Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
99
datasets available to search
ShareScore release 0.9.0
Dataset results
99 results for “bacterial genome”
C. elegans genomic response to Konza Prairie Soil bacterial environment
GEO Series GSE15923. Caenorhabditis elegans. 72 samples. Type: Expression profiling by array.
Genome annotations of bacterial scaffold sequences obtained from surfaces of the International Space Station
<p>Master annotations in GFF3 format, containing both scaffold sequences and annotations, of 226 bacterial isolates obtained from the International Space Station (ISS) during Microbial Tracking-1 flight experiments. These files can be viewed directly in Artemis or IGV. The analysis was performed with Prokka 1.14.5 (<a href="https://doi.org/10.1093/bioinformatics/btu153">Seemann, 2014</a>).</p> <p>Raw sequencing data and sequence assemblies in FASTA format can be downloaded from the NASA GeneLab repository <a href="https://genelab.nasa.gov/">https://genelab.nasa.gov</a>, the first comprehensive space-related omics database.</p>
BACTERIAL_GENOME_METAGENOMICS_FINAL_EXAM
Open the record for dataset details and reuse information.
Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection
GEO Series GSE33269. Anopheles gambiae. 11 samples. Type: Expression profiling by array.
ISS Surfaces Bacterial Genomes from MT-2 (ISS-MOP)
Draft genomes of various bacterial phyla isolated from different locations on the International Space Station as part of the Microbial Tracking 2 mission (ISS-MOP).
Genome sequencing of Staphylococcus, Burkholderia, and Ralstonia bacterial isolates isolated from the ISS
This repository holds genome assemblies for Staphylococcus, Burkholderia, and Ralstonia bacterial isolates isolated from the ISS between the years of 2006-2015. Information on the overall microbial isolation effort is stored under NASA's Life Science Data Archive experiment 13823 (https://lsda.jsc.nasa.gov/Experiment/exper/13823). For the genomes presented here, isolates were received from NASA's Johnson Space Center and their genomes were sequenced and assembled thanks to NASA Space Biology awards to Michael D. Lee (NNH16ZTT001N-MOBE) and Aubrie O'Rourke (80NSSC17K0035).
Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (E. coli RNA-Seq)
GEO Series GSE173345. Escherichia coli. 2 samples. Type: Expression profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [ChIP-exo]
GEO Series GSE54403. Escherichia coli str. K-12 substr. MG1655. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [ChIP-seq]
GEO Series GSE54404. Escherichia coli str. K-12 substr. MG1655. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale
GEO Series GSE54407. Escherichia coli str. K-12 substr. MG1655. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (S. flexneri RNA-Seq)
GEO Series GSE173346. Shigella flexneri. 2 samples. Type: Expression profiling by high throughput sequencing.
A Targeted Genome-wide Approach to Elucidate and Control Bacterial Adhesion to Physicochemically Diverse Biomaterials
GEO Series GSE274727. Escherichia coli. 20 samples. Type: Other.
Genome-wide association study and transcriptome analysis discover novel genes for bacterial leaf streak resistance in rice
GEO Series GSE229200. Oryza sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (S fflexneri ChIP-exo)
GEO Series GSE173347. Shigella flexneri. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [RNA-seq]
GEO Series GSE54405. Escherichia coli str. K-12 substr. MG1655. 2 samples. Type: Expression profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [TSS-seq]
GEO Series GSE54406. Escherichia coli str. K-12 substr. MG1655. 4 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T
GEO Series GSE173348. Escherichia coli; Shigella flexneri. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Host imprinting on bacterial genomes-rapid, divergent evolution in individual hosts
GEO Series GSE19917. Escherichia coli. 12 samples. Type: Expression profiling by array.
Simulated Reads of Symbiotic Bacterial Genomes
<p>Simulated Reads of Symbiotic Bacterial Genomes</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.