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129 results for “Salvelinus”
A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis)
<p>Understanding how genetic diversity is distributed across spatiotemporal scales in species of conservation or management concern is critical for identifying large-scale mechanisms affecting local conservation status and implementing large-scale biodiversity monitoring programs. However, cross-scale surveys of genetic diversity are often impractical within single studies, and combining datasets to increase spatiotemporal coverage is frequently impeded by using different sets of molecular markers. Recently developed molecular tools make surveys based on standardized SNP panels more feasible than ever but require existing genomic information. Here, we demonstrate the utility of genome-wide SNPs reflective of range-wide genetic diversity for surveying populations across the native species range. These data can be leveraged to design SNP panels that allow datasets to be combined for large-scale analyses. We develop this resource for brook trout (<em>Salvelinus fontinalis</em>). We performed restriction site-associated DNA sequencing for wild brook trout from 82 locations spanning much of the native range and domestic brook trout from 24 hatchery strains used in stocking efforts. We identified over 24,000 SNPs putatively representing neutral and adaptive regions of the brook trout genome. We explored the ability of these SNPs to resolve relationships across spatial scales, including population structure, hatchery admixture, and outlier loci. Our dataset captures a wide spectrum of genetic diversity in native brook trout, offering a valuable resource for developing SNP panels. We highlight potential applications of this resource with the goal of increasing the integration of genomic information into decision-making for brook trout and other species of conservation or management concern.</p>
Data from: Rediscovery of a presumed extinct species, Salvelinus profundus, after re-oligotrophication
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Data from: Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis)
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Data from: Evolution and origin of sympatric shallow-water morphotypes of Lake Trout, Salvelinus namaycush, in Canada's Great Bear Lake
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A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis)
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Data from: Post-glacial recolonization of the North American Arctic by Arctic char (Salvelinus alpinus): genetic evidence of multiple northern refugia and hybridization between glacial lineages
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Data from: Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks
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Data from: Basic description and some notes on the evolution of seven sympatric morphs of Dolly Varden Salvelinus malma from the Lake Kronotskoe Basin
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Data from: Life-history characteristics and landscape attributes as drivers of genetic variation, gene flow and fine-scale population structure in Northern Dolly Varden (Salvelinus malma malma) in Canada
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Data from: Gene expression in the phenotypically plastic Arctic charr (Salvelinus alpinus): a focus on growth and ossification at early stages of development
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Data from: Supplementation stocking of lake trout (Salvelinus namaycush) in small boreal lakes: ecotypes influence on growth and condition
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Data from: Assessing conservation risks to populations of an anadromous Arctic salmonid, the northern Dolly Varden (Salvelinus malma malma), via estimates of effective and census population sizes and approximate Bayesian computation
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Data from: Differentiation at the MHCIIα and Cath2 loci in sympatric Salvelinus alpinus resource morphs in Lake Thingvallavatn
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Data from: Density-dependent diel activity in stream-dwelling Arctic charr Salvelinus alpinus
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Data from: Genetic diversity, admixture, and hatchery influence in Brook Trout (Salvelinus fontinalis) throughout western New York State
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Data from: Allometric scaling of eDNA production in stream-dwelling brook trout (Salvelinus fontinalis) inferred from population size structure
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Data from: Estimates of gene flow and dispersal in wild riverine Brook Trout (Salvelinus fontinalis) populations reveal ongoing migration and introgression from stocked fish
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Data from: Genetic variability and structuring of Arctic charr (Salvelinus alpinus) populations in northern Fennoscandia
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Data from: Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses
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Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing
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Allen Brain Atlas
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.