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zenodo36/100

Fig. 4 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 4. (continued).

opencc-by-4.0Aug 2022View details →
zenodo36/100

Fig. 3 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 3. The secondary structure of 22 tRNA in Platygaster robiniae.

opencc-by-4.0Aug 2022View details →
zenodo36/100

Table 2 in The Complete Mitochondrial Genome of Glischropus bucephalus (Vespertilionidae; Chiroptera) Provides New Evidence for Pipistrellus Paraphyly

<p><b>Table 2.</b> GenBank accession numbers for mitochondrion and <i>cytb</i> sequences used in analysis.</p><table><tbody><tr><th>Species</th><th>Mitochondrion</th><th>cytb</th></tr></tbody><tbody><tr><th><i>Glischropus aquilus</i></th><td></td><td>KR612333.1</td></tr><tr><th><i>G. bucephalus</i></th><td>OR667258</td><td>KR612331.1, KR612332.1, OR667259, OR667260, OR667261</td></tr><tr><th><i>G. tylopus</i></th><td></td><td>JX570898.1, EU521632.1, OR667262, OR667263</td></tr><tr><th><i>&ldquo;</i> <i>Pipistrellus coromandra&rdquo;</i></th><td>NC_029191.1</td><td>NC_029191.1</td></tr><tr><th><i>Nyctalus aviator</i></th><td>NC_060309.1</td><td>NC_060309.1, MK167360.1</td></tr><tr><th><i>N. labiata</i></th><td>NC_027237.1, NC_041160.1</td><td>NC_027237.1, NC_041160.1, KX467596.1</td></tr><tr><th><i>N. lasiopterus</i></th><td></td><td>DQ120867.1, EU360680.1, JX570900.1</td></tr><tr><th><i>N. leisleri</i></th><td></td><td>DQ120877.1, JX570901.1, EU360690.1</td></tr><tr><th><i>N. noctula</i></th><td>MN122876.1, MN122907.1</td><td>MN122907.1, MN122876.1, DQ120872.1</td></tr><tr><th><i>Pipistrellus abramus</i></th><td>KX355640.1, NC_005436.1</td><td>GQ332529.1, KX355640.1, NC_005436.1</td></tr><tr><th><i>P. deserti</i></th><td></td><td>KM252759.1</td></tr><tr><th><i>P. coromandra</i></th><td></td><td>OR667264, OR667265, OR667266, OR667267</td></tr><tr><th><i>P. dhofarensis</i></th><td></td><td>KX375145.1, KX375148.1</td></tr><tr><th><i>P. hesperidus</i></th><td></td><td>MN790830.1, MT778037.1, MN790820.1</td></tr><tr><th><i>P. javanicus</i></th><td></td><td>KX496357.1</td></tr><tr><th><i>P. kuhlii</i></th><td>KU058655.1</td><td>KU058655.1, DQ120845.1, EU360657.1</td></tr><tr><th><i>P. maderensis</i></th><td></td><td>KC520771.1, KC520774.1, MT374272.1</td></tr><tr><th><i>P. nanulus</i></th><td></td><td>MK188530.1</td></tr><tr><th><i>P. nathusii</i></th><td>MN122914.1</td><td>MN122914.1, AJ504446.1, DQ120849.1</td></tr><tr><th><i>P. paterculus</i></th><td></td><td>OR667268, OR667269, OR667270</td></tr><tr><th><i>P. pipistrellus</i></th><td>LR862378.1</td><td>KF874520.1, DQ120853.1, LR862378.1</td></tr><tr><th><i>P. pygmaeus</i></th><td>MN122927.1, OX465325.1</td><td>MN122927.1, OX465325.1, EU084882.1</td></tr><tr><th><i>P. raceyi</i></th><td></td><td>KM886094.1, KM886088.1</td></tr><tr><th><i>P. rusticus</i></th><td></td><td>KX375166.1, KX375167.1</td></tr><tr><th><i>P. stenopterus</i></th><td></td><td>MH540194.1</td></tr><tr><th><i>Plecotus auritus</i></th><td>MN122881.1, MT410875.1</td><td></td></tr><tr><th><i>P. macrobullaris</i></th><td>KR134372.1, KR134385.1</td><td></td></tr><tr><th><i>Hypsugo alaschanicus</i></th><td>MF459671.1, MK135784.1, NC_029939.1</td><td></td></tr><tr><th><i>Lasionycteris noctivagans</i></th><td>MT774150.1, MT774151.1, NC_050995.1</td><td></td></tr><tr><th><i>Chalinolobus tuberculatus</i></th><td>NC 002626.1</td><td></td></tr><tr><th><i>Eptesicus bottae</i></th><td>NC_070014.1, OP328299.1, OP328300.1</td><td></td></tr><tr><th><i>E. nilssonii</i></th><td>OX621305.1</td><td></td></tr><tr><th><i>Vespertilio murinus</i></th><td>NC_033347.1</td><td>NC_033347.1</td></tr><tr><th><i>V. sinensis</i></th><td>KJ081440.1, KM092493.1.</td><td>KJ081440.1, KM092493.1.</td></tr><tr><th><i>Myotis brandtii</i></th><td>NC_025308.1</td><td></td></tr><tr><th><i>M. horsfieldii</i></th><td>MF143494.1</td><td></td></tr><tr><th><i>M. muricola</i></th><td>KT213444.1</td><td></td></tr></tbody></table>

opencc-by-4.0Oct 2023View details →
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Table 3 in The Complete Mitochondrial Genome of Glischropus bucephalus (Vespertilionidae; Chiroptera) Provides New Evidence for Pipistrellus Paraphyly

<p><b>Table 3.</b> Gene organization and characterization of the <i>G. bucephalus</i> mitogenome.</p><table><tbody><tr><th></th><th><b>Start Position</b></th><th><b>Stop Position</b></th><th><b>Length (bp)</b></th><th><b>Anticodon</b></th><th><b>Start Codon</b></th><th><b>Stop Codon</b></th><th><b>Strand</b></th></tr></tbody><tbody><tr><th>tRNAPhe</th><td>1</td><td>73</td><td>73</td><td>GAA</td><td></td><td></td><td>+</td></tr><tr><th>12S rRNA</th><td>74</td><td>1010</td><td>937</td><td></td><td></td><td></td><td>+</td></tr><tr><th>tRNAVal</th><td>1011</td><td>1078</td><td>68</td><td>TAC</td><td></td><td></td><td>+</td></tr><tr><th>16S rRNA</th><td>1079</td><td>2644</td><td>1566</td><td></td><td></td><td></td><td>+</td></tr><tr><th>tRNALeu</th><td>2650</td><td>2725</td><td>76</td><td>TAA</td><td></td><td></td><td>+</td></tr><tr><th>Nd1</th><td>2731</td><td>3684</td><td>954</td><td></td><td>ATG</td><td>TA-</td><td>+</td></tr><tr><th>tRNAIle</th><td>3687</td><td>3755</td><td>69</td><td>GAT</td><td></td><td></td><td>+</td></tr><tr><th>tRNAGln</th><td>3753</td><td>3827</td><td>75</td><td>TTG</td><td></td><td></td><td>-</td></tr><tr><th>tRNAMet</th><td>3828</td><td>3896</td><td>69</td><td>CAT</td><td></td><td></td><td>+</td></tr><tr><th>Nd2</th><td>3897</td><td>4937</td><td>1041</td><td></td><td>ATT</td><td>T-</td><td>+</td></tr><tr><th>tRNATrp</th><td>4939</td><td>5005</td><td>67</td><td>TCA</td><td></td><td></td><td>+</td></tr><tr><th>tRNAAla</th><td>5013</td><td>5081</td><td>69</td><td>TGC</td><td></td><td></td><td>-</td></tr><tr><th>tRNAAsn</th><td>5082</td><td>5154</td><td>73</td><td>GTT</td><td></td><td></td><td>-</td></tr><tr><th>OR</th><td>5155</td><td>5189</td><td>35</td><td></td><td></td><td></td><td></td></tr><tr><th>tRNACys</th><td>5187</td><td>5252</td><td>66</td><td>GCA</td><td></td><td></td><td>-</td></tr><tr><th>tRNATyr</th><td>5253</td><td>5319</td><td>67</td><td>GTA</td><td></td><td></td><td>-</td></tr><tr><th>Cox1</th><td>5321</td><td>6862</td><td>1542</td><td></td><td>ATG</td><td>TAA</td><td>+</td></tr><tr><th>tRNASer</th><td>6869</td><td>6937</td><td>69</td><td>TGA</td><td></td><td></td><td>-</td></tr><tr><th>tRNAAsp</th><td>6945</td><td>7011</td><td>67</td><td>GTC</td><td></td><td></td><td>+</td></tr><tr><th>Cox2</th><td>7012</td><td>7692</td><td>681</td><td></td><td>ATG</td><td>TAA</td><td>+</td></tr><tr><th>tRNALys</th><td>7699</td><td>7765</td><td>67</td><td>TTT</td><td></td><td></td><td>+</td></tr><tr><th>ATP8</th><td>7767</td><td>7967</td><td>201</td><td></td><td>ATG</td><td>TAA</td><td>+</td></tr><tr><th>ATP6</th><td>7928</td><td>8605</td><td>678</td><td></td><td>ATG</td><td>TAA</td><td>+</td></tr><tr><th>Cox3</th><td>8608</td><td>9390</td><td>783</td><td></td><td>ATG</td><td>TA-</td><td>+</td></tr><tr><th>tRNAGly</th><td>9392</td><td>9460</td><td>69</td><td>TCC</td><td></td><td></td><td>+</td></tr><tr><th>Nd3</th><td>9461</td><td>9805</td><td>345</td><td></td><td>ATT</td><td>TA-</td><td>+</td></tr><tr><th>tRNAArg</th><td>9809</td><td>9878</td><td>70</td><td>TCG</td><td></td><td></td><td>+</td></tr><tr><th>Nd4L</th><td>9880</td><td>10,173</td><td>294</td><td></td><td>ATG</td><td>TAA</td><td>+</td></tr><tr><th>Nd4</th><td>10,170</td><td>11,546</td><td>1377</td><td></td><td>ATG</td><td>T-</td><td>+</td></tr><tr><th>tRNAHis</th><td>11,548</td><td>11,616</td><td>69</td><td>GTG</td><td></td><td></td><td>+</td></tr><tr><th>tRNASer</th><td>11,617</td><td>11,675</td><td>59</td><td>GCT</td><td></td><td></td><td>+</td></tr><tr><th>tRNALeu</th><td>11,676</td><td>11,745</td><td>70</td><td>TAG</td><td></td><td></td><td>+</td></tr><tr><th>Nd5</th><td>11,764</td><td>13,552</td><td>1789</td><td></td><td>ATA</td><td>TAA</td><td>+</td></tr><tr><th>Nd6</th><td>13,544</td><td>14,062</td><td>519</td><td></td><td>ATG</td><td>TAA</td><td>-</td></tr><tr><th>tRNAGlu</th><td>14,066</td><td>14,133</td><td>68</td><td>TTC</td><td></td><td></td><td>-</td></tr><tr><th>CytB</th><td>14,139</td><td>15,275</td><td>1137</td><td></td><td>ATG</td><td>AGA</td><td>+</td></tr><tr><th>tRNAThr</th><td>15,279</td><td>15,348</td><td>70</td><td>TGT</td><td></td><td></td><td>+</td></tr><tr><th>tRNAPro</th><td>15,348</td><td>15,416</td><td>69</td><td>TGG</td><td></td><td></td><td>-</td></tr><tr><th>D-loop</th><td>15,416</td><td>17,023</td><td>1608</td><td></td><td></td><td></td><td></td></tr></tbody></table>

opencc-by-4.0Oct 2023View details →
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Table 1 in The Complete Mitochondrial Genome of Glischropus bucephalus (Vespertilionidae; Chiroptera) Provides New Evidence for Pipistrellus Paraphyly

<p><b>Table 1.</b> Model types for protein-coding gene analysis configured by IQtree ModelFinder through ultrafast bootstrap (10,000 replicates) for the phylogenetic tree with 3 codons.</p><table><tbody><tr><th>Model Type</th><th></th><th></th><th></th><th></th><th></th><th></th><th>Gene</th><th></th><th></th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th></th><td>ND1</td><td>ND2</td><td>COX1</td><td>COX2</td><td>ATP8</td><td>ATP6</td><td>COX3</td><td>ND3</td><td>ND4L</td><td>ND4</td><td>ND5</td><td>ND6</td><td>CYTB</td></tr><tr><th>GTR+F+G4</th><td>1st pos</td><td></td><td></td><td>1st pos</td><td></td><td>1st pos</td><td></td><td>1st pos</td><td></td><td></td><td></td><td></td><td>1st pos</td></tr><tr><th>TPM3u+F+I+G4</th><td>2nd pos</td><td></td><td>2nd pos</td><td>2nd pos</td><td></td><td>2nd pos</td><td>2nd pos</td><td></td><td></td><td></td><td></td><td></td><td>2rd pos</td></tr><tr><th>TIM+F+I+G4</th><td>3rd pos</td><td>3rd pos</td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td>3rd pos</td></tr><tr><th>TIM2+F+I+G4</th><td></td><td>1st pos</td><td></td><td></td><td>1st pos, 2nd pos</td><td></td><td></td><td></td><td>1st pos</td><td>1st pos</td><td>1st pos</td><td></td><td></td></tr><tr><th>TPM3u+F+I+G4</th><td></td><td>2nd pos</td><td></td><td></td><td></td><td></td><td></td><td>2nd pos</td><td>2nd pos</td><td>2nd pos</td><td>2nd pos</td><td></td><td></td></tr><tr><th>TIM2e+I+G4</th><td></td><td></td><td>1st pos</td><td></td><td></td><td></td><td>1st pos</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th>TIM2+F+I+G4</th><td></td><td></td><td>3rd pos</td><td>3rd pos</td><td>3rd pos</td><td>3rd pos</td><td></td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th>TN+F+I+G4</th><td></td><td></td><td></td><td></td><td></td><td></td><td>3rd pos</td><td>3rd pos</td><td>3rd pos</td><td>3rd pos</td><td>3rd pos</td><td></td><td></td></tr><tr><th>HKY+F+I+G4</th><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td>1st pos, 2nd pos</td><td></td></tr><tr><th>HKY+F+G4</th><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td>3rd pos</td><td></td></tr></tbody></table>

opencc-by-4.0Oct 2023View details →
zenodo36/100

Figure 5 in The complete mitochondrial genome of Lemyra melli (Daniel) (Lepidoptera: Erebidae) and a comparative analysis within the Noctuoidea

Figure 5. The potential stem-loop structure with "GAAT" and "TATA" in the flanking region.

opencc-by-4.0Dec 2016View details →
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Figure 2 in General methods to obtain and analyze the complete mitochondrial genome of aphid species: Eriosoma lanigerum (Hemiptera: Aphididae) as an example

Figure 2. Steps of annotation one complete mt genome of aphid species.

opencc-by-4.0Dec 2016View details →
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Figure 1 in General methods to obtain and analyze the complete mitochondrial genome of aphid species: Eriosoma lanigerum (Hemiptera: Aphididae) as an example

Figure 1. Procedures of sequencing one complete mt genome of aphid species.

opencc-by-4.0Dec 2016View details →
zenodo36/100

Appendix of the thesis "Acquisition of new genetic knowledge on Mycobacterium bovis strains, circulating in France, by the whole genome sequencing approach", part "4. Sequencing of new complete genomes", Ciriac CHARLES

<p>Annex S1: Sequencing metric of the 10 new genomes and obtained with fastqc. A: Metric provide to Illumina metric. B: metric provide to MinION metric.</p> <p>Annex S2: Pan-genomic study performed on 12 <em>M. bovis</em> complete genomes. The table indicates the genes accessory. &ldquo;1&rdquo; shows the presence of CDS and &ldquo;0&rdquo; his absence.</p> <p>Annex S3: Indels between the ten new complete genomes and Mb3601 using progressiveMauve. Annotation of these indels was performed with reference genome comparison for gap or with the annotation (with Prokka) of the new complete genome studied for insertion. IS<em>6110</em> is marked in green. &quot;Indel distribution&quot; sheet shows the indel distribution on the <em>M. bovis</em> genome for the ten new complete genomes. Black arrows show the genomic region with the most of indel found.</p> <p>Annex S4: WgSNP analysis performed on 98 <em>M. bovis</em>. SNPs were annotated and selected according to their specificity to an <em>M. bovis</em> group described in Fig 5. The last common give information on the genetic impact of the SNP. The last sheet presents a graph of SNP number in genomic position.</p> <p>Annex S5: Alignments of the 12 <em>M. bovis </em>complete genomes.</p>

opencc-by-4.0Dec 2022View details →
dryad36/100

<em>Terniopsis chanthaburiensis</em> (Podostemaceae), a new record for China and its complete plastid genome

Open the record for dataset details and reuse information.

publicNov 2025View details →
dryad36/100

Data from: high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery

Open the record for dataset details and reuse information.

publicDec 2023View details →
dryad36/100

The complete chloroplast genome of Mimusops elengi (Sapotaceae)

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publicNov 2021View details →
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A Pleistocene legacy of gene pools, ecodemes and admixtures of Stuckenia pectinata (L.) Börner as evidenced from microsatellites, complete chloroplast genomes and ribosomal RNA cistron (Europe, Africa)

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publicJul 2025View details →
dryad36/100

Selection pressure analysis of dengue virus complete genome and E gene nucleotide sequences from Pakistan

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publicMay 2024View details →
dryad36/100

Complete genome sequence of Picosynechococcus sp. strain NKBG15041c, a fast-growing marine cyanobacterium

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publicJul 2025View details →
zenodo32/100

Nanopore long reads enable the first complete genome assembly of a Malaysian Vibrio parahaemolyticus isolate bearing the pVa plasmid associated with acute hepatopancreatic necrosis disease

<p>Supplemental File 1: Main genome assemblies (Unpolished Flye assembly, Polished Flye assembly, Unicycler Hybrid Assembly and Unicycler Illumina-only assembly) generated in this study for comparison and their BUSCO output.</p> <p>Supplemental File 2: Phyre2 protein modelling output of the putative MVP1 TcdA toxin</p> <p>Supplemental File 3: Phyre2 protein modelling output of the putative MVP1 TcdB toxin</p> <p>Supplemental File 4: Phyre2 protein modelling output of the putative MVP1 TccC toxin</p> <p>Supplemental File 5: InterProScan output of the NCBI-predicted MVP1 proteome.</p> <p>Supplemental Table 1: NCBI BlastN output using the <em>fuc</em> genes of <em>Vibrio parahaemolyticus</em> MVP1 as the query to search against the Vibrio reference WGS database as of 21 Oct 2019</p>

opencc-by-4.0Dec 2019View details →
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FIGURE 7 in The complete mitochondrial genome of Zicrona caerulea (Linnaeus) (Hemiptera: Pentatomidae: Asopinae) and its phylogenetic implications

FIGURE 7. Inferred phylogenetic relationships among Pentatomoidea based on the concatenated nucleotide sequences of 13 mitochondrial protein-coding genes using maximum likelihood (ML) (quadrangles: Phyllocephalinae; circles: Pentatominae; heart: Podopinae; pentagons: Asopinae). Numbers on branches are bootstrap percentages.

opennotspecifiedMar 2020View details →
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The data of complete chloroplast genome sequence of Sorbus amabilis (Rosaceae) in China

<p>This dataset includes the&nbsp;complete chloroplast genome of <em>Sorbus amabilis </em> in China.</p>

opencc-by-4.0Apr 2020View details →
dryad32/100

House mouse Mus musculus dispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences

<div> <p><span><span><span><span><span><span><span><span><span><span><span>The Eurasianhouse mouse <i>Mus musculus</i>is useful for tracing prehistorical human movement related to the spread of farming. We determined whole mitochondrial DNA (mtDNA) sequences (ca. 16,000 bp) of 98 wild-derived individuals of two subspecies, <i>M</i>. <i>m</i>. <i>musculus </i>(MUS) and <i>M</i>. <i>m</i>. <i>castaneus </i>(CAS). We revealed directional dispersals reaching as far asthe Japanese Archipelagofrom their homelands. Our phylogenetic analysis indicated that the eastward movement of MUS was characterised by five step-wise regional extension events: 1) broad spatial expansion into eastern Europe and the western part of western China, 2) dispersal to the eastern part of western China, 3) dispersal tonorthern China, 4) dispersal to the Korean Peninsula and 5) colonisation and expansion in the Japanese Archipelago. These events were estimated to have occurred during the last 2,000–18,000 years. The dispersal of CAS was characterised by three events: initial divergences(ca. 7,000–9,000 years ago) of haplogroups in northern most China and the eastern coast of India, followed by two population expansion events that likely originated from the Yangtze River basinto broad areas of South and Southeast Asia, including Sri Lanka, Bangladesh and Indonesia (ca. 4,000–6,000 years ago) and to Yunnan, southern China and the Japanese Archipelago (ca. 2,000–3,500). This study provides a solid framework for the spatiotemporal movementof the human-associated organisms in Holocene Eastern Eurasia using whole mtDNA sequences, reliable evolutionary rates and accurate branching patterns. The information obtained here contributes to the analysis of a variety of animals and plants associated with prehistoric human migration.</span></span></span></span></span></span></span></span></span></span></span></p> </div>

opencc-zeroAug 2020View details →
dryad32/100

Data from: The first complete mitochondrial genome of the Indian Tent Turtle, Pangshura tentoria (Testudines: Geoemydidae): characterization and comparative analysis

Characterization of complete mitogenome is a widely used genomics study for species delineation and evolutionary research. However, the sequences and structural motifs contained within the mitogenome have been rarely examined to understand the phylogeny and evolutionary history among Testudines. Hence, the mitogenomic features of several Testudines taxa are still anonymous to the scientific communities. The present study decodes the first complete mitochondrial genome of the Indian Tent Turtle, Pangshura tentoria (16,657 bp) by using next-generation sequencing. This denovo assembly encodes 37 genes: 13 protein coding genes (PCGs), 22 transfer RNA (tRNAs), two ribosomal RNA (rRNAs), and one control region (CR). The mitogenome contained 19 intergenic spacer and six overlapping regions. Most of the genes were encoded on majority strand, except for one PCG (NADH dehydrogenase subunit 6) and eight tRNAs. Most of the PCGs were started with an ATG initiation codon, except for cytochrome oxidase subunit 1 with 'GTG' and NADH dehydrogenase subunit 5 with 'ATA'. The termination codons, 'TAA' and 'AGA' were observed in NADH dehydrogenase subunit 4l and NADH dehydrogenase subunit 6 respectively. The Relative Synonymous Codon Usage analysis revealed the maximum abundance of Alanine, Isoleucine, Leucine, and Threonine. The non-synonymous/synonymous ratios were &lt;1 in all PCGs, which indicates strong negative selection among all Geoemydid species. The study also found the typical cloverleaf secondary structure in most of the tRNA genes, except for Serine (trnS1) with lack of the conventional DHU arm. The Wobble base pairing was observed in the different stems (DHU, acceptor, and anticodon) of 11 tRNAs. The comparative study of Geoemydid mitogenomes revealed the occurrence of tandem repeats was frequent in the 3´ end of CR. Further, two copies of a unique tandem repeat 'TTCTCTTT' were identified in P. tentoria. The Bayesian and Maximum Likelihood phylogenetic trees using concatenation of 13 PCGs revealed the close relationships of P. tentoria with Batagur trivittata in the studied dataset. All the Geoemydid species showed distinct clustering with high bootstrap support congruent with previous evolutionary hypotheses. We suggest that the generations of more mitogenomes of Geoemydid species, especially for Batagurinae subfamily, are required to improve our understanding their in-depth phylogenetic and evolutionary relationships.

opencc-zeroSep 2020View details →

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Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record