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3,415 results for “Gut”
Illumina Sequencing Data for "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes"
<p>Illumina Sequencing Data for Sulaiman et al., "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes".</p>
Fig. 6 in Trichoplusia ni (Lepidoptera: Noctuidae) survival, immune response, and gut bacteria changes afer exposure to Azadirachta indica (Sapindales: Meliaceae) volatiles
Fig. 6. Transcription of the 23S gene of Enterobacteria (428 bp) and ribosomal protein S5 gene (782 bp) from rRNA samples of Trichoplusia ni NL strain larval midguts, afer exposure to 10 g of neem leaves, determined by reverse transcriptase polymerase chain reaction (RT-PCR). PCR product of RNA not subject- ed to RT-PCR was taken as a negative control. Lane 1, DNA ladder 100 bp; lane 2, PCR product of plasmid DNA with the Enterobacteria insert as positive control; lane 3, PCR products of the 23S gene of Enterobacteria and the ribosomal protein S5 gene of T. ni from unexposed larvae; lanes 4, 6, and 8, PCR of control RNA; lane 5, RT-PCR products in gut from VOC-exposed T. ni larva, showing both 23S and ribosomal protein S5 gene amplification (1st replication); lane 7, RT-PCR products in gut from VOC-exposed T. ni larva, showing both 23S and ribosomal protein S5 gene amplification (2nd replication).
Fig. 3 in Trichoplusia ni (Lepidoptera: Noctuidae) survival, immune response, and gut bacteria changes afer exposure to Azadirachta indica (Sapindales: Meliaceae) volatiles
Fig. 3. Mortality for NL and Gto strains of Trichoplusia ni exposed as neonate larvae for 7 d in sealed containers to VOCs from 1 or 10 g of dried neem stems compared with the unexposed controls. Data represent the mean ± standard deviation of 3 replicate experiments per treatment (90 larvae per replicate were tested).
Fig. 1 in Trichoplusia ni (Lepidoptera: Noctuidae) survival, immune response, and gut bacteria changes afer exposure to Azadirachta indica (Sapindales: Meliaceae) volatiles
Fig. 1. Setup of the bioassay container for neem VOC exposure of Trichoplusia ni neonates. A) View of tray with 30 cups placed inside the 11 L plastic container with airtight lid for VOC exposure; B) view of tray with 30 cups with artificial diet infested with 3 neonates each and cardboard lid to allow VOC exchange; C) view of 1 L container with artificial diet (bottom) and 1 oz (29.6 mL) cups (top) with 1 g milled dried neem stems or leaves.
◂Fig. 5 Gametogenesis in male and female Veneriserva pygoclava. A–D Semi-thin histological sections of female Veneriserva pygoclava, stained with toluidine blue. A Cross-section of a female Veneriserva. B Close-up of large mature oocytes without discernible nurse cells. C Developing oocytes attached to mesenteries (mes), and oogonia proliferating from the ventral side of the dorsal blood vessel (bv). D Details of vitellogenic oocytes and nurse cells. Arrowheads indicate brownstained yolk platelets and yolk bodies. E Live sperm cells captured in a light micrograph. F–G Cross-sections of male Veneriserva. Note the absence of a gut in the cross-sections. Abbreviations—ac acicula, acr acrosome, bv blood vessel, coe coelomic cavity, mes mesentery, nc nurse cell, nn nurse cell nucleus, nu sperm cell nucleus, Oo oocyte, on oocyte nucleus, sp spermatogonia, vnc ventral nerve cord in Hardly Venus's servant-morphological adaptations of Veneriserva to an endoparasitic lifestyle and its phylogenetic position within Dorvilleidae (Annelida)
◂Fig. 5 Gametogenesis in male and female Veneriserva pygoclava. A–D Semi-thin histological sections of female Veneriserva pygoclava, stained with toluidine blue. A Cross-section of a female Veneriserva. B Close-up of large mature oocytes without discernible nurse cells. C Developing oocytes attached to mesenteries (mes), and oogonia proliferating from the ventral side of the dorsal blood vessel (bv). D Details of vitellogenic oocytes and nurse cells. Arrowheads indicate brownstained yolk platelets and yolk bodies. E Live sperm cells captured in a light micrograph. F–G Cross-sections of male Veneriserva. Note the absence of a gut in the cross-sections. Abbreviations—ac acicula, acr acrosome, bv blood vessel, coe coelomic cavity, mes mesentery, nc nurse cell, nn nurse cell nucleus, nu sperm cell nucleus, Oo oocyte, on oocyte nucleus, sp spermatogonia, vnc ventral nerve cord
Results of a Galaxy metagenomic analysis of bee gut microbiome data from PRJNA977416
<p>This dataset contains the outputs of a metagenomic Galaxy workflow run on the raw data of the project PRJNA977416, including the CSV file of associated metadata and the workflow.ga used for the analysis.</p> <p>Firstly, it has information on taxonomic assignment with :</p> <ul> <li>the reports of all samples for Kraken2, Bracken, and MetaPhlan taxonomic profilers. </li> <li>two tabular files obtained with Taxpasta, which merge samples and standardize taxonomic abundances.</li> <li>for the Bracken standardised abundance, a file with the measures of alpha diversity calculated </li> <li>two HTML files giving access to the Krona diagram for this taxonomic composition.</li> </ul> <p>Secondly, it contains functional informations with :</p> <ul> <li>a tabular file with the relative abundance of all GO terms for all samples</li> <li>a directory detailing pathways and genes families detected.</li> </ul>
Dog gut gene catalog. Supplemental data for "Similarity of the dog and human gut microbiomes in gene content and response to diet"
<p>Gene catalogue for the dog gut microbiome including</p> <ol> <li>FASTA file of nucleotide sequences (including padding, see coords file for exact coordinates)</li> <li>FASTA file of amino-acid sequences</li> <li>coords file (gene coordinates)</li> <li>Taxonomic predictions</li> <li>Functional predictions</li> </ol> <p>See the paper "<em>Similarity of the dog and human gut microbiomes in gene content and response to diet</em>" by Coelho et al. in Microbiome for details. We ask that you cite that publication when using this dataset in published literature</p>
eggNOG Mapper annotations of Mouse, Dog and Pig gut gene catalogs
<p><a href="https://github.com/jhcepas/eggnog-mapper">eggNOG-mapper</a> annotations of <a href="https://doi.org/10.1038/nbt.3353">mouse</a>, <a href="https://doi.org/10.1186/s40168-018-0450-3">dog</a> and <a href="https://doi.org/10.1038/nmicrobiol.2016.161">pig</a> gut, and <a href="https://doi.org/10.1038/nbt.2942">IGC</a> gene catalogs.</p>
bin3C - Cluster report and CheckM result for bin3C solution of the real human gut microbiome
<p>Supplementary data table S3 from the manuscript</p> <p>bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)</p> <p>A real human gut microbiome was deconvoluted using bin3C. Subsequently, bin3C produced a report detailing per-cluster statistics for the entire solution. The largest 296 clusters were then analyzed with CheckM and joined to the report.</p>
A Comprehensive Assessment of Demographic, Environmental and Host Genetic Associations with Gut Microbiome Diversity in Healthy Individuals (16S rRNA gene sequencing data)
<p>Microbiome data accompanying manuscript "A Comprehensive Assessment of Demographic, Environmental and Host Genetic Associations with Gut Microbiome Diversity in Healthy Individuals". Data is available for alpha- and beta- diversity, as well as for individual taxa both in binary and quantitative phenotypic representation. Data is available for 827 individuals that gave consent for their data to be shared outside of the Milieu intérieur consortium. </p>
A Comprehensive Assessment of Demographic, Environmental and Host Genetic Associations with Gut Microbiome Diversity in Healthy Individuals (Metadata)
<p>Associated demographic, lifestyle, environmental and biochemical metadata accompanying manuscript "A Comprehensive Assessment of Demographic, Environmental and Host Genetic Associations with Gut Microbiome Diversity in Healthy Individuals". Data is available for 827 individuals that gave consent for their data to be shared outside of the Milieu intérieur consortium. </p>
Data and code: Gut microbiota structure differs between honey bees in winter and summer
<p>This dataset contains data and code underlying the qPCR, amplicon sequencing, and statistical analysis of the research article "Gut microbiota structure differs between honey bees in winter and summer”. Short read datasets are available under NCBI Bioproject accession PRJNA578869.</p>
Fig. 10 in Gut anatomy of the worker caste of Neotropical genera Cylindrotermes Holmgren and Hoplotermes Light (Infraorder Isoptera, Termitidae)
Fig. 10. Hoplotermes amplus worker gut in situ: (a) detail of stomodeal valve insertion, (b) dorsal, (c) right, (d) ventral and (e) left views; (f) detail of enteric-valve insertion in dorsal view (P4 and P5 removed, arrow: enteric-valve insertion). Gray area indicates mesenteric tissue; c: crop; M: mesenteron; MT: mesenteric tongue, i: isthmus, P1: first proctodeal segment (ileum); P3: third proctodeal segment (paunch); P4: fourth proctodeal segment (colon); P5: fifth proctodeal segment (rectum).
Fig. 7 in Gut anatomy of the worker caste of Neotropical genera Cylindrotermes Holmgren and Hoplotermes Light (Infraorder Isoptera, Termitidae)
Fig. 7. Cylindrotermes sapiranga: (a) detail of gizzard armature (small arrow: crop pectinate scales), (b) enteric valve, with one of the cushions outlined (large arrow: proximal pad, small arrow: distal portion).
Fig. 9 in Gut anatomy of the worker caste of Neotropical genera Cylindrotermes Holmgren and Hoplotermes Light (Infraorder Isoptera, Termitidae)
Fig. 9. Hoplotermes amplus worker: (a) detail of gizzard armature (small arrow: crop pectinate scales), (b) enteric valve (large arrows: cushions).
Fig. 2 in Gut anatomy of the worker caste of Neotropical genera Cylindrotermes Holmgren and Hoplotermes Light (Infraorder Isoptera, Termitidae)
Fig. 2. Cylindrotermes caata: (a) detail of gizzard armature (small arrow: crop pectinate scales), (b) enteric valve, with one of the cushions outlined (large arrow: proximal pad, small arrow: distal portion).
Figure 2 in Dispersion of nematodes (Rhabditida) in the guts of slugs and snails
Figure 2. Percentage of 38 gastropods of 7 species that excreted viable nematodes in their faeces over five days after infection, declining from 64 % in the beginning to 3 % on day five and then to zero.
Figure 3 in Dispersion of nematodes (Rhabditida) in the guts of slugs and snails
Figure 3. Egestion of different rhabditids by five gastropod species in the days after experimental infection.
Figure 1 in Tissue pH and gut ecomorphology in six freshwater teleosts occupying different trophic levels
Figure 1. The line of best fit showing the relationship between blood pH and muscle pH of the 6 freshwater fish species.
Figure 2. The relationship between relative gut length and trophic position for the 6 in Tissue pH and gut ecomorphology in six freshwater teleosts occupying different trophic levels
Figure 2. The relationship between relative gut length and trophic position for the 6 freshwater fish species. (a) Relative gut length is presented in percent of body length; (b) Relative gut length is presented in percent of total length. Averaged values of trophic position (TP) from the study by Zhang et al. (2013). Grey and black circle dots correspond to TP for stable isotope analysis (SIA) and for gut content analysis (GCA), respectively. Dashed line represents the linear fitting of relative gut length and TP for SIA, while solid line represents the linear fitting of relative gut length and TP for GCA.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.