusable (FAIR) data, including the necessary information to be reused by other researchers in different contexts.</p>
15000 Ellipsoidal Binary Candidates in TESS: Associated Tables
<p>A catalogue of 15779 candidate ellipsoidal binary systems, identified from the first two years of TESS full-frame images.</p> <p>Table 2 contains the 'BEER' score applied to approximately 8,000,000 input TESS targets.</p> <p>Table 3 contains the details of the 15779 selected candidates.</p> <p>Full details of both tables, and the selection process, can be found in the associated paper.</p> <p>https://arxiv.org/abs/2211.06194</p>
nanoindentation data associated with the publication "On the elastic microstructure of bulk metallic glasses" in Materials&Design 2023
<p>This dataset consists of indentation data measured with a conospherical tip in a Hysitron-Bruker TI980 Nanoindenter on the surface of a <100> Silicon wafer and a polished cross-sectional cut of a Zr65Cu25Al10 bulk metallic glass.</p> <p>It is associated with the following publication: <br>Birte Riechers, Catherine Ott, Saurabh Mohan Das, Christian H. Liebscher, Konrad Samwer, Peter M. Derlet and Robert Maass "On the elastic microstructure of bulk metallic glasses" Materials and Design 229, (2023) 111929. https://doi.org/10.1016/j.matdes.2023.111929</p> <p>All experimental information can be found in this paper and in the accompanying supplementary information.</p> <p>This electronic version of the data was published on the "Zenodo Data repository" found at http://zenodo.org/deposit in the community "Bundesanstalt fuer Materialforschung und -pruefung (BAM)".</p> <p>The authors have copyright to these data. You are welcome to use the data for further analysis, but are requested to cite the original publication whenever use is made of the data in publications, presentations, etc. </p> <p>Any questions regarding the data can be addressed to birte.riechers@bam.de who would also appreciate a note if you find the data useful.</p> <p>____________________________________________________________________</p> <p>The data format is defined as described below:</p> <p>In total, Fifteen text files exist that result in five different data sets.</p> <p>Two data sets represent measurements on Silicon, these are specifically the topography (mapped height profile) and indentation modulus (Si-topography.txt and Si-modulus.txt). The connected lateral information of these mapped quantities (i.e. Si-X_topography.txt and Si-Y_topography.txt; Si-X_modulus.txt and Si-Y_modulus.txt). This amounts to six .txt files connected to measurements on Silicon.</p> <p>Three data sets represent measurements on the Zr65Cu25Al10 bulk metallic glass. These are specifically the topography (MG-topography.txt), the indentation modulus (MG-modulus.txt), and the curvature-corrected indentation modulus (MG-curvcorr_modulus.txt). The connected lateral information of these mapped quantities (i.e. MG-X_topography.txt and MG-Y_topography.txt; MG-X_modulus.txt and MG-Y_modulus.txt; MG-X_curvcorr-modulus.txt and MG-Y_curvcorr-modulus.txt). This amounts to nine .txt files connected to measurements on the metallic glass.</p> <p>The files are plain text files with the data points separated by commata. Topography data is stated in units of Nanometer, modulus data is stated relative to its mean as unit-less values.</p> <p>Beside the .txt files, one figure (.pdf) with a plot of each data set is provided for reference, and the python code (Riechers_OnTheElasticMicrostructureOfBulkMetallicGlasses_zenodo.ipynb) generating these figures from the data sets is uploaded to this repository as well.</p>
Protocol for a systematic review: association between airborne pollen, intermittent allergic rhinitis and blood pressure
<p>Previous epidemiological studies have found an increased risk of cardiovascular morbidity and mortality following days with heightened pollen exposure and suggested that intermittent allergic rhinitis might be associated with blood pressure. Pollen sensitization and subsequent pollen exposure cause local inflammation and cytokine release in individuals with intermittent allergic rhinitis (pollen allergy). Inflammatory mediators can travel throughout the body, hence providing the physiologic basis by which pollen allergy may lead to systemic inflammation, which is known to be a risk factor for cardiovascular events. However, the findings regarding the potential association between intermittent allergic rhinitis, pollen exposure, and cardiovascular health are not fully conclusive. To date, no systematic review has been published on this topic.</p> <p>This systematic review seeks to answer: Are exposure to airborne pollen and intermittent allergic rhinitis associated with blood pressure? Secondary questions include: (1) Are there personal characteristics (sex, age) which modify a potential association between intermittent allergic rhinitis or pollen exposure with blood pressure and/or hypertension? (2) What research gaps exist in our understanding of how intermittent allergic rhinitis, pollen exposure, and cardiovascular health are interrelated?</p> <p>Published herein are:</p> <ul> <li>Protocol for the systematic review, including the search strategy</li> <li>Supplement 1: PROSPERO registration</li> <li>Supplement 2: Data extraction table</li> <li>Supplement 3: Risk of bias assessment strategy</li> <li>Supplement 4: Risk of bias assessment tool</li> </ul>
Genome-wide association study of full body nevus count in the Brisbane Twin Nevus Study (BTNS)
<p>The project uses the Brisbane Twin Nevus Study (BTNS) (N=3863)) to compare nevus counts on different anatomical sites to assess which anatomical site serves as best proxy for counting nevi on the whole body.In the project, a GWAS of nevus count on the whole body and GWAS of nevus count on the outer arm are performed.Here is the GWAS of total nevus count.</p> <p>Sample: GWAS analysis only includes samples of European ancestry. total nevus count were counted by trained research nurse.</p> <p>Genotype: All genotypes were imputed to a human haplotype map (HapMap) reference panel. Genome-wide association analyses were performed using Genome-wide Efficient Mixed model Association (GEMMA), which can account for genetically related individuals such as twins and siblings. Sex, age, age2, sex*age, sex*age2, sunburn, BSA, sun exposed hours weighted by UV index and 5 PCs, additionally two batch effect variables; were included as covariates. SNP imputation quality filter retained SNP with an INFO > 0.3. minor allele frequency frequency filter was applied to retain SNP MAF > 0.1</p> <p>Columns include:</p> <p>CHR: Chromosome</p> <p>BP: Base pair</p> <p>SNP: rsID</p> <p>A1: Effect allele</p> <p>A2: Non-effect allele</p> <p>A1FQ: Effect allele frequency</p> <p>HWE: Hardy-Weinberg Equilibrium</p> <p>BETA: Effect estimate (of effect allele_</p> <p>SEB: Standard error of beta</p> <p>PRB: P value</p> <p>N: Per SNP sample size</p>
Brain Ages Derived from Different MRI Modalities are Associated with Distinct Biological Phenotypes
<p><strong>Abstract</strong></p> <p>Brain ageing is a highly variable, spatially and temporally heterogeneous process, marked by numerous structural and functional changes. These can cause discrepancies between individuals’ chronological age and the apparent age of their brain, as inferred from neuroimaging data. Machine learning models, and particularly Convolutional Neural Networks (CNNs), have proven adept in capturing patterns relating to ageing induced changes in the brain. The differences between the predicted and chronological ages, referred to as brain age deltas, have emerged as useful biomarkers for exploring those factors which promote accelerated ageing or resilience, such as pathologies or lifestyle factors. However, previous studies rely only on structural neuroimaging for predictions, overlooking potentially informative functional and microstructural changes. Here we show that multiple contrasts derived from different MRI modalities can predict brain age, each encoding bespoke brain ageing information. By using 3D CNNs and UK Biobank data, we found that 57 contrasts derived from structural, susceptibility-weighted, diffusion, and functional MRI can successfully predict brain age. For each contrast, different patterns of association with non-imaging phenotypes were found, resulting in a total of 191 unique, statistically significant associations. Furthermore, we found that ensembling data from multiple contrasts results in both higher prediction accuracies and stronger correlations to non-imaging measurements. Our results demonstrate that other 3D contrasts and modalities, which have not been considered so far for the task of brain age prediction, encode different information about the ageing brain. We envision our work as being the starting point for future investigations into the causal links underpinning the observed brain age deltas and non-imaging measurement associations. For instance, drug effects can be monitored, given that certain medications correlated with accelerated brain ageing. Furthermore, continued development of brain age models could facilitate their deployment in clinical trials for recruitment and monitoring, and hospitals for diagnostic and screening tasks.</p> <p><strong>Data Description</strong></p> <p>This dataset contains the full correlation results with all nIDPs in the UK Biobank. These are presented in datasets split by sex in Female and Male subjects. For easier data manipulation, two smaller datasets have also been made available, containing just those correlation which pass the False Discovery Rate (FDR) threshold. </p> <p>As experiments were also conducted for ensembles using multiple contrasts, similar datasets are provided for those.</p> <p>Finally, global datasets are also provided. These are the concatenation of the associations contained in the Male and Female datasets.</p> <p><strong>Paper & Code</strong></p> <p>The original paper for this article can be accessed here:</p> <ul> <li><a href="https://ieeexplore.ieee.org/abstract/document/10196736">https://ieeexplore.ieee.org/abstract/document/10196736</a></li> </ul> <p>To access the codes relevant for this project, please access the project GitHub Repos:</p> <ul> <li><a href="https://github.com/AndreiRoibu/AgeMapper">https://github.com/AndreiRoibu/AgeMapper</a></li> </ul> <p>If using this work, please cite it based on the above paper, or using the following BibTex:</p> <pre><code class="language-markdown">@inproceedings{roibu2023brain, title={Brain Ages Derived from Different MRI Modalities are Associated with Distinct Biological Phenotypes}, author={Roibu, Andrei-Claudiu and Adaszewski, Stanislaw and Schindler, Torsten and Smith, Stephen M and Namburete, Ana IL and Lange, Frederik J}, booktitle={2023 10th IEEE Swiss Conference on Data Science (SDS)}, pages={17--25}, year={2023}, organization={IEEE}, doi={10.1109/SDS57534.2023.00010} }</code></pre> <p> </p> <p><strong>Data Access</strong></p> <p>The data for this project is freely available upon application at the UK Biobank. For more information regarding the individual nIDPs, please access the UK Biobank Showcase website at: https://biobank.ctsu.ox.ac.uk/showcase/search.cgi</p> <p><strong>Funding</strong></p> <p>ACR is supported by EPSRC Grant EP/S024093/1, F. Hoffmann-La Roche AG and a 2021 Industrial Fellowship offered by the Royal Commission for the Exhibition of 1851. SMS is supported by a Wellcome Trust Collaborative Award 215573/Z/19/Z. AILN is grateful for support from the Academy of Medical Sciences under the Springboard Awards scheme (SBF005/1136), and the Bill and Melinda Gates Foundation. FJL is supported by a Wellcome Trust Collaborative Award (215573/Z/19/Z). The WIN is supported by core funding from the Wellcome Trust (203139/Z/16/Z). The computational aspects were supported by the Wellcome Trust (203141/Z/16/Z) and the NIHR Oxford BRC. Corresponding authors: ACR (andreiroibu@icloud.com), SA (stanislaw.adaszewski@roche.com) and AILN (ana.namburete@cs.ox.ac.uk).</p>
Radar-derived storm characteristics and convective diagnostics associated with hourly maximum measured wind gusts around Australia
<p>The data in this record describes various characteristics associated with hourly measured surface wind gusts across various locations in Australia, with these characteristics and data sources described below.</p> <p>This record provides all data used in the preparation of Brown et al. (2023a), except for lightning data that can be obtained from the <a href="https://wwlln.net/">World Wide Lightning Location Network archive</a></p> <p><strong>Record contents</strong></p> <ul> <li><em>gust_observations.zip</em><br> Within this zip archive, a <em>.csv</em> file is provided for wind gust observations, along with associated storm statistics from radar, and convective diagnostics from a global reanalysis. These data are provided for each of the 20 radar domains listed in Brown et al. (2023a). The <em>.csv</em> files follow the structure: <em>gust_observations_x.csv, </em>where <em>x </em>is the identification number for each radar from the <a href="https://www.openradar.io/operational-network">Australian Unified Radar Archive</a>.<br> </li> <li><em>station_details.csv</em><br> This file provides details on the automatic weather stations that measure the wind gusts, with station identifiers (column=Station_id) consistent between <em>station_details.csv </em>and<em> gust_observations_x.csv</em>.<br> </li> <li><em>Table1.pdf</em> <br> Descriptions of convective diagnostics from reanalysis, that are provided in <em>gust_observations_x.csv</em>. This table has been extracted from the supplementary information of Brown et al. (2023a), and references in this table can be found therein.<br> </li> <li><em>radar_details.pdf</em> <br> Taken from Table 1 from Brown et al. (2023a), showing the details of radars used here for storm statistics in <em>gust_observations_x.csv</em>.<br> </li> <li><em>Fig1.jpeg</em><br> Taken from from Brown et al. (2023a), showing a map of the radar domains used here for storm statistics in <em>gust_observations_x.csv</em>.</li> </ul> <p><strong>Wind gust data</strong></p> <p>Measured wind gusts here represent a 3-second average wind speed, at a height of 10 m above ground level. We also provide some derived quantities from the gust data (see table below). Gust data is provided by the <a href="http://www.bom.gov.au/climate/data/stations/">Australian Bureau of Meteorology</a>, from 204 automatic weather stations (<em>station_details.csv)</em>, chosen to be within 100 km of a weather radar with sufficient archived data. These data are originally provided by the Bureau of Meteorology at 1-minute frequency, representing a maximum over a 1-minute interval, but are resampled in this record to hourly frequency, for comparisons with other hourly data below (see Brown et al. (2023a) for details of this resampling). Note that any reuse of this data should properly acknowledge the Australian Bureau of Meteorology.</p> <p><strong>Radar data</strong></p> <p>Radar data is obtained by the <a href="https://www.openradar.io/">Australian Unified Radar Archive</a> (AURA), produced from operational weather radar within the Australian Bureau of Meteorology network. The level1b data used here is available from the AURA dataset on the Australian NCI under a CC4-BY-NC licence from <a href="https://dx.doi.org/10.25914/5f4c85732ee80">https://dx.doi.org/10.25914/5f4c85732ee80</a>. Various properties derived from radar reflectivity and Doppler velocity data is reported here in association with the wind gust observations. These properties are only reported if there is a storm object within 10 km and 10 minutes of the gust location (see Brown et al. (2023a) for storm object definition). Radar properties are described in the table below.</p> <p><strong>Environmental data</strong></p> <p>Various convective diagnostics are associated with wind gust observations, representing the convective environment and large-scale wind profile. These diagnostics are derived from a combination of pressure-level and surface-level ERA5 data (Hersbach et al. 2020), which is provided at hourly intervals on a 0.25-degree latitude-longitude grid, hosted on the Australian NCI (<a href="http://dx.doi.org/10.25914/5fb115b82e2ba">http:// dx.doi.org/10.25914/5fb115b82e2ba</a>). Details on these convective diagnostics are provided in Brown et al. (2023a), and<strong> </strong>in <em>Table1.pdf</em> as provided in this record.</p> <p><strong>Column descriptions</strong></p> <p>The following table provides descriptions of columns of <em>gust_observations_x.csv</em></p> <table> <thead> <tr> <th scope="col">Column name</th> <th scope="col">Description</th> </tr> </thead> <tbody> <tr> <td>dt_utc</td> <td>Time of the measured wind gust, from the automatic weather station data (YYYY-MM-DD HH:MM:SS UTC)</td> </tr> <tr> <td>Station_id</td> <td>Identification number of the weather station that measured the gust. See <em>station_details.csv </em>for details of each station</td> </tr> <tr> <td>Wind_gust_observed</td> <td>The measured wind gust speed (m/s)</td> </tr> <tr> <td>Peak_to_mean_wind_gust_ratio</td> <td>Ratio of the measured wind gust to the 4-hour mean at that station (with the window centred on the gust time)</td> </tr> <tr> <td>SCW</td> <td>Is the measured gust a severe convective wind event?<br> 0: Gust is either less than 25 m/s, does not have a storm object within 10 km, or has a peak-to-mean wind gust ratio less than 2.<br> 1: Gust is greater than 25 m/s, has a storm object within 10 km, and has a peak-to-mean wind gust ratio greater than 2.</td> </tr> <tr> <td>Radar_id</td> <td>Radar identification number (see <em>radar_details.pdf)</em></td> </tr> <tr> <td>Storm_speed</td> <td>Translational speed of the parent storm object (m/s). Only defined if Storm_in10km=1</td> </tr> <tr> <td>Storm_angle</td> <td>Angle of parent storm object movement. In units of degrees from N. Only defined if Storm_in10km=1</td> </tr> <tr> <td>Parent_storm_class</td> <td>The type of parent storm associated with a gust. Only defined if Storm_in10km=1. Possible types are:<br> "Non-linear"<br> "Linear"<br> "Cellular"<br> "Cell cluster"<br> "Supercellular"<br> "Embedded supercell"<br> See Brown et al. (2023a) for classification details</td> </tr> <tr> <td>Storm_in10km</td> <td>Is there a radar-derived storm object within 10 km of the gust, observed no more than 10 minutes prior to the gust?<br> 0: No<br> 1: Yes<br> See Brown et al. (2023a) for a definition of "storm object"</td> </tr> <tr> <td>Major_axis_length</td> <td>The length of the major axis of an ellipse fitted to the parent storm object (km). Only defined if Storm_in10km=1</td> </tr> <tr> <td>Minor_axis_length</td> <td>The length of the minor axis of an ellipse fitted to the parent storm object (km). Only defined if Storm_in10km=1</td> </tr> <tr> <td>Local_reflectivity_maxima</td> <td>Number of local reflectivity maxima within the parent storm object. Only defined if Storm_in10km=1</td> </tr> <tr> <td>Maximum_storm_altitude</td> <td>The maximum height of the parent storm radar reflectivity object (km). Only defined if Storm_in10km=1</td> </tr> <tr> <td>Azimuthal_shear</td> <td>Azimuthal shear of the parent storm object derived from radar data (s<sup>-1 </sup>x 1000). Only defined if Storm_in10km=1. See Brown et al (2023a) for a discussion of azimuthal shear and processing applied to this quantity here.</td> </tr> <tr> <td>ERA5_time</td> <td>Time of the ERA5 environmental data that is associated with the measured gust, corresponding to the closest previous hour (YYYY-MM-DD HH:MM:SS UTC).</td> </tr> <tr> <td>ERA5_latitude</td> <td>Location of closest ERA5 (land) grid point to measured gust, in degrees of latitude</td> </tr> <tr> <td>ERA5_longitude</td> <td>Location of closest ERA5 (land) grid point to measured gust, in degrees of longitude</td> </tr> <tr> <td>Environmental_cluster</td> <td>Event type, based on statistical clustering of environmental data (Brown et al. 2023b)<br> 0: Strong background wind cluster<br> 1: Steep lapse rate cluster<br> 2: High moisture cluster</td> </tr> <tr> <td>Umean06</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Umean01</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>U10</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>WindGust10</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>S06</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>EBWD</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Umeanwindinf</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SRHE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SRH06</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DMI</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>LR_subcloud</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>LR_freezing</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>LR03</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>LR13</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>WMSI</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>BDSD</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>ConvGust_wet</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>ConvGust_dry</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>GUSTEX</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DmgWind</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DmgWind_fixed</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DCAPE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>WMPI</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>WINDEX</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DowndraftTemp</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>ThetaeDiff</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>TEI</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>WNDG</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>DCP</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SCP</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SCP_fixed</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SHERB</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SHERBE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>SWEAT</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>MUCS6</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>MLCS6</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>EffCS6</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>T_Totals</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>K_Index</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Eff_CAPE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Eff_LCL</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>MLCAPE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>ML_LCL</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>MUCAPE</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>MU_LCL</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Qmean01</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> <tr> <td>Qmean06</td> <td>Convective diagnostic derived from ERA5 data. See Table1.pdf</td> </tr> </tbody> </table> <p><strong>References</strong></p> <p>Brown, A., Dowdy, A., Lane, T. P., & Hitchcock, S. (2023b). Types of Severe Convective Wind Events in Eastern Australia. <em>Monthly Weather Review</em>, <em>151</em>(2), 419–448. https://doi.org/10.1175/MWR-D-22-0096.1</p> <p>Brown, A., A. Dowdy, T. P. Lane, & Hitchcock, S. (2023a). Long-term observational characteristics of different severe convective wind types around Australia. <em>Wea. Forecasting</em>, <a href="https://doi.org/10.1175/WAF-D-23-0069.1">https://doi.org/10.1175/WAF-D-23-0069.1</a>, in press.</p> <p>Hersbach, H., Bell, B., Berrisford, P., Hirahara, S., Horányi, A., Muñoz‐Sabater, J., et al. (2020). The ERA5 Global Reanalysis. <em>Quarterly Journal of the Royal Meteorological Society</em>, qj.3803. https://doi.org/10.1002/qj.3803</p>
Aligned bam files for "Phylogenetic modeling of enhancer shifts in mole-rats reveals regulatory changes associated with tissue-specific traits"
<p>Aligned bam files used for analysis in "Phylogenetic modeling of enhancer shifts in mole-rats reveals regulatory changes associated with tissue-specific traits".</p> <p>This is an accompanying dataset to Datasets and code for "Phylogenetic modeling of enhancer shifts in mole-rats reveals regulatory changes associated with tissue-specific traits" (https://zenodo.org/record/7442105).</p>
Supplementary data: Agro-morphological and molecular characterization reveal deep insights in promising genetic diversity and marker-trait associations in Fagopyrum esculentum and F. tataricum
<p>Our study focuses on the global/European buckwheat germplasm collected as part of the ECOBREDD project. The potential of this highly diverse collection for organic buckwheat breeding was evaluated at two complementary levels: phenotypic and genetic. Here, we characterized the phenotypic and genetic diversity of a global collection of the two cultivated buckwheat species <em>Fagopyrum esculentum</em> and <em>F. tataricum</em> (190 and 51 accessions, respectively) using 37 agro-morphological traits and 24 SSR markers (Simple Sequence Repeats) (see publication and info sheet of the data).</p>
Sherbo et al. 2023 Data Package. Data associated with study assessing effects of dissolved organic matter on phytoplankton productivity in boreal lakes. The majority of data was collected in 2018 at the IISD Experimental Lakes Area in Northwestern Ontario
Allochthonous dissolved organic matter (DOM) structures many physical, chemical, and biological properties of lakes, including key variables that control productivity at the base of freshwater food webs. We examined phytoplankton biomass and productivity and their drivers, across eight pristine boreal lakes with DOM ranging from 3.5 to 9.5 mg DOC L-1. Increases in DOM were associated with significant increases in epilimnetic nitrogen, phosphorus and chlorophyll a (Chl a) concentrations suggesting that nutrients associated with DOM stimulate phytoplankton biomass and productivity. Such results were misleading; there was no significant relationship between Chl a and phytoplankton biomass measured via microscopy, and results did not incorporate the effects of DOM on thermocline and euphotic depth. Chl a:biomass and Chl a: carbon ratios indicated that increases in Chl a with DOM were driven by photo-acclimation to declining light availability. Increases. Further, increases in DOM led to large declines in thermocline (~50 %) and euphotic (~75 %) depths, and depth-integrated phytoplankton biomass and primary production (~70 %).
Soil organic carbon and associated uncertainty at 90 m resolution for peninsular Spain
Soil organic carbon (SOC) must be quantified and monitored to assess soil management practices, adapt policies, and evaluate environmental impacts. However, due to SOC spatial variability, soil surveys become a very challenging task because of the high costs of acquiring data, operational complexity, and updating. Digital soil mapping based on machine learning approaches in combination with remote sensing techniques have enabled soil carbon spatial distribution to be significantly improved, even with limited soil samples. A legacy soil database of 8,361 georeferenced profiles and a selection of environmental data-driven covariates intimately related to soil-forming factors (e.g., biota, climate, parent material) were used to generate SOC maps. Modeling of data was based on three supervised learning approaches: quantile regression forest, ensemble machine learning and auto-machine learning. For the final SOC spatial distribution maps, each pixel was assigned the prediction from the most accurate model, i.e., lowest uncertainty. We applied this modeling technique to generate cost-effective, high-resolution maps (90 m pixel resolution) of SOC distribution, and its associated spatially explicit uncertainty, in peninsular Spain. These maps showed 15.7 g.kg-1 mean SOC concentration at 0-30 cm and 3.6 g.kg-1 at 30-100 cm depth. The total SOC stock at its effective depth was 3.8 Pg C, storing the 74% in the upper 30 cm (2.82 Pg C). The correlation between SOC observed and predictions final values showed R2=0.68 for SOCc and R2=0.54 for SOCs at the upper 30cm. The methodology proposed in this study aims to improve benchmark SOC estimates in support of the National GHG Emissions Inventory Report
Interagency Ecological Program: Fish catch and associated water quality for the Fall Midwater Trawl Survey, Sacramento-San Joaquin Delta, 1967-2024
The Interagency Ecological Program’s (IEP) Fall Midwater Trawl Survey (FMWT) is a long-term monitoring survey conducted by the California Department of Fish and Wildlife (CDFW) and has sampled annually since its inception in 1967, with the exceptions of 1974 and 1979, when sampling was not conducted. The FMWT was initiated to determine the relative abundance and distribution of age-0 Striped Bass (Morone saxatilis) in the San Francisco Estuary (California, United States), but the data has also been used for other upper estuary pelagic species, including Delta Smelt (Hypomesus transpacificus), Longfin Smelt (Spirinchus thaleichthys), American Shad (Alosa sapidissima), Splittail (Pogonichthys macrolepidotus), and Threadfin Shad (Dorosoma petenense). The FMWT currently samples 130 stations each month from September to December and a subset of this data is used to calculate an annual abundance index. These 130 stations range from San Pablo Bay upstream to Stockton on the San Joaquin River, and West Sacramento on the Sacramento Deep Water Ship Channel. FMWT sampling data includes 193 unique station locations throughout the San Francisco Estuary; 63 are not currently sampled. Most stations no longer sampled occur in South and Central San Francisco Bay (1968-1979), with others located in San Pablo Bay and upstream into the Delta. There are catch records for stations that were sampled only once. Data users are encouraged to look at station frequency over time to understand when and where sampling occurred. Sampling takes approximately 14 days per month to complete. Historically, FMWT sampling occasionally began as early as July (1972) or August (1968-1973, 1993-1994, 1996-1997) and sometimes continued past December to March (1968-1973, 1978, 1991-2001) or beyond (1992-1995). The Spring Midwater Trawl (SMWT) was a modified survey created to continue sampling January-March to track movements of mature adult delta smelt from 1991-2001. SMWT was replaced in 2002 with the more e
Greenhouse gas fluxes and concentrations and associated habitat data in western Dane County, Wisconsin, USA, streams during the 2018 growing season
Streams are often sources of carbon dioxide (CO2) and methane (CH4), particularly in agricultural regions where sediment and organic matter inputs can be substantial. Floods are occurring more often and more intensely in southern Wisconsin, one such agricultural region, due to climate change and few studies have investigated how floods impact stream CO2 and CH4 fluxes and concentrations. I compared concentrations and fluxes of CO2 and CH4 with greater than 30 variables representing in-stream and watershed attributes at 10 sites in mixed agricultural and suburban locations in southern Wisconsin. Sampling was conducted 10 times at each site during the growing season (May-November) in 2018
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.