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833 results for “Consistency”
Data related to a 9000-year tree-ring chronology consisting of subfossil oak material from southern Scandinavia
<p>The data available here is related to studies linking data from subfossil Danish and Swedish oak trees. Since these are ongoing studies, we will gradually make more data available as we publish new studies.</p>
Output pathway data for "Income and inequality pathways consistent with eradicating poverty"
<p>This is a dataset presenting GDP and Gini pathways developed for the publication of our article "Income and inequality pathways consistent with eradicating poverty" (forthcoming at ERL) under the SHAPE project (Sustainable development pathways achieving Human well-being while safeguarding the climate And Planet Earth).</p> <p>More info about the SHAPE project is <a href="https://shape-project.org/">here</a>.</p>
Data for: Temporal consistency and spatial variability in detection: implications for monitoring of macroinvertebrates from shallow groundwater aquifers (Subterranean Biology, 2024)
<p>Original research article: Knüsel M., Alther R., Couton M. & Altermatt F. (2024) Temporal consistency and spatial variability in detection: implications for monitoring of macroinvertebrates from shallow groundwater aquifers. Subterranean Biology 49: 139-161. <a href="https://doi.org/10.3897/subtbiol.49.132515" target="_blank" rel="noopener">https://doi.org/10.3897/subtbiol.49.132515</a></p>
PECD consistent heat demand and COP time series from when2heat
<p>This dataset uses the when2heat package to compute heat demand and COP time series. The data covers the years 1979 to 2019 and the sub-national level down to a resolution grouping Europe into 96 clusters based on ERA5 reanalysis data. Thanks to this temporal scope and spatial resolution, the data is consistent with the Pan-European Climatic Database (PECD) and enables multi-year analysis of multi-sector energy systems that include the heating sector.</p> <p>The "main data" folder provides the time series with COPs for various heat pump technologies and heat demand. The heat demand data deviates from the immediate when2heat outputs in two ways. First, it aggregates the demand for space heating and warm water in commercial and residential buildings into a single time series. The compositionHeatDemand.xlsx in the "background info" folder provides the weights assumed for this aggregation. Since the composition of heat demand changes in the future, the data includes a different time series for every fifth year from 2015 to 2050. Second, we normalize each profile over the historical years from 1979 to 2019 to its maximum value. Accordingly, multiplying the time series with maximum heat demand will give an absolute demand profile.</p> <p>A subfolder in "background_info" provides shape files describing the different spatial resolutions used. The "mappingRegions.csv" specifies which region names in this dataset correspond to region names in the PECD data. The "heating_thresholds.csv" in the "background info" folder provides the assumed heating thresholds to compute the heating demand.</p>
Datasets and code for "To heal or not to heal? Part II: The moment-recurrence time behavior of Oklahoma lithologies is consistent with laboratory healing behavior"
<p>The following files are included:</p> <ul> <li>PulseWidths.csv: Pulse width measurements for each earthquake at each stations</li> <li>family_df_withMoment.csv: Average measurements of pulse width and moment for each earthquake as well as family information and timing (Datetime, recurrence time, time until next event)</li> <li>MTSpec_Prague.ipynb: A jupyter notebook with code for measuring corner frequency from spectral ratios using the joint fit procedure described in the manuscript. Produces the figures shown in the manuscript and supplement. <ul> <li>files needed to run this code are: families_df_1_25_0.95.csv, EQ_catalog_sp.csv, Catalog.txt, Repeater_Sig.csv, the waveforms supplied at Okamoto et al., 2022 (<a href="10.5281/zenodo.6658257">10.5281/zenodo.6658257</a>) <p> </p> </li> </ul> </li> </ul>
Biologging reveals repeatable and consistent physiological parameters in free-living turtles.
<p>Associated R code and data sets for analyses related to the "Do turtles have personalities? A new methodology for assessing personality using biologging data" publication. Between-day and between-turtle repeatability can be found in R files 01 and 02. </p>
Molecular assays of pollen use consistently reflect pollinator visitation patterns in a system of flowering plants
<p>Determining how pollinators visit plants versus how they carry and transfer pollen is an ongoing project in pollination ecology. The current tools for identifying the pollens that bees carry have different strengths and weaknesses when used for ecological inference. In this study we use three methods to better understand a system of congeneric, co-flowering plants in the genus <i>Clarkia </i>and their bee pollinators: observations of plant-pollinator contact in the field, and two different molecular methods to estimate the relative abundance of each <i>Clarkia </i>pollen in samples collected from pollinators. We use these methods to investigate if observations of plant-pollinator contact in the field correspond to the pollen bees carry; if individual bees carry <i>Clarkia </i>pollens in predictable ways, based on previous knowledge of their foraging behaviors; and how the three approaches differ for understanding plant-pollinator interactions. We find that observations of plant-pollinator contact are generally predictive of the pollens that bees carry while foraging, and network topologies using the three different methods are statistically indistinguishable from each other. Results from molecular pollen analysis also show that while bees can carry multiple species of <i>Clarkia </i>at the same time, they often carry one species of pollen. Our work contributes to the growing body of literature aimed at resolving how pollinators use floral resources. We suggest our novel relative amplicon quantification method as another tool in the developing molecular ecology and pollination biology toolbox.</p>
Text-fig. 3. Phylogenetic relationship of Peignecyon felinoides n. gen. et n. sp., within some selected Amphicyonidae, and some extinct caniform carnivorans. Paramiacis exilis is the outgroup. Searches were performed by means of the Branch and Bound and a Bootstrap analysis through 1,000 replicates. One tree is obtained (length 73 steps, consistency index (CI) = 0.6301, retention index (RI) = 0.7000). The numbers below nodes are Bremer indices, and the numbers above nodes are Bootstrap support percentages (only shown ≥ 50). in A New Thaumastocyoninae (Amphicyonidae, Carnivora) From The Early Miocene Of Tuchořice, The Czech Republic
Text-fig. 3. Phylogenetic relationship of Peignecyon felinoides n. gen. et n. sp., within some selected Amphicyonidae, and some extinct caniform carnivorans. Paramiacis exilis is the outgroup. Searches were performed by means of the Branch and Bound and a Bootstrap analysis through 1,000 replicates. One tree is obtained (length 73 steps, consistency index (CI) = 0.6301, retention index (RI) = 0.7000). The numbers below nodes are Bremer indices, and the numbers above nodes are Bootstrap support percentages (only shown ≥ 50).
Text-fig. 10. Phylogenetic relationships of Miocene hyaenodonts (for definitions of character states see Table 2). The data matrix was compiled in MacClade 4.05 and run in PAUP 4.0b10 (Macintosh version). We chose Cimolestes magnus CLEMENS et RUSSELL, 1965, (additional data from Lillegraven 1969), as the outgroup. The unordered and unweighted analysis produced 16 trees. a: Majority-rule consensus. b: Strict consensus. Consistency index (CI): 0.5882; Homoplasy index (HI): 0.4118; Retention index (RI): 0.7742. in New Hyaenodonts (Ferae, Mammalia) From The Early Miocene Of Napak (Uganda), Koru (Kenya) And Grillental (Namibia)
Text-fig. 10. Phylogenetic relationships of Miocene hyaenodonts (for definitions of character states see Table 2). The data matrix was compiled in MacClade 4.05 and run in PAUP 4.0b10 (Macintosh version). We chose Cimolestes magnus CLEMENS et RUSSELL, 1965, (additional data from Lillegraven 1969), as the outgroup. The unordered and unweighted analysis produced 16 trees. a: Majority-rule consensus. b: Strict consensus. Consistency index (CI): 0.5882; Homoplasy index (HI): 0.4118; Retention index (RI): 0.7742.
Setting files from: Simulated patterns of mitochondrial diversity are consistent with partial population turnover in Bronze Age Central Europe
<p><strong>Simulated Data and Simulation Program</strong></p> <p>This dataset release permits to simulate the scenarios investigated in the article entitled "Simulated patterns of mitochondrial diversity are consistent with partial population turnover in Bronze Age Central Europe" by Broccard et al, using the program SPLATCHE3, which is included.</p> <p>There is a zipped folder "Broccard_et_al_SimulationData.zip" that contains i) a "ReadMe.txt" file with the instructions to launch the simulations; ii) the executable called "SPLATCHE3-Linux-64b"; iii) the input settings file for the various scenarios.</p> <p>See Broccard, N, Silva, NM and & Currat M., American Journal of Biological Anthropology (2021), for background and http://www.splatche.com/splatche3 for more information about the simulation program.</p>
Data from: Spatial consistency in drivers of population dynamics of a declining migratory bird
<p>1. Many migratory species are in decline across their geographical ranges. Single-population studies can provide important insights into drivers at a local scale, but effective conservation requires multi-population perspectives. This is challenging because relevant data are often hard to consolidate, and state-of-the-art analytical tools are typically tailored to specific datasets.</p> <p>2. We capitalized on a recent data harmonization initiative (SPI-Birds) and linked it to a generalized modeling framework to identify the demographic and environmental drivers of large-scale population decline in migratory pied flycatchers (<em>Ficedula</em> <em>hypoleuca</em>) breeding across Britain.</p> <p>3. We implemented a generalized integrated population model (IPM) to estimate age-specific vital rates, including their dependency on environmental conditions, and total and breeding population size of pied flycatchers using long-term (34–64 years) monitoring data from seven locations representative of the British breeding range. We then quantified the relative contributions of different vital rates and population structures to changes in short- and long-term population growth rates using transient life table response experiments (LTREs).</p> <p>4. Substantial covariation in population sizes across breeding locations suggested that change was the result of large-scale drivers. This was supported by LTRE analyses, which attributed past changes in short-term population growth rates and long-term population trends primarily to variation in annual survival and dispersal dynamics, which largely act during migration and/or non-breeding season. Contributions of variation in local reproductive parameters were small in comparison, despite sensitivity to local temperature and rainfall within the breeding period.</p> <p>5. We show that both short- and longer-term population changes of British-breeding pied flycatchers are likely linked to factors acting during migration and in non-breeding areas, where future research should be prioritized. We illustrate the potential of multi-population analyses for informing management at (inter)national scales and highlight the importance of data standardization, generalized and accessible analytical tools, and reproducible workflows to achieve them.</p>
Highly consistent brightness temperature fundamental climate data record from SSM/I and SSMIS
<p>The highly consistent brightness temperature (TB) fundamental climate data record (FCDR) comprises intercalibrated TBs from SSM/I on F11 and F13, and SSMIS on board F17. It covers the time period from December 1991 to December 2021. It provides homogenized and intercalibrated TBs in a user-friendly data format (HDF5). SSM/I and SSMIS data are used for various applications, such as analyses of the hydrological cycle. The improved homogenization and inter-calibration procedure ensure the long-term stability of the FCDR for climate related applications. <br> This data files contain daily TBs data on 1°×1° grid-level of satellite F11, F13 and F17 (Level 2A).<br> It is worth noting that the original sensor TB data are provided by Level-1C dataset. The Level-1C data record is complemented with scan status, quality flags, sun glint angles, and earth incidence angles.</p>
Assessing the consistency of fact-checking in political debates
<p>Dataset of the mixed-method study named "Assessing the consistency of fact-checking in political debates"</p>
Leaf gene expression trajectories during the growing season are consistent between sites and years in American beech
<p>Transcriptomics, the quantification of gene expression, provides a versatile tool for ecological monitoring. Here, we show that through genome-guided profiling of transcripts mapping to 33,042 loci, gene expression differences can be discerned among multi-year and seasonal leaf samples collected from American beech trees at two latitudinally separated sites. Despite a bottleneck imposed due to large-scale post-Columbian deforestation, the SNP-based population genetic background analysis has yielded sufficient variation to account for differences between populations and among individuals. Our time series of expression analyses during spring-summer and summer-fall transitions for two consecutive years involved 4197 differentially expressed protein coding genes. A global comparison of 12 seasons has revealed that spring gene expression sets the pace for the rest of the growing season. Using \textit{Populus} orthologs of the differentially expressed genes, we reconstructed a protein-protein interactome as a representation of the leaf physiological states of trees during the seasonal transitions. Gene set enrichment analysis revealed GO terms that highlight molecular functions and biological processes possibly influenced by abiotic forcings such as recovery from drought and response to excess precipitation. Further, based on 324 co-regulated transcripts, we focused on a subset of terms that could be putatively attributed to phenological shifts due to late spring. Our conservative results indicate that extended transcriptome-based monitoring of forests can capture ranges of responses arising from other factors including air quality, chronic disease as well as herbivore outbreaks that require activation and/or downregulation of genes collectively tuning reaction norms needed for the survival of long living trees such as the American beech.</p>
Text-fig. 3. Synchrotron radiation X-ray tomographic microscopy (SRXTM) images of fruits of Canrightia foveolata sp. nov.; Catefica locality, Portugal. a) Volume rendering of fruit showing prominent rim around the middle of the fruit with reduced tepals (arrowheads) and partly abraded fruit wall exposing the pitted endotesta surface of one of two seeds (arrow); note two of the vascular bundles (vb) extending from the base of the fruit to the tepals; b) Voltex of fruit showing prominent rim around the fruit (arrowhead) and dense precipitation of crystals in the endothelium cells of one of the two seeds in the fruit; c) Longitudinal section of fruit (orthoslice yz0520) showing the inferred hypanthium rim (arrow head) and two seeds, one with a dense precipitation of crystals; note the prominent endothelium cells (asterisks) of the inner integument and the well-developed fruit wall above the seeds; d) Transverse section through basal part of fruit and seeds close to the micropyle (orthoslice xy0312) showing partly abraded fruit wall with five vascular bundles (vb) and details of the seed coat with endotesta (oi-end) surrounding the tegmen consisting of an outer epidermis (ii-o), middle layer (ii-m) and a distinct inner epidermis (endothelium) consisting of radially elongated cells (asterisk); e) Transverse section (orthoslice xy1680) through apical part of the fruit close to chalaza showing the tips of two seeds; note the endotesta (oi-end) surrounded by thick-walled cells of the exotesta (oi-o); f) Transverse section (orthoslice xy1485) through fruit in the region of the hypanthium rim showing sections through the two seeds close to the chalazal region; note endotesta (oi-end) surrounded by larger cells of exotesta (oi-o) and fruit wall (fr). Specimen, Catefica 49-S174249 (holotype, a–f). Scale bars = 300 Μm (a–c, e, f), 100 Μm (d). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 3. Synchrotron radiation X-ray tomographic microscopy (SRXTM) images of fruits of Canrightia foveolata sp. nov.; Catefica locality, Portugal. a) Volume rendering of fruit showing prominent rim around the middle of the fruit with reduced tepals (arrowheads) and partly abraded fruit wall exposing the pitted endotesta surface of one of two seeds (arrow); note two of the vascular bundles (vb) extending from the base of the fruit to the tepals; b) Voltex of fruit showing prominent rim around the fruit (arrowhead) and dense precipitation of crystals in the endothelium cells of one of the two seeds in the fruit; c) Longitudinal section of fruit (orthoslice yz0520) showing the inferred hypanthium rim (arrow head) and two seeds, one with a dense precipitation of crystals; note the prominent endothelium cells (asterisks) of the inner integument and the well-developed fruit wall above the seeds; d) Transverse section through basal part of fruit and seeds close to the micropyle (orthoslice xy0312) showing partly abraded fruit wall with five vascular bundles (vb) and details of the seed coat with endotesta (oi-end) surrounding the tegmen consisting of an outer epidermis (ii-o), middle layer (ii-m) and a distinct inner epidermis (endothelium) consisting of radially elongated cells (asterisk); e) Transverse section (orthoslice xy1680) through apical part of the fruit close to chalaza showing the tips of two seeds; note the endotesta (oi-end) surrounded by thick-walled cells of the exotesta (oi-o); f) Transverse section (orthoslice xy1485) through fruit in the region of the hypanthium rim showing sections through the two seeds close to the chalazal region; note endotesta (oi-end) surrounded by larger cells of exotesta (oi-o) and fruit wall (fr). Specimen, Catefica 49-S174249 (holotype, a–f). Scale bars = 300 Μm (a–c, e, f), 100 Μm (d).
Data and scripts for: Quantifying annual spatial consistency in chick-rearing seabirds to inform important site identification
<p>Data derivates and analysis scripts (in R) used for the paper "Quantifying annual spatial consistency in chick-rearing seabirds to inform important site identification", published in Biological Conservation, on analyzing annual spatial overlap of 25 seabird populations across 23 species to assess variability and inform global efforts to improve spatial conservation measures.</p>
Protein length distribution is remarkably consistent across Life
<p>Supplementary Files.</p> <p>Supplementary Files 1 - LengthAnalysis_Data.tar.gz</p> <p>Archive containing the dataset used in this study as well as a curated and annotated Jupyter Notebook used for data analysis, along with temporary pickle files that can be used to skip expensive computation.[March 2023: Updated with additional analyses]</p> <p>Supplementary Files 2 - long_proteins.tar.gz</p> <p>Archive containing the dataset and Jupyter Notebook used for the Gene Ontology enrichment analysis of long proteins in genomes with atypical protein length distributions.</p> <p>Supplementary Files 3 - AllSpecies_Distributions_Figures.tar.gz</p> <p>Archive containing a graphical representation of protein length distribution for each individual proteome in the dataset, as png files.</p>
Mars Watershed boundary data for "Global Spatial Distribution of Hack's Law Exponent on Mars Consistent with Early Arid Climate "
<p>This is the watershed boundary data for Mars (along with Hack's Law exponent) as described in Luo et al. "Global Spatial Distribution of Hack’s Law Exponent on Mars Consistent with Early Arid Climate" accepted for publication in Geophysical Research Letters on 3/10/2023.</p> <p>The attributes are as follows:</p> <p>Id, gridcode = ID of basin</p> <p>Shape_Length = perimeter of the basin</p> <p>Shape_area = area of the basin</p> <p>geoArea = geodesic area of the basin</p> <p>geoLength = geodesic perimeter of the basin</p> <p>areaR = geoArea / Shape_area</p> <p>LengthR = geoLength / Shape_Length</p> <p>n_exponent = Hack’s Law Exponent (h in L = k A^h)</p> <p>n_coefficient = Hack’s Law exponent (k in L = k A^h)</p> <p>n_r2 = r^2 of the nonlinear fit (optimize.curve_fit function in SciPy)</p>
FIG. 7 in Oospore features among morphologically similar and closely related charophyte species: consistency and variability
FIG. 7. — The relationship between oospore parameters of Chara baueri A.Braun and Chara braunii C.C.Gmel., and variable that represents these two species from all sampling localities. Redundancy analysis (RDA). Abbreviations: see Material and methods.
FIG. 5 in Oospore features among morphologically similar and closely related charophyte species: consistency and variability
FIG. 5. — The relationship between oospore parameters of Chara "connivens" P.Salzmann ex A.Braun and Chara globularis Thuil., and nominal variable referring to these two species: A, considering all sampling localities; B, referring to these two species considering Dulin pond locality only. Redundancy analysis (RDA). Abbreviations: see Material and methods.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.