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139 results for “bayesian analysis”
Figure 9 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 9. Timing of dispersal of Otariidae into the Southern Hemisphere, as constrained by molecular clock (Yonezawa et al., 2009), fossil, and climatic data. Youngest ages of fossil taxa Hydrarctos lomasiensis (Muizon, 1978; Pilleri, 1990; Ehret et al., 2012) and Arctocephalus sp. nov. (Avery & Klein, 2011) indicated by circles, with possible oldest ages indicated by the dashed lines. Temperature data from Fedorov et al. (2013) and Rousselle et al. (2013) based on Ocean Deep-drilling Program sites 1021 (high latitude), 1010 (subtropical), and U1338 (tropical). Opal mass accumulation rates (MAR) from Farrell et al. (1995). Vertical red line indicates maximum sea surface temperature (SST) temperature tolerance reconstructed for ancestor of southern clade. Green horizontal bar indicates the most likely time period of dispersal into the Southern Hemisphere from the North Pacific, when subtropical SSTs were depressed and equatorial productivity was high.
Figure 8 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 8. Ancestral maximal sea surface temperature (SST) tolerance for Otariidae. Phylogeny used was the EX combined evidence phylogeny, which excludes fossil taxa with 50% or fewer cells coded for morphology. Fossil taxa are excluded. Extinct taxa are annotated with †.
Figure 7 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 7. Pattern of otariid dispersal based upon Bayesian ancestral area reconstruction presented in Figure 6. Numbers in circles represent major centres of origin, and with directions of dispersals indicated by arrows. Less certain dispersal routes are indicated by black dashed lines. 1, origin of Otariidae in North Pacific; 2, origin of Southern Hemisphere clade in eastern South Pacific; 3, dispersal of ancestor of Phocarctos to New Zealand; 4, dispersal of ancestor of Arctocephalus to South Africa; 5, tentative dispersal of Arctophoca tropicalis to Southern Ocean; 6, dispersal of Arctophoca gazella to Southern Ocean; 7, dispersal of Otaria and Arctophoca australis to Atlantic coastline of South America; 8, dispersal of Arctop. australis to New Zealand and Australia; 9, tentative dispersal of Arctocephalus to Australia from South Africa; 10, dispersal of Arctocephalus philippii to the west coast of North America; 11, dispersal of Zalophus to the Galapagos. Historic presence of sea lions (grey silhouettes) and fur seals (black silhouettes) on map indicated. Dispersal of Neophoca into Indian Ocean not shown.
Figure 6 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 6. Results of Bayesian (A) and maximum parsimony (B) ancestral area reconstruction. Phylogeny used was the EX combined evidence phylogeny, which excludes fossil taxa with 50% or fewer cells coded for morphology. Key in lower left corner is for both A and B. Extinct taxa indicated by †. RASP in figure key refers to the program used for Bayesian ancestral character state reconstruction.
Figure 4 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 4. Results of Bayesian phylogenetic analysis of molecules. Mitochondrial DNA (A) includes cytochrome b and d-loop sequences. Nuclear DNA (B) includes interphotoreceptor retinoid binding protein 3, growth hormone receptor, and feline sarcoma oncogene gene sequences. Fur seal icons in black represent members of Arctocephalinae and sea lion icons in grey represent members of Otariinae. Nodes with high support (posterior probability ≥ 0.95) are indicated by a black circle; nodes with moderate support (posterior probability = 0.90−0.94) are indicated by a white circle. Extinct taxa are annotated with †.
Figure 2 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 2. Results of prior analyses of otariid phylogeny using molecular data. Fur seal icons in black represent members of Arctocephalinae and sea lion icons in grey represent members of Otariinae.
Figure 3 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 3. Results of maximum parsimony phylogenetic analysis of morphological characters. Fur seal icons in black represent members of Arctocephalinae and sea lion icons in grey represent members of Otariinae. Nodes with high support (bootstrap ≥ 70) are indicated by a black circle; nodes with moderate support (bootstrap = 50–70) are indicated by a white circle. Extinct taxa are annotated with †.
Figure 1 in Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis
Figure 1. Results of prior analyses of otariid phylogeny using morphological data. Fur seal icons in black represent members of Arctocephalinae and sea lion icons in grey represent members of Otariinae. Extinct taxa are annotated with †.
Figure 1. Bayesian tree inferred from the 18S in A molecular analysis of the phylogenetic position of the suborder Cavernicola within the Tricladida (Platyhelminthes), with the description of a new species of stygobiont flatworm from Benin
Figure 1. Bayesian tree inferred from the 18S rDNA sequences showing the relationship of the new Novomitchellia species to other Tricladida species included in this analysis. Maximum likelihood (ML) yielded the same topology. Asterisks at nodes indicate posterior probabilities = 1/bootstrap values> 75% obtained respectively in the ML and Bayesian inference analyses. Scale bar: number of substitutions per nucleotide position.
Figures 5–6. Optimal trees obtained under Bayesian analyses. Fig. 5. Mkv model. Fig. 6 in Phylogenetic analysis of Micrathena and Chaetacis spiders (Araneae: Araneidae) reveals multiple origins of extreme sexual size dimorphism and long abdominal spines
Figures 5–6. Optimal trees obtained under Bayesian analyses. Fig. 5. Mkv model. Fig. 6. MkvG model. Posterior probabilities values are indicated below branches.
FIGURE. Maximum clade credibility tree of a post-burnin Bayesian analysis (100 million generations), based on nuclear (agt1, ETS, g3pdh, phyC, rpb2) and plastid (atpB–rbcL, matK, rps16, ycf1 pos. 1113-2103, ycf1 pos. 4492-5440) data. Above the branches, Bayesian posterior probabilities (PP) and maximum-likelihood bootstrap support (BS) are shown (PP/BS). The scale bar below the tree shows the branch length for 0.004 substitutions per nucleotide position. Capital letters at the branches are referred to in the tree description. in Re-evaluation of the Amazonian Hylaeaicum (Bromeliaceae: Bromelioideae) based on neglected morphological traits and molecular evidence
FIGURE. Maximum clade credibility tree of a post-burnin Bayesian analysis (100 million generations), based on nuclear (agt1, ETS, g3pdh, phyC, rpb2) and plastid (atpB–rbcL, matK, rps16, ycf1 pos. 1113-2103, ycf1 pos. 4492-5440) data. Above the branches, Bayesian posterior probabilities (PP) and maximum-likelihood bootstrap support (BS) are shown (PP/BS). The scale bar below the tree shows the branch length for 0.004 substitutions per nucleotide position. Capital letters at the branches are referred to in the tree description.
FIGURE 27. Majority-rule consensus tree from Bayesian analysis using 16S in Revision of the French Terebellidae sensu stricto (Annelida, Terebelliformia), with descriptions of nine new species
FIGURE 27. Majority-rule consensus tree from Bayesian analysis using 16S. Asterisk indicates posterior probability> 80%. Text in red refers to specimens sequenced during this study.
Data and code for "Spatial evolution of human cultures inferred through Bayesian phylogenetic analysis."
<p>Data and code for "Spatial evolution of human cultures inferred through Bayesian phylogenetic analysis."</p>
Data from: FEATHER: automated analysis of force spectroscopy unbinding and unfolding data via a Bayesian algorithm
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Data from: Reliability modelling and analysis of a multi-state element based on a dynamic Bayesian network
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How fitness consequences of early-life conditions vary with age in a long-lived seabird: a Bayesian multivariate analysis of age-specific reproductive values
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Data from: Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships
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Data from: Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan
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Data from: Association between metabolic syndrome components and the risk of developing nephrolithiasis: Bayesian meta-analysis and meta-regression with dose-response analysis
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Data from: Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius)
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.