Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
25,372
datasets available to search
ShareScore release 0.7.1
Dataset results
25,372 results for “Transcriptomics”
Figure 2b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 2b. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 2a. cephalic plate, dorsal view Figure 2b. ocelli and Tömösváry's organ. Abbreviations: ocellus (O) and Tömösváry's organ (T) <br> ocelli and Tömösváry's organ. Abbreviations: ocellus (O) and Tömösváry's organ (T)
Figure 1. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 1. - Habitus of Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype, ex situ.
Figure 2a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 2a. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 2a. cephalic plate, dorsal view Figure 2b. ocelli and Tömösváry's organ. Abbreviations: ocellus (O) and Tömösváry's organ (T) <br> cephalic plate, dorsal view
Raw data used for COI delineation of the Eupolybothrus species: Authors: Stoev et al. 2013 Data type: genomic The archive contains the following data: 1) fasta-Alignment as the basis for all analyses (.FASTA), 2) mega-file for the calculation of the genetic distances and the NJ tree (.MDSX), 3) NJ-tree in Newick format (.NWK), 4) graph of the TCS Software for the Statistical Parsimony method (.GRAPH) File: E_cavernicolus.rar from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
<p>Authors: Stoev et al. 2013 Data type: genomic The archive contains the following data: 1) fasta-Alignment as the basis for all analyses (.FASTA), 2) mega-file for the calculation of the genetic distances and the NJ tree (.MDSX), 3) NJ-tree in Newick format (.NWK), 4) graph of the TCS Software for the Statistical Parsimony method (.GRAPH) File: E_cavernicolus.rar</p>
Figure 9a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 9a. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 9a. close up of the clusp of setae on male prefemur 15 Figure 9b. close up of the setose protuberance on male prefemur 15 <br> close up of the clusp of setae on male prefemur 15
Figure 6a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 6a. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 6a. tergite 14 and intermediate tergite, posteriodorsal view. Abbreviations: seta-free areas (sfa). Figure 6b. pretarsus of leg 10, ventral view. Abbreviations: anterior accessory claw (a), posterior accessory claw (p). <br> tergite 14 and intermediate tergite, posteriodorsal view. Abbreviations: seta-free areas (sfa).
Figure 10b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 10b. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 10a. close up of the tip of prefemoral spine p Figure 10b. coxal pore pit, meso-ventral view <br> coxal pore pit, meso-ventral view
Figure 16. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 16. - Eupolybothrus leostygis (Verhoeff, 1899), male: prefemur 15 showing the bare knob, dorsal view.
Figure 15b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 15b. - Eupolybothrus leostygis (Verhoeff, 1899), male. Figure 15a. tergite 14 and intermediate tergite, dorsal view Figure 15b. close up of posterior part of prefemur of leg 14 showing the expanded distal part bearing feebly defined setose protuberance <br> close up of posterior part of prefemur of leg 14 showing the expanded distal part bearing feebly defined setose protuberance
Figure 14a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 14a. - Eupolybothrus leostygis (Verhoeff, 1899), male. Figure 14a. ocelli Figure 14b. forcipules, ventral view <br> ocelli
Figure 20c. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 20c. - Gene annotation. Original data available from GigaScience GigaDB (Stoev et al. 2013). Figure 20a. E-value, identity and species distribution statistics of the sequences that can find homologs on Nr database Figure 20b. COG functional classification of the transcripts Figure 20c. GO categories of the transcripts <br> GO categories of the transcripts
Figure 8b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 8b. - Eupolybothrus cavernicolus Komerički & Stoev sp. n., male paratype. Figure 8a. prefemur 15, mesoventral view. Abbreviations: prefemoral knob (pk), circular setose protuberance (cp), cluster of setae (sc). Figure 8b. close up of the prefemoral knob, ventral view <br> close up of the prefemoral knob, ventral view
Figure 18b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 18b. - Prefemur of male leg 15. From Stoev et al. (2010). Figure 18a. Eupolybothrus caesar Figure 18b. Eupolybothrus spiniger <br> Eupolybothrus spiniger
Figure 15a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 15a. - Eupolybothrus leostygis (Verhoeff, 1899), male. Figure 15a. tergite 14 and intermediate tergite, dorsal view Figure 15b. close up of posterior part of prefemur of leg 14 showing the expanded distal part bearing feebly defined setose protuberance <br> tergite 14 and intermediate tergite, dorsal view
Figure 13. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 13. - Entrance of cave Miljacka II, type locality of Eupolybothrus cavernicolus Komerički & Stoev sp. n.
Figure 18a. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 18a. - Prefemur of male leg 15. From Stoev et al. (2010). Figure 18a. Eupolybothrus caesar Figure 18b. Eupolybothrus spiniger <br> Eupolybothrus caesar
Figure 19. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 19. - Delineation of Eupolybothrus species – Neighbor joining tree K2P distances. Visualised are the clusters obtained from the reversed Statistical Parsimony (SP) method and the Automatic Barcoding Gap Discovery (ABGD) procedure. Bootstrap support for the identified lineages are given above. The intraspecific genetic variability is given for each cluster. Source data is available in Suppl. material 1.
Figure 20b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 20b. - Gene annotation. Original data available from GigaScience GigaDB (Stoev et al. 2013). Figure 20a. E-value, identity and species distribution statistics of the sequences that can find homologs on Nr database Figure 20b. COG functional classification of the transcripts Figure 20c. GO categories of the transcripts <br> COG functional classification of the transcripts
Figure 17b. from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
Figure 17b. - Prefemur of male leg 15. From Stoev et al. (2010). Figure 17a. Eupolybothrus tabularum Figure 17b. Eupolybothrus excellens <br> Eupolybothrus excellens
De novo transcriptome assemblies for the spiny mouse (Acomys cahirinus)
<p>Transcriptome assemblies generated per https://dx.doi.org/10.1101/076067 (preprint) / https://dx.doi.org/10.17504/protocols.io.ghebt3e (protocol). Manuscript available at Scientific Reports.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.