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104
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ShareScore release 0.9.0
Dataset results
104 results for “BAM”
BAM file
<p>BAM file</p>
Eluxadoline Bile Acid Malabsorption (BAM) Study
ClinicalTrials.gov study NCT03441581. IPD Sharing: NO. Countries: 1. Publications: 0.
Aldafermin (NGM282) for Chronic Diarrhea Due to Bile Acid Malabsorption (BAM)
ClinicalTrials.gov study NCT05130047. IPD Sharing: NO. Countries: 1. Publications: 0.
A translation control module coordinates germline stem cell differentiation with ribosome biogenesis during Drosophila oogenesis [bam-aramis double mRNAseq]
GEO Series GSE190970. Drosophila melanogaster. 4 samples. Type: Expression profiling by high throughput sequencing.
The bovine alveolar macrophage (bAM) DNA methylome is resilient to infection with Mycobacterium bovis
GEO Series GSE110412. Bos taurus. 16 samples. Type: Methylation profiling by high throughput sequencing.
Small BAM files for practising RNA-seq and WES visualization (human)
<p>Two sets of BAM files for teaching RNA-seq and whole exome sequence (WES) visualization. </p> <p>All data was processed from open access SRA datasets. </p> <table> <tbody> <tr> <td>NAME</td> <td>RNA-EMT</td> <td>WES-LUNG</td> </tr> <tr> <td>SOURCE</td> <td>Yang et al. https://doi.org/10.1128/mcb.00019-16, SRA: PRJNA304419</td> <td>Ju et al. https://doi.org/10.1101/gr.133645.111; SRA: ERP001071)</td> </tr> <tr> <td>DESCRIPTION</td> <td>Human RNA-seq BAM files </td> <td>Human WES BAM files: Lung cancer</td> </tr> <tr> <td>SEQUENCING TYPE</td> <td>Illumina paired-end, stranded</td> <td>Illumina paired-end</td> </tr> <tr> <td>METHODS</td> <td>Original data are from cell lines subjected to epthithelium-mesenchymal transition. We took replicates corresponding to Day 0 (uninduced cells) and Day 7 (7 days after induction). Reads were aligned with STAR. BAM files are restricted to chromosome 18. Gene of interest: CDH2, up in mesenchymal state.</td> <td>WES were obtained from tumor and blood tissues from a non small cell lung cancer patient. Reads were aligned with BWA. A fraction of sequences corresponding to a panel of genes were retained. Genes of interest: DUSP27, KRAS</td> </tr> <tr> <td>MAPPED_TO</td> <td>HG19</td> <td>HG19</td> </tr> <tr> <td>SAMPLING RATE</td> <td>0.50%</td> <td>0.10%</td> </tr> <tr> <td>FILE SIZE</td> <td>2*40Mb</td> <td>2*7Mb</td> </tr> </tbody> </table> <div> </div>
nPSize 13 SEM BAM
<p>nPSize13 SEM BAM</p>
Stress Among Final Year BAMS Students in Relation With Covid Lockdown Through CSSQ-a Cross Sectional Survey
ClinicalTrials.gov study NCT05241080. IPD Sharing: NO. Countries: 1. Publications: 0.
Balance, Aerobic Capacity, Mobility and Strength in Patients Hospitalized for Heart Failure (BAMS-HF) Program
ClinicalTrials.gov study NCT04281849. IPD Sharing: NO. Countries: 1. Publications: 0.
A Study of the Interaction Between BCG And MenC Immunisation: BAM
ClinicalTrials.gov study NCT02002156. IPD Sharing: Not stated. Countries: 1. Publications: 0.
NARSTO EPA Supersite (SS) Fresno, Beta Attenuation Monitors (BAM), Particulate Mass Concentration Data
NARSTO_EPA_SS_FRESNO_BAM_PM_MASS FRACTION is the North American Research Strategy for Tropospheric Ozone (NARSTO) Environmental Protection Agency (EPA) Supersite (SS) Fresno, Beta Attenuation Monitors (BAM), Particulate Mass Concentration Data product. This data set contains measurements taken from two BAMs, PM10, and PM2.5, operated at the Fresno Supersite. The MetOne BAM Monitor measured the attenuation of a beam of beta particles (electrons) generated by a 14ºC source transmitted through an aerosol sample collected on a glass fiber filter tape. Before sample collection, the beta attenuation was measured through a clean part of the tape to obtain a baseline. A sample was collected on the same location on the tape. After sample collection, the beta attenuation was measured through the exposed part of the tape. The net attenuation is proportional to the amount of mass collected on the filter. A mass flow controller controls the flow rate during sample collection at a flow rate of approximately 16.7 l/min. The mass concentration of the collected aerosol was determined from the net attenuation, the sample air flow, the sample time, and the attenuation coefficient for the instrument. The Fresno Supersite is one of several Supersites established in urban areas within the United States by the EPA to better understand the measurement, sources, and health effects of suspended particulate matter (PM). The site is located at 3425 First Street, approximately 1 km north of the downtown commercial district. First Street was a four-lane artery with moderate traffic levels. Commercial establishments, office buildings, churches, and schools were located north and south of the monitor. Medium-density single-family homes and some apartments were located in the blocks to the east and west of First Street. The Fresno Supersite began operation in May of 1999.The EPA PM Supersites Program was an ambient air monitoring research program designed to provide information of value to the atmospheric sciences, and human health and exposure research communities. Eight geographically diverse projects were chosen to specifically address the following EPA research priorities: (1) to characterize PM, its constituents, precursors, co-pollutants, atmospheric transport, and its source categories that affect the PM in any region; (2) to address the research questions and scientific uncertainties about PM source-receptor and exposure-health effects relationships; and (3) to compare and evaluate different methods of characterizing PM including testing new and emerging measurement methods.NARSTO, which has since disbanded, was a public/private partnership, whose membership spanned across government, utilities, industry, and academe throughout Mexico, the United States, and Canada. The primary mission was to coordinate and enhance policy-relevant scientific research and assessment of tropospheric pollution behavior; activities provide input for science-based decision-making and determination of workable, efficient, and effective strategies for local and regional air-pollution management. Data products from local, regional, and international monitoring and research programs are still available.
NARSTO EPA Supersite (SS) Fresno, Beta Attenuation Monitors (BAM) Meteorological Data
NARSTO_EPA_SS_FRESNO_MET_DATA is North American Research Strategy for Tropospheric Ozone (NARSTO) Environmental Protection Agency (EPA) Supersite (SS) Fresno, Beta Attenuation Monitors (BAM) Meteorological Data. This data set contains measurements taken from six meteorological instruments operated at the Fresno supersite from May 24, 2000 to December 31, 2006. The ambient temperature was measured by a Met One Instruments aspirated thermistor, Model 060A-2. The barometric pressure was measured by a Met One pressure transducer, Model 090D. The relative humidity was measured by a Met One aspirated thin film capacitor, Model 083V. The solar radiation was measured by a LI-COR Inc. pyranometer, Model LI-200SA. The wind speed was measured by a Met One Instruments 3-cup anemometer, Model 010-SC. The wind direction was measured by a Met One Instruments High-Sensitivity wind vane, Model 025-5C. All six instruments reported 5 minute samples.The Fresno Supersite is one of several Supersites established in urban areas within the United States by the EPA to better understand the measurement, sources, and health effects of suspended particulate matter (PM). The site is located at 3425 First Street, approximately 1 km north of the downtown commercial district. First Street was a four-lane artery with moderate traffic levels. Commercial establishments, office buildings, churches, and schools were located north and south of the monitor. Medium-density single-family homes and some apartments were located in the blocks to the east and west of First Street. The Fresno Supersite began operation in May of 1999.The EPA PM Supersites Program was an ambient air monitoring research program designed to provide information of value to the atmospheric sciences, and human health and exposure research communities. Eight geographically diverse projects were chosen to specifically address the following EPA research priorities: (1) to characterize PM, its constituents, precursors, co-pollutants, atmospheric transport, and its source categories that affect the PM in any region; (2) to address the research questions and scientific uncertainties about PM source-receptor and exposure-health effects relationships; and (3) to compare and evaluate different methods of characterizing PM including testing new and emerging measurement methods.NARSTO, which has since disbanded, was a public/private partnership, whose membership spanned across government, utilities, industry, and academe throughout Mexico, the United States, and Canada. The primary mission was to coordinate and enhance policy-relevant scientific research and assessment of tropospheric pollution behavior; activities provide input for science-based decision-making and determination of workable, efficient, and effective strategies for local and regional air-pollution management. Data products from local, regional, and international monitoring and research programs are still available.
Expression data from bam and setdb1 mutant ovaries
GEO Series GSE78080. Drosophila melanogaster. 6 samples. Type: Expression profiling by array.
BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples [BaM-seq]
GEO Series GSE206423. Bacillus subtilis; Escherichia coli. 21 samples. Type: Expression profiling by high throughput sequencing.
Comparison of gene expression in control bam-Gal4 and control undriven tbrd-2RNAi Drosophila testes with tbrd-2 knockdown testes
GEO Series GSE81019. Drosophila melanogaster. 9 samples. Type: Expression profiling by array.
ama1 Benchmarking bam file
<p>reference database for sm-SNIPER pipeline</p>
nPSize 12 SEM BAM
<p>nPSize12 SEM BAM</p>
nPSize 03 TSEM BAM
<p>nPSize03 TSEM BAM</p>
BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples [TBaM-seq]
GEO Series GSE206424. Bacillus subtilis. 30 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of bam- vs. Phf7-,bam- mutant testes
GEO Series GSE98966. Drosophila melanogaster. 4 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.