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206
datasets available to search
ShareScore release 0.9.0
Dataset results
206 results for “FFPE”
snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium]
GEO Series GSE268427. Homo sapiens. 3 samples. Type: Other.
llumina 450k array was used to identify DNA methylation data from formalin-fixed paraffine-embedded (FFPE) human uveal melanoma correlated to gene expression, metastasis and poor prognosis
GEO Series GSE156876. Homo sapiens. 23 samples. Type: Methylation profiling by array.
Multiple Myeloma Extramedulary Disease Samples FFPE
ClinicalTrials.gov study NCT07354555. IPD Sharing: NO. Countries: 1. Publications: 0.
Retrospective Study in FFPE Samples From Younger Patients With Rhabdomyosarcoma
ClinicalTrials.gov study NCT06040229. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Comparison of qPCR to IHC and FISH for Detection of ALK Fusion Mutations in FFPE Tissue From NSCLC Patients
ClinicalTrials.gov study NCT02010047. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples
GEO Series GSE61844. Mus musculus; Homo sapiens. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
PAT-ChIP-Seq: a novel tool for the epigenetic profiling of formaldehyde-fixed and paraffin-embedded (FFPE) pathology samples
GEO Series GSE21449. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics
GEO Series GSE244325. Homo sapiens. 89 samples. Type: Expression profiling by high throughput sequencing.
FFPE study using MIP copy number platform
GEO Series GSE14856. Homo sapiens. 226 samples. Type: Genome variation profiling by SNP array.
FFPE-ATAC decodes the chromatin accessibility from the clinical archived FFPE tissues
GEO Series GSE163306. Mus musculus; Homo sapiens. 68 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Expression profiling of formalin-fixed, paraffin-embedded (FFPE) breast cancer metastases of the lymph node and autopsy tissues [DASL HumanRef-v3 samples]
GEO Series GSE32489. Homo sapiens. 120 samples. Type: Expression profiling by array.
Primary constitutional MLH1 epimutations: a focal epigenetic event [FFPE data sets]
GEO Series GSE107352. Homo sapiens. 51 samples. Type: Methylation profiling by genome tiling array.
Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [RNA-Seq FFPE]
GEO Series GSE289743. Homo sapiens. 83 samples. Type: Expression profiling by high throughput sequencing.
Investigating stromal reprogramming in canine mammary adenoma using next-generation RNA sequencing of FFPE subsections
GEO Series GSE135454. Canis lupus familiaris. 26 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq from archival FFPE Breast Cancer samples: Molecular Pathway Fidelity and Novel Discovery
GEO Series GSE130397. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
Global gene expression analysis in paired fresh-frozen and FFPE furan-exposed mouse liver samples
GEO Series GSE62843. Mus musculus. 122 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
Gene-expression profiles of archived section of formalin-fixed paraffin-embedded (AS-FFPE) liver and tumor tissues from hepatocellular carcinoma patients
GEO Series GSE46444. Homo sapiens. 136 samples. Type: Expression profiling by array.
A cross-comparison of technologies for the detection of microRNAs from FFPE samples of hepatoblastoma patients [microarray]
GEO Series GSE62011. synthetic construct; Homo sapiens. 6 samples. Type: Non-coding RNA profiling by array.
Whole-Genome Gene Expression Profiling of FFPE Tissue Samples with WG-DASL and IVT-based assays
GEO Series GSE17575. Homo sapiens. 8 samples. Type: Expression profiling by array.
A gene expression profiling study to identify distinct molecular markers in formalin-fixed, paraffin-embedded samples of Pseudomyxoma Peritonei [FFPE]
GEO Series GSE228375. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.