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193 results for “Joining”
FIGURE 1. Neighbour-joining COI gene tree using uncorrected p in Description of the final stadium larvae of Onychargia atrocyana Selys, 1865 from Sarawak, identified using DNA barcoding (Odonata: Zygoptera: Platycnemididae), with an overview of larval characters in the Platycnemididae
FIGURE 1. Neighbour-joining COI gene tree using uncorrected p-distance for Onychargia atrocyana using Paracnemis alluaudi and Podolestes harrissoni as outgroups. All voucher specimens have a six-digit collection number with an RMNH.INS. prefix; this prefix is omitted in the figure for clarity.
FIGURE 3. Neighbour-joining tree showing p in DNA barcoding and male genital morphology reveal five new cryptic species in the West Palearctic bee Seladonia smaragdula (Vachal, 1895) (Hymenoptera: Apoidea: Halictidae)
FIGURE 3. Neighbour-joining tree showing p-distances at COI (658bp) among Seladonia specimens. Outgroup: Lasioglossum semilucens. Label at the end of each branch includes field ID or GenBank accession number, species identification [L = Lasioglossum, H = Halictus, S = Seladonia, S s = Seladonia smaragdula sensu lato, V = Vestitohalictus, *A–E = each of the currently recognized forms within Seladonia smaragdula based on the male genitalia according to Pauly & Rassel (1982)] and country of collection. Values at nodes: bootstrap support (%) in the neighbour-joining / parsimony / maximum likelihood analyses / and posterior probabilities in the Bayesian inference ("+": maximum support; "-" support of bootstrapping <80% or posterior probability <0.9). Colors of branches are according to each S. smaragdula form; black triangles at the end of a branch represent several similar haplotypes with identical species identifications.
FIGURE 14. Unrooted Neighbour-joining phylogram the 28S in A new species of Cymodoce Leach, 1814 (Crustacea: Isopoda: Sphaeromatidae) based on morphological and molecular data, with a key to the Northern Indian Ocean species
FIGURE 14. Unrooted Neighbour-joining phylogram the 28S rDNA: D8 expansion fragment of Cymodoce delavrii, C. tribullis and C. waegelei based on p-distances.
FIGURE 36. Neighbour joining tree generated using K2P in A new species of spider belonging to the Pardosa lugubris - group (Araneae: Lycosidae) from Far East Asia
FIGURE 36. Neighbour joining tree generated using K2P distances of COI for ten species of the genus Pardosa belonging to five species groups [1—agrestis, palustris; 2—amentata; 3—paludicola; 4—caucasica, koponeni, lugubris, alacris; 5— hortensis, proxima]. The sequences are sometimes collapsed into triangles, with the horizontal dimension indicating the genetic divergence within that species. Bootstrap support values are shown above the branches.
FIGURE 1. Optimal tree inferred using the Neighbor-Joining method inferred from 550 in Paracoccus leucadendri Mazzeo & Franco in Mazzeo, Franco & Russo, 2009, a junior synonym of Paracoccus hakeae (Williams, 1985) comb. nov. (Coccomorpha: Pseudococcidae)
FIGURE 1. Optimal tree inferred using the Neighbor-Joining method inferred from 550 replicates. Shown next to the branches is the percentage of replicate trees in which the associated taxa clustered together in the bootstrap test. The tree is drawn to scale, with branch lengths in the same units as those of the genetic distances used to infer the tree. Genetic distances were computed using the p-distance method and are in the units of the number of base differences per site.
FIGURE 5. Neighbour-joining tree obtained using K2P in New species and phylogenetic relationships of the spider genus Coptoprepes using morphological and sequence data (Araneae: Anyphaenidae)
FIGURE 5. Neighbour-joining tree obtained using K2P distances, downloaded from BOLD, showing the relationships for Coptoprepes Simon. Data presented as: Species name | Collection number | Sex | Country. Region or province | BIN number. Each color represents a different Barcode Index Number (BIN).
FIGURE 3. Median-joining network showing relationships among PTN12 in Revision of the water-holding frogs, Cyclorana platycephala (Anura: Hylidae), from arid Australia, including a description of a new species
FIGURE 3. Median-joining network showing relationships among PTN12 haplotypes of C. occidentalis (blue), C. platycephala eastern (black), C. platycephala northern (red) and C. verrucosa (orange). Haplotypes are designated numerically followed by the number of individuals observed with that haplotype in italics. Numbers along branches indicate the number of inferred mutations.
FIGURE 8. Neighbor joining Kimura 2 in A new species of Manoa Fittkau (Diptera: Chironomidae), with DNA barcodes from Xianju National Park, Oriental China
FIGURE 8. Neighbor joining Kimura 2 parameter tree based on available Pseudochironomini DNA barcodes.
Figure 1. Neighbour joining COI gene tree using uncorrected p in Description of larvae of two species of Coeliccia Selys, 1865 from Sarawak, identified using DNA barcoding (Odonata: Platycnemididae)
Figure 1. Neighbour joining COI gene tree using uncorrected p-distance for species of the Coeliccia borneensis-group, including both adults and larvae of C. campioni and C.flavostriata, and their sampling sites (except for Lestes dissimulans all from Sarawak, East Malaysia). Coeliccia didyma and Lestes dissimulans are used as outgroups.
FIGURE 4. Neighbor joining Kimura 2 in Two new and one newly recorded species of Polypedilum Kieffer 1912 with DNA barcodes from Oriental China (Chironomidae: Diptera)
FIGURE 4. Neighbor joining Kimura 2 parameter sub-tree generated from BOLD, scale represents K2P genetic distance.
FIGURE 22. Neighbor-joining analysis for cytochrome c oxidase I in Review of the Palearctic Atemelia Herrich-Schäffer (Lepidoptera, Yponomeutoidea, Praydidae), with description of a new leafmining species
FIGURE 22. Neighbor-joining analysis for cytochrome c oxidase I (COI) of Palaearctic Atemelia, derived from seven samples among two species based upon Kimura 2-parameter model.
Joined up thinking: linking and sharing Science Museum collections and content
<p>The Science Museum has much content online featuring its collections, objects and contextual stories, but this is fragmented across many websites and fails to add up to a credible and coherent online destination. It is known from our analytics that rich engagement with our online content takes place across the internet; on blogs, on twitter etc, but this engagement isn't reflected on our own web presence.</p><p>Our user-centred design process told us that users had relatively little interest in the data itself - their goal was content - but that the richness of the linkages our data could drive greatly increased the content's value. We set up a project to create aggregated content on our core website, interlinking it from various domains - archives and images, collections catalogues and content management systems - through its key ideas; allowing it to form a nexus for the wider conversations taking place around it.</p><p>As a result we have built a new infrastructure with linked open data at its heart. We have adopted a pragmatic ontological approach to maintain the integrity of our data sources, while leaving open the possibility of translating this for a greater variety of ontologies in the future. The result is an online product with an underlying data structure that combines two networks of linkages: a data-driven, structured, ontological one; and an organic one driven by user behaviour, creating a flexible platform with long term value - the simplest possible solution to a complex problem.</p>
Figure 4. Bootstrap consensus neigbor-joining tree deduced from the cytochrome c oxidase subunit I in A revision of the Monopis monachella species complex (Lepidoptera: Tineidae) from China
Figure 4. Bootstrap consensus neigbor-joining tree deduced from the cytochrome c oxidase subunit I gene sequences. Numbers indicate bootstrap proportions (%).
FIGURE Phylogenetic relationships of the Coelastrella genus inferred from the 18S-ITS1-5.8S-ITS2 region. The Neighbor-Joining (NJ), Maximum Likelihood (ML) bootstrap values and Bayesian posterior probabilities (PP) are presented at the nodes (NJ/ML/PP). Only values above 75 are shown. Strains provided in this study are indicated in bold font. Authentic strains marked with asterisks. The scale bar represents the number of substitutions per site. The GenBank accession numbers of Coelastrella can be found in the Table 3. in Morphological and phylogenetic relations of members of the genus Coelastrella (Scenedesmaceae, Chlorophyta) from the Ural and Khentii Mountains (Russia, Mongolia)
FIGURE Phylogenetic relationships of the Coelastrella genus inferred from the 18S-ITS1-5.8S-ITS2 region. The Neighbor-Joining (NJ), Maximum Likelihood (ML) bootstrap values and Bayesian posterior probabilities (PP) are presented at the nodes (NJ/ML/PP). Only values above 75 are shown. Strains provided in this study are indicated in bold font. Authentic strains marked with asterisks. The scale bar represents the number of substitutions per site. The GenBank accession numbers of Coelastrella can be found in the Table 3.
Fig. 1. Neighbour-joining phylogenetic tree reconstructed using the 16S in Lysobacter humi sp. nov., isolated from soil
Fig. 1. Neighbour-joining phylogenetic tree reconstructed using the 16S rRNA gene sequences of strains FJY8T and related taxa. Numbers at branch nodes present bootstrap values (>50 %) obtained as percentages of 1000 replicates. Filled circles indicate the corresponding nodes recovered by using the maximum-parsimony algorithm. Bar, 0.02 substitutions per nucleotide position.
Fig. 1. Neighbour-joining phylogenetic tree derived using 16S rRNA gene sequences, showing the relationships between strain HNM0687T in Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan
Fig. 1. Neighbour-joining phylogenetic tree derived using 16S rRNA gene sequences, showing the relationships between strain HNM0687T and other type strains of the genus Gordonia. Only values above 50% are shown. Asterisks represent clades that were also recovered by the maximum-likelihood and maximum-parsimony methods. Bar, one nucleotide substitution per 100 nucleotides.
FIGURE 39. Neighbor–joining tree for 23 in Review of the genus Leucoma Hübner, 1822 (Lepidoptera: Erebidae: Lymantriinae) from China, with description of two new species
FIGURE 39. Neighbor–joining tree for 23 sequences of 11 species of Leucoma and two species of Lymantria based on K2P distance in DNA barcodes. Numbers on branches represent bootstrap support based on 1000 replicates; scale equals K2P genetic distance.
FIGURE 8. Neighbor-joining K2P in A shocking-red new species of Setanodosa Salmon, 1942 (Collembola: Brachystomellidae) from South Africa
FIGURE 8. Neighbor-joining K2P distance tree for COI of some Brachystomella and Setanodosa species (see Table 1 for locations).
FIGURE 1. Neighbour joining COI gene tree using uncorrected p in Description of the final instar larva of Orthetrum borneense Kimmins, 1936 (Odonata, Libellulidae), using rearing and molecular methods
FIGURE 1. Neighbour joining COI gene tree using uncorrected p–distance for adults of nine species and subspecies of Orthetrum plus two outgroup taXa, and a larva of O. borneense.
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Description of a new Kempnyia Klapálek from Brazil (Plecoptera: Perlidae) with life stages associated using DNA barcodes
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (450 bp) from Kempnyia KlapÁlek and related stoneflies from Rio de Janeiro, Brazil modeled by Kimura-2-parameter (K2P).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.