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4,010 results for “Stabilization”

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zenodo40/100

Data from: Unexpected stability in faunal population abundances following an estuary-wide collapse of oysters

<p>Data describing the number and lengths of fish and macroinvertebrates sampled from long-term fisheries independent sampling in Florida&rsquo;s coastal waters. Original data were collected by the Florida Fish and Wildlife Conservation Commission (FWC) Fish and Wildlife Research Institute (FWRI).</p>

opencc-by-4.0Mar 2024View details →
zenodo40/100

Dataset of the manuscript: Efficient removal of nanoplastics from industrial wastewater through synergetic electrophoretic deposition and particle-stabilized foam formation

<p>This dataset is based on the data underlying the figures shown in the manuscript titled Efficient removal of nanoplastics from industrial wastewater through synergetic electrophoretic deposition and particle-stabilized foam formation. A readme file is uploaded to decribe the content of all data folders. All data are sorted according to their appearance in the figures of the main manuscript.</p>

opencc-by-4.0Mar 2024View details →
zenodo40/100

DATASETS of On the Chemical Stability of DNA-Stabilized Silver Nanoclusters

<h3>The datasets uploaded here are the one published in the following journal article:</h3> <p>On the Chemical Stability of DNA-Stabilized Silver Nanoclusters, G. Romolini, C. Cerretani<em>, C. B. Mollerup, T. Vosch</em>, 2024, ACS Omega, 2024, 10.1021/acsomega.4c08322.&nbsp;</p> <p><a title="DOI URL" href="https://doi.org/10.1021/acsomega.4c08322">https://doi.org/10.1021/acsomega.4c08322</a></p>

opencc-by-4.0Nov 2024View details →
zenodo40/100

IMU-Based Tip-Over Dataset for Space Exploration Rover Dynamics and Stability Analysis

<p>This dataset provides a comprehensive collection of Inertial Measurement Unit (IMU) sensor data captured from a space exploration rover under varying conditions of terrain, speed, and inclination. The primary goal of this dataset is to enable the study of dynamic stability, specifically the detection and analysis of tip-over events, which are critical for safe and efficient operation of autonomous rovers in extraterrestrial environments.</p> <p>&nbsp;</p> <p><em>This dataset is provided by the Robotics Innivation Center, DFKI GmbH.</em></p> <p><em>The grant was provided by&nbsp;Federal Ministry for Economic Affairs and Climate Action&nbsp;</em></p> <p><em>Grant number: 50RA2124</em></p>

opencc-by-4.0Nov 2024View details →
zenodo40/100

Dataset of the publication: Molecular stabilization of chemically exfoliated bare MnPS3 layers

<p>Dataset of the publication: Molecular stabilization of chemically exfoliated bare MnPS3 layers</p> <p><span>&nbsp;<span>I. Brotons-Alc&aacute;zar, R. Torres-Cavanillas, M. Morant-Giner, M. Cvikl, S. Ma&ntilde;as-Valero, A. Forment-Aliaga, E. Coronado, <em>Dalton T</em> <strong>2021</strong>, <em>50</em>, 16281.</span> </span></p> <p><span><span>DOI: 10.1039/d1dt02536h</span></span></p>

opencc-by-4.0Nov 2024View details →
zenodo40/100

Improving Stability of Tear Film Lipid Layer via Concerted Action of Two Drug Molecules: A Biophysical View

<p>Surface pressure/area isotherms, stress relaxation transients, molecular dynamic simulation parameters of surface films composed of tear lipids and drug molecules.</p>

opencc-by-4.0Dec 2020View details →
zenodo40/100

Native MS dataset for: "Caldendrin and myosin V regulate synaptic spine apparatus localization via ER stabilization in dendritic spines."

<p>Native mass spectrometry dataset used in: <strong>Caldendrin and myosin V regulate synaptic spine apparatus localization via ER stabilization in dendritic spines.</strong> Anja Konietzny, Jasper Grendel, Alan Kadek, Michael Bucher, Yuhao Han, Nathalie Hertrich, Dick H. W. Dekkers, Jeroen A. A. Demmers, Kay Grünewald, Charlotte Uetrecht and Marina Mikhaylova. <i>The EMBO Journal</i> (2021) e106523. doi:<a href="https://doi.org/10.15252/embj.2020106523">10.15252/embj.2020106523</a></p><p>&nbsp;</p><p><strong>Description:</strong></p><p>Native mass spectrometry (MS) analysis of the stoichiometry and ion occupancy of recombinant human calmodulin (CaM) and recombinant rat caldendrin (CaD) complex with synthetic mouse myosinV IQ1 (myoIQ) motif in the presence / absence of excess Ca2+ and Mg2+ ions.</p><p><strong>Sample processing:</strong></p><p>Full-length CaD and CaM as well as the synthetic myoVa peptide were buffer exchanged into 150 mM aqueous ammonium acetate solution (pH&nbsp;7.4). CaM was twice passed through a Bio-Spin P-6 gel filtration spin column (6 kDa cut-off, <i>Bio-Rad</i>), CaD and the myoVa peptide were buffer exchanged through five cycles of tenfold dilution and re-concentration using centrifugal concentrators Vivaspin 500 (10 kDa cut-off, <i>Sartorius</i>) or Amicon Ultra 0.5mL (3 kDa cut-off, <i>Merck/Millipore</i>), respectively. Desalted proteins were introduced into an Orbitrap Q Exactive UHMR mass spectrometer (<i>Thermo Scientific</i>) via static nanoelectrospray ionization from in-house prepared gold-coated borosilicate glass capillaries Kwik-Fil 1B120F-4 (<i>World Precision Instruments</i>). Proteins were sprayed and analysed at 8.5 µM concentration in ammonium acetate alone or supplemented with 200 µM calcium acetate and 100 µM magnesium acetate (both for trace metal analysis, <i>Sigma-Aldrich</i>). For interaction analysis, CaM and/or caldendrin were mixed with myoVa peptide which had final concentration of 8.5 µM (low concentration) or 34 µM (high concentration). The mass spectrometer was tuned for best signal quality and intensity, keeping ion activation and unfolding minimal. Namely, electrospray voltage was kept at 1.3 kV, source desolvation temperature 250°C, in-source desolvation -50 V, ion transfer profile "high m/z", analyzer profile "low m/z", analyzer target resolution 12500 acquiring in mass range 500 – 9000 m/z. Nitrogen was used as collision gas in HCD cell at relative gas pressure setting 7.0 with gentle collisional activation by 10 V HCD voltage gradient.</p><p><strong>Data processing:</strong></p><p>Raw spectra were averaged over at least 50 scans for mass deconvolution and peak assignment in UniDec 4.4.1 package (<i>Marty et al., 2015</i>). The averaged spectra were exported for ZENODO deposition using <i>Thermo Scientific</i> FreeStyle 1.5.93.34 as single-scan Thermo .raw files (including instrumental parameters metadata) as well as in plain m/z vs intensity .txt files.</p>

opencc-by-4.0Dec 2021View details →
zenodo40/100

Metadata of " Stability of Selected Hydrogen Bonded Semiconductors in Organic Electronic Devices"

<p>Metadata of &quot; Stability of Selected Hydrogen Bonded Semiconductors in Organic Electronic Devices&quot;</p>

opencc-by-4.0Sep 2019View details →
zenodo40/100

Fig. 10 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 10. Trends in the relative abundance of trophic guilds in Lake Fenéki (Piscivores: y = 0.06 + 0.003x; R2 = 0.757; P&gt; 0.00001)

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 9 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 9. Proportion of each species in the cumulative abundance of non-native fish species in Lake Fenéki

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 7 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 7. PCA biplot of the arcsin-square root transformed relative abundance data of the whole sampling period (1992–2011) (Variables: Sampling years; Objects: Relative abundances) (abbreviations were constructed from the Latin names of the species, using the first 3 characters of genus and species

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 5 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 5. Estimated number of species (SD's ignored in order to improve visibility) as a function of number of individuals collected in each sampling year

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 8 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 8. PCA biplot of the arcsin-square root transformed relative abundance data of the period 1994–2011 (Variables: Sampling years; Objects: Relative abundances)

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 4 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 4. Relationships between the age of Lake Fenéki and the Shannon–Weaver index (y = 0.414ln(x) + 0.852; R2 = 0.772; P &lt;0.0001)

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 3 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 3. Relationships between the age of Lake Fenéki and the number of fish species (y = 4.141ln(x) + 3.807; R2 = 0.759; P &lt;0.0001)

opencc-by-4.0Dec 2012View details →
zenodo40/100

Fig. 1 in Long-Term Development Of Fish Assemblage In Lake Fenéki (Kis-Balaton Water Protection System, Hungary): Succession, Invasion And Stabilization

Fig. 1. Overlooking map of the Balaton-catchment, with the sampling site (Dark rectangle marked by the arrow indicates the flooded area of Lake Fenéki)

opencc-by-4.0Dec 2012View details →
zenodo40/100

Sodium binding stabilizes the outward-open state of SERT by limiting bundle domain motions

<p>Measured distances, angles, RMSD, RMSF, vestibule diameters and principal components along with the structural representations in pymol pse files and the manuscript images. The measurements have a 1ns time resolution.</p> <p>&nbsp;</p> <p>DATA_sodium_stabilize_SERT.zip<br> ├── fig1<br> │&nbsp;&nbsp; ├── fig1_v3.png<br> │&nbsp;&nbsp; ├── occ_3ions_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── occ_Cl_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── occ_ionless_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── out_3ions_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── out_Cl_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; └── out_ionles_rmsf_TMH_fitted_250_500.xvg<br> ├── fig2<br> │&nbsp;&nbsp; ├── distances_n_angles_fig2.pse<br> │&nbsp;&nbsp; ├── fig2_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM1b-TM9up.dat<br> ├── fig3<br> │&nbsp;&nbsp; ├── fig3_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM9-TM8-TM6a.dat<br> ├── fig4<br> │&nbsp;&nbsp; ├── cluster_centr_250_500_concat_bundle-fit_bundle-measure_in_fig4.pse<br> │&nbsp;&nbsp; ├── fig4_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM6a-TM6b.dat<br> ├── fig5<br> │&nbsp;&nbsp; ├── concat_0_500_dt_RMSF_bundle_fit_bundle_measure_colored.pse<br> │&nbsp;&nbsp; ├── fig5_v3.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> ├── fig6<br> │&nbsp;&nbsp; ├── fig6_v5.png<br> │&nbsp;&nbsp; ├── occ_3ions_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── occ_Cl_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── occ_ionless_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_3ions_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_Cl_extreme_scaffoldFIT_bundleMEASURE1.pdb<br> │&nbsp;&nbsp; ├── out_Cl_extreme_scaffoldFIT_bundleMEASURE2.pdb<br> │&nbsp;&nbsp; ├── out_Cl_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_ionless_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; └── scaffoldFIT_bundleMEASURE_global_covar_extrame1.pse<br> ├── fig7<br> │&nbsp;&nbsp; ├── fig7_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.radii_refitted.dat<br> └── Sfig1<br> &nbsp;&nbsp;&nbsp; ├── distances_n_angles_fig2.pse<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; └── Sfig1_v2.png</p> <p>&nbsp;</p>

opencc-by-4.0Jan 2022View details →
dryad40/100

Data from: Long-term and year-to-year stability and its drivers in a Mediterranean grassland

<p><span>Understanding the mechanisms underlying community stability has become an urgent need in order to protect ecosystems from global change and resulting biodiversity loss. While community stability can be influenced by richness, synchrony in annual fluctuations of species, species stability and functional traits, the relative contributions of these drivers to stability are still unclear. In semi-natural grasslands, land-use changes such as fertilization might affect stability by decreasing richness and influencing year-to-year fluctuations. In addition, they can promote long-term directional trends, shifting community composition and influencing grassland maintenance. Thus, it is important to consider how species and community stability vary year-to-year but also in the long term. </span></p> <p><span>Using a 14-year vegetation time series of a species-rich semi-natural Mediterranean grassland, we studied the relative importance of richness, synchrony, species stability and functional traits on community stability. To assess land-use change effects on stability, we applied a fertilization treatment. To distinguish stability patterns produced by year-to-year fluctuations from those caused by long-term trends, we compared the results obtained using a detrending approach from those without detrending. </span></p> <p><span>Stability is influenced by richness, synchrony and functional traits. Fertilization decreases species and community stability by promoting long-term trends in species composition, favouring competitive species and decreasing richness. Studying stability at the community and species level, and accounting for the effect of trends is essential to understand stability and its drivers more comprehensively.</span></p>

opencc-zeroFeb 2022View details →
zenodo40/100

Species Portfolio Effects Dominate Seasonal Zooplankton Stabilization Within a Large Temperate Lake

<p>The raw data file&nbsp;is available online for public access&nbsp;(<a href="https://data.ontario.ca/dataset/lake-simcoe-monitoring">https://data.ontario.ca/dataset/lake-simcoe-monitoring</a>). Download the 1980-2019 csv files and open up the file named &quot;Simcoe_Zooplankton&amp;Bythotrephes.csv&quot;. Copy and paste the zooplankton sheet into a new excel file called &quot;Simcoe_Zooplankton.csv&quot;.&nbsp;The column ZDATE in the excel file needs to be switched from GENERAL to SHORT DATE so that the dates in the ZDATE column read &quot;YYYY/MM/DD&quot;. Save as .csv in appropriate R folder.&nbsp;The data file &quot;simcoe_manual_subset_weeks_5&quot; is the raw data that has been subset for the main analysis of the article using the .R file &quot;Simcoe MS - 5 Station Subset Data&quot;. The .csv file produced from this&nbsp;must then be&nbsp;manually edited to remove&nbsp;data points that do not have 5 stations per sampling period as well as by&nbsp;combining data points that should fall into a single&nbsp;week.&nbsp;The &quot;simcoe_manual_subset_weeks_5.csv&quot;&nbsp;is then used for the calculation of variability, stabilization, asynchrony, and Shannon Diversity for each year in the .R file &quot;Simcoe MS - 5 Station Calculations&quot;.&nbsp;The final .R file &quot;Simcoe MS - 5 Station Analysis contains the final statistical analyses as well as code to reproduce the original figures. Data and code for main and supplementary analyses are also available on GitHub (https://github.com/reillyoc/ZPseasonalPEs).&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Mar 2022View details →
dryad40/100

Stability of rocky intertidal communities in response to species removal varies across spatial scales

<p>Improving our understanding of stability across spatial scales is crucial in the current scenario of biodiversity loss. Still, most empirical studies of stability target small scales. Here we experimentally removed the local space-dominant species (macroalgae, barnacles, or mussels) at eight sites spanning more than 1000 km of coastline in north- and south-central Chile, and quantified the relationship between area (the number of aggregated sites) and stability in aggregate community variables (total cover) and taxonomic composition. Resistance, recovery, and invariability increased nonlinearly with area in both functional and compositional domains. Yet, the functioning of larger areas achieved a better, albeit still incomplete, recovery than composition. Compared with controls, smaller disturbed areas tended to overcompensate in terms of total cover. These effects were related to enhanced available space for recruitment (resulting from the removal of the dominant species), and to increasing beta diversity and decaying community-level spatial synchrony (resulting from increasing area). This study provides experimental evidence for the pivotal role of spatial scale in the ability of ecosystems to resist and recover from chronic disturbances. This knowledge can inform further ecosystem restoration and conservation policies.</p>

opencc-zeroMar 2022View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record