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Fig. 115 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 115. (Above) Map of the approximate distribution of Dactylomys within Amazonia (from Emmons and Feer, 1997); localities for which mtDNA cytochromeb sequence data are available are plotted and identified by number or letter as in the tree, below. Solid circles identify localities belonging to central and eastern Amazonian clade, which we refer to D. dactylinus; open circles represent the two localities of D. boliviensis for which we have sequence data. (Below) Bootstrap consensus parsimonious tree generated from an exhaustive search, based on 798 bp of the cytochromeb gene; length = 376 steps; CI = 0.747; RI = 0.751; rooted by comparison to sequences from the tree rats Makalata and Mesomys. Haplotypes representing the two clades occurring within the Rio Juruá are highlighted. Bold numbers at internal nodes are bootstrap values, based on 1000 iterations; percentages are average Kimura twoparameter distances. Provenance and voucher numbers for individuals examined are given in table 47.
Fig. 96 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 96. Map of localities of members of the Oryzomys megacephalus group sampled for mtDNA cytochromeb sequences: left: O. yunganus (open circles); right: O. perenensis, solid circles; O. megacephalus, solid triangles; O. laticeps, solid squares. Locality numbers correspond to the list of provenance and voucher specimen catalog numbers provided in table 34. Distributions are based on Musser et al. (1998).
Fig. 92 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 92. Dorsal (left) and ventral (right) views of the skull of Oligoryzomys microtis (JLP 15913 Jainu [locality 11], right bank Rio Jurua´, Amazonas, Brazil). Magnification = Χ2.
Fig. 99 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 99. Strict consensus of two equal minimumlength parsimony trees for haplotypes of the mitochondrial cytochromeb gene (801 bp) for members of the Oryzomys macconnelli complex of species Length = 550 steps, CI = 0.567, RI = 0.811. Sequences of members of the Oryzomys megacephalus species complex are used as the outgroup. Bold numbers at internal nodes are bootstrap values, based on 1000 replicates; percentages are mean Kimura twoparameter distances for all haplotypes below a given node. Haplotypes are identified by locality, as in the map, fig. 98, and provenance and voucher catalogue numbers are listed in table 36.
Fig. 83. Ratio diagram comparing the mean log10 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 83. Ratio diagram comparing the mean log10 values for each external and cranial dimension among five species of Oecomys from the Rio Jurua´. Levels of significance in comparisons of the raw variables between pairs of taxa are indicated (* = p <0.05; ** = p <0.01; *** = p <0.001).
Fig. 125 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 125. Bootstrap consensus minimumlength parsimony tree for haplotypes of the mitochondrial cytochromeb gene (798 bp) for spiny tree rats, genus Mesomys. Length = 644 steps, CI = 0.554, RI = 0.733. Sequences of Proechimys and Isothrix were used as outgroups to root the tree. Bold numbers at internal nodes are bootstrap values, based on 1000 replicates; percentages are average Kimura twoparameter distances. Haplotypes are identified by locality, as in the map, fig. 124, and provenance and voucher catalog numbers are listed in table 55.
Fig. 88 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 88. Karyotypes of two female Oecomys species (2n = 86, FN = 98) representing each of the two major mitochondrial DNA clades identified in fig. 86: A: JUR 354, VaiQuemQuer (locality 15) right bank Rio Jurua´, Estado do Amazonas, Brazil; B: JUR 480, Colocação ViraVolta (locality 14) left bank Rio Jurua´, Estado do Amazonas, Brazil.
Fig. 81 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 81. Map of the occurrence of five species of arboreal rice rats, Oecomys, at each of the 16 principal localities sampled along the Rio Jurua´.
Fig. 82 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 82. Bootstrap consensus tree illustrating differentiation in an 801 bp fragment of the mtDNA cytochromeb gene among species of Oecomys from the Rio Jurua´. Bold numbers at internal nodes are bootstrap values, based on 1000 iterations; percentages are Kimura twoparameter distances. Field catalog numbers of specimens included in the analysis are indicated, as is the locality by number (see fig. 1). Branch lengths are drawn proportional to the number of character changes. The tree is rooted by sequence comparisons to species of Oryzomys. Tree length = 396 steps; CI = 0.642; RI = 0.593.
Fig. 112 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 112. Chromosome complements of: A, R. leucodactylus (JLP 15683, male, locality 6) and B, R. gardneri (MNFS 1409, female, locality 2).
Fig. 84 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 84. Bivariate plots of discriminant scores for the first two axes in comparisons between (above) five species of Oecomys from the Rio Juruá and the three larger species (bottom), based on log10 cranial variables. The percent of the total variation explained by each axis is indicated in each plot.
Fig. 113 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 113. Dorsal (top) and ventral (bottom) views of the cranium of Amazonian Bamboo rats Dactylomys. Left: D. boliviensis (MNFS 1005, locality a). Right: D. dactylinus (JUR 485, locality 14) Natural size.
Fig. 104 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 104. Pie diagrams of the proportion of reproductive states for toothwear age classes of male (above) and female (below) Oryzomys perenensis pooled across all localities from the Rio Jurua´. See text for explanation of character states for both sexes.
Fig. 120 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 120. Strict consensus of three minimumlength parsimony trees for haplotypes of the mitochondrial cytochromeb gene (798 bp) for the genus Isothrix. Length = 512 steps, CI = 0.684, RI = 0.803. Sequences of Proechimys and Mesomys were used as outgroups to root the tree. Bold numbers at internal nodes are bootstrap values, based on 1000 replicates; percentages are mean Kimura twoparameter distances. Haplotypes are identified by locality, as in the map, fig. 117, and provenance and voucher catalogue numbers are listed in table 49.
Fig. 105 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 105. Unrooted network of 11 haplotypes of a 414 bp fragment of the mtDNA cytochromeb gene obtained from 25 individuals of Oryzomys yunganus. The number of mutational steps between adjacent haplotypes is indicated by the bars. Numbers indicate the localities from which each haplotype was recovered (from the map, fig. 1). The dashed line separates haplotypes from the Headwaters and Upper Central regions (to the left) from those of the Lower Central and Mouth regions.
Fig. 109 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 109. Development of the tail tuft in young individuals (age class 3) of: A, R. gardneri (MNFS 1409, locality 2) and B, R. leucodactylus (JLP 15724, locality 6), both from the Rio Jurua´; and in adult individuals (age class 4) of C, R. gardneri from Cuzco Amazónico, Rio Madre de Dios, Madre de Dios Perú (MVZ 168960) and D, R. leucodactylus from the Rio Juruá (JLP 15426, locality 7).
Fig. 108 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 108. The single mostparsimonious tree based on an exhaustive search, for haplotypes of the mitochondrial cytochromeb gene (500 bp) for specimens of climbing rats, Rhipidomys, from southwestern Amazonia. Length = 183 steps, CI = 0.885, RI = 0.741. The sequence for MVZ 168938 (Cusco Amazónico, Madre de Dios, Perú is from Smith and Patton (1993). Tree is rooted by comparison to sequences of Thomasomys aureus (also from Smith and Patton, 1993). Bold numbers at internal nodes are bootstrap values based on 1000 replicates; percentages are average Kimura twoparameter distances. Haplotypes are identified by field number and locality.
Fig. 121 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 121. Bivariate plots of three discrimant function axes based on logtransformed cranial variables for four geographic samples of Isothrix bistriata: the upriver Rio Juruá mtDNA clade (solid circles) the downriver Rio Juruá mtDNA clade (solid squares), pooled samples from northern and eastern Perú (stippled diamonds), and pooled samples from southern Venezuela (solid triangles). Provenance data for the latter two samples can be found in Patton and Emmons (1985).
Fig. 119 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 119. Occlusal surface of the right maxillary toothrows of five genera of rodents of the family Echimyidae: A, Isothrix bistriata (MNFS 471, locality 7); B, Makalata macrura (JLP 15394, locality 8); C, Proechimys steerei (JLP 15245, locality 7); and D, Mesomys hispidus (JUR 502, locality 14).
Fig. 79 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia
Fig. 79. Histograms of means, with standard errors, of the length to width ratio of the interparietal for samples allocated by Hershkovitz (1944) to five named forms of water rats, Nectomys, from Amazonia, as well as from three 2n = 38–42 geographic samples (Río Cenepa, Amazonas, Peru´; Balta, Río Curanja, Ucayali, Peru´; and Rio Jurua´, Amazonas, Brazil). The presumptive association of each named form to diploid number class is indicated.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.