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3,878 results for “Molecular data”
Data for "Mechanically-Sensitive Fluorochromism by Molecular Domino Transformation in a Schiff Base Crystal"
<p>The dataset contains input and output files of computational chemistry by Quantum ESPRESSO and Gaussian softwares conducted on two polymorphic crystal structures of 4-nitro-N-salicylideneaniline.</p>
Raw differential gene expression data, data S1, from: Molecular cascades and cell type-specific signatures in ASD revealed by single cell genomics
<p>Genomic profiling in post-mortem brain from autistic individuals has consistently revealed convergent molecular changes. What drives these changes and how they relate to genetic susceptibility in this complex condition is not understood. We performed deep single nuclear RNA sequencing (snRNAseq) to examine cell composition and transcriptomics, identifying dysregulation of cell type-specific gene regulatory networks (GRNs) in autism, which we corroborated using snATAC-seq and spatial transcriptomics. Transcriptomic changes were primarily cell type-specific, involving multiple cell types, most prominently interhemispheric and callosal-projecting neurons, interneurons within superficial laminae, and distinct glial reactive states involving oligodendrocytes, microglia, and astrocytes. Autism-associated GRN drivers and their targets were enriched in rare and common genetic risk variants, connecting autism genetic susceptibility and cellular and circuit alterations in the human brain. This data is the raw differential gene expression comparing ASD versus CTL subjects for each cell cluster. </p>
Fig. 5. Mean Gonadosomatic Index for C in Color pattern variation in Cichla temensis (Perciformes: Cichlidae): Resolution based on morphological, molecular, and reproductive data
Fig. 5. Mean Gonadosomatic Index for C. temensis variants grouped by CPV grade. a) Females from the Igapó Açú (Region 1). b) Females from the rio Caures (Region 2). c) Males from the Igapó Açú region. d) Males from the rio Caures. A significant correlation between GSI and CPV Grade was found for males and females in both collecting regions, p <.01 for a, b, d, and d.
Fig. 4 in Color pattern variation in Cichla temensis (Perciformes: Cichlidae): Resolution based on morphological, molecular, and reproductive data
Fig. 4. Maximum-likelihood phylogeny of 50 sequences sampled from the paca and açu variants of Cichla temensis (Genbank accession numbers HQ230011 - HQ230016) The phylogeny was rooted a posteriori with Cichla species of the clade A (sensu Willis et al. 2010) (GU295691- GU295704). The scale represents an HKY85 genetic distance.
Fig. 3. a in Color pattern variation in Cichla temensis (Perciformes: Cichlidae): Resolution based on morphological, molecular, and reproductive data
Fig. 3. a) Mean (± SEM) lateral line scale counts for C. temensis, C. monoculus, and C. orinocensis. ANOVA showed no significant differences among the C. temensis variants but revealed significant differences interspecifically. Post hoc t tests (horizontal starred bar) revealed that all species were significantly different, p <0.0001*. b) Mean (± SEM) body depth to Standard Length ratio (adjusted for gonad size differential) for C. temensis, C. monoculus, and C. orinocensis. ANOVA showed no significant differences among the C. temensis variants but revealed significant differences interspecifically. Post hoc t tests (horizontal starred bar) revealed that all C. temensis were significantly different from both sympatric species, p <0.0001*.
Fig. 2 in Color pattern variation in Cichla temensis (Perciformes: Cichlidae): Resolution based on morphological, molecular, and reproductive data
Fig. 2. Collecting regions in two cyclically flooding drainages in the rio Amazon basin. Region 1, the Igapó-Açu region, a blackwater tributary complex of the rio Madeira, provided specimens of C. temensis and C. monoculus. Region 2, the rio Caures, a blackwater tributary of the rio Negro, provided specimens of C. temensis and C. orinocensis.
Figure 1 in Contribution to the knowledge of Parichoronyssus bakeri Morales-Malacara and Guerrero, 2007 (Mesostigmata: Macronyssidae): new locality and host-association records with additional molecular data
Figure 1 Light Microscopy images of the female Parichoronyssus bakeri. A – General view of the ventral idiosoma; B – General view of the dorsal idiosome; C – Close up of sternal shield; D – Close up of genital and anal shields; E – Gnathosoma and coxa of the Leg I, with the black arrow pointed out the spine-like projection; F – Close up of the dorsal shield. Scales: A and B 50µm, C-F 20µm.
FIG. 2 in Molecular data and culture observations show that the microfilamentous marine alga Uronema marinum Womersley is a member of the genus Okellya Leliaert & Rueness (Cladophorales, Chlorophyta)
FIG. 2. — Maximum likelihood phylogenetic tree of selected Cladophorales Haeckel, showing the position of the species Okellya marina (Womersley) Wetherbee, comb. nov. as sister to Okellya curvata (Printz) Leliaert & Rueness in the Okellyaceae Leliaert & Rueness family. Numbers shown at nodes represent RAxML rapid bootstrap values. The scale is in estimated substitutions per site in the concatenated 18S and 28S alignment.
FIG. 1 in Molecular data and culture observations show that the microfilamentous marine alga Uronema marinum Womersley is a member of the genus Okellya Leliaert & Rueness (Cladophorales, Chlorophyta)
FIG. 1. — Okellya marina (Womersley) Wetherbee, comb. nov. (strain 56a) from New South Wales: A, tuft of filaments; B, C, newly formed filaments of two and four cells attached by a discoid holdfast (asterisks), apical cells rounded; D, larger filaments occur with dense cytoplasm; E, F, filaments showing a single pyrenoid at the center of cells (arrowheads); G, H, pyrenoids stained with iodine solution (arrowheads); I-M, elongate zoospores (s) have differentiated in an intercalary cell (I) and escape from a pore at the apical end of cells (J-M: arrows); zoospores often fail to escape through the pore and germinate inside the sporangium (K-M), occasionally even forming holdfasts (asterisk in M). Scale bars: A, 50 μm; B, D-I, 10 μm; C, J-M, 20 μm.
Figure 6 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 6. Variation of the live adult male paratype GZNU20220705001 of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. A. Dorsolateral view; B. Dorsal view; C. Ventral view.
Figure 1 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 1. Sampling localities of Rana zhijinensis Luo, Xiao & Zhou, sp. nov., R. culaiensis, R. hanluica, and R. omeimontis in Guizhou Province, China. A. Guiguo Town, Zhijin County; B. Supu Town, Qianxi County; C. Zhujianshan Nature Reserve, Huangping County; D. Leigongshan National Nature Reserve, Leishan County.
Figure 2 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 2. Phylogenetic tree based on three mitochondrial genes and six nuclear genes. A. Maternal tree; B. Nuclear gene tree. In both phylogenetic tree, ultrafast bootstrap support (UFB) values from ML analyses/Bayesian posterior probabilities (BPP) from BI analyses are given beside nodes. Scale bars denote nucleotide substitutions per sites for mitochondrial and nuclear genes.
Figure 5 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 5. Morphological features of the live adult male holotype GZNU2018081606 of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. A. Dorsolateral view; B. Dorsal view; C. Ventral view; D. Egg cluster; E. Ventral view of hand and dark gray-blackish nuptial pad; F. Ventral view of foot.
Figure 4 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 4. Haplotype networks of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. and its related species constructed based on the nuclear gene sequences. Different species of the R. japonica group are shown as different colors.
Figure 3 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data
Figure 3. Phylogenetic tree based on four mitochondrial genes and six nuclear genes. In this phylogenetic tree, UFB from ML analyses/ BPP from BI analyses are given beside nodes. The scale bar represents 0.03 nucleotide substitutions per site. Red lines represent species delimitation results of bPTP and BPP.
Figure 3 in Synonymy of the water mite subgenera Orientmomonia and Kondia in the genus Momonia (Momoniidae, Acari): an evaluation based on morphology and molecular data
Figure 3 Male of Momonia(Orientmomonia) koreana. A – dorsal view of idiosoma; B – ventral view of idiosoma; C – left palp; D – I-L-1–6. E – IV-L-3–6. Scale bars: 100 μm.
Figure 5 in Synonymy of the water mite subgenera Orientmomonia and Kondia in the genus Momonia (Momoniidae, Acari): an evaluation based on morphology and molecular data
Figure 5 Maximum-likelihood phylogenetic tree based on the mitochondrial cytochrome oxidase subunit I (COI) gene sequences obtained for a set ofMomoniaspecimens. Bootstrap values (> 50%) related to the nodes are indicated (1,000 replicates).
Figure 1 in Synonymy of the water mite subgenera Orientmomonia and Kondia in the genus Momonia (Momoniidae, Acari): an evaluation based on morphology and molecular data
Figure 1 Provenance of the material used in the present study. Collection site A – Tatsuno City in Hyogo Prefecture; Collection site B – Aioi City in Hyogo Prefecture; Collection site C – Tsushima City in Nagasaki Prefecture.
Figure 4 in Synonymy of the water mite subgenera Orientmomonia and Kondia in the genus Momonia (Momoniidae, Acari): an evaluation based on morphology and molecular data
Figure 4 Female of Momonia(Kondia) sp. A – dorsal view of idiosoma; B – ventral aspect of unmounted specimen; C – ventral view of idiosoma; D – right palp; E – I-L-1–6; F – IV-L-3–6. Scale bars: 100 μm.
Figure 3 in Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data
Figure 3. Flow diagram for subspecies delineation using combined quantitative and qualitative standards. The threshold values assume the user is evaluating a case relying on mtDNA control region data. Percent Diagnosable (PD) is the smallest strata-specific correct classification score in a given comparison (e.g., PD50 in two-strata comparisons in Archer et al. 2017). The second box in the second row (other evidence to meet subspecies definition) allows for subspecies delineation when both conditions are not met using mtDNA. This box could be used either for the case when one condition is met and one unmet or when both just barely miss meeting the standards. For example, consider the case with PD <95% and dA> 0.004. Diagnosability could be achieved with morphological data or nuclear data that are sufficient for subspecies but not for full species.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.