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GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2012
A quadrat survey was conducted in October 2012 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced as needed in future years to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2013
A quadrat survey was conducted in October 2013 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2014
A quadrat survey was conducted in October 2014 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2015
A quadrat survey was conducted in October 2015 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Visual survey of insect communities on Iva frutescens in summer 2013 and 2014 on Sapelo Island, Georgia
Visual surveys were conducted in summer 2013 and 2014 to record the insect fauna that occurred on patches of Iva frutescens. Forty-four patches of Iva frutescens at three locations on Sapelo Island, Georgia, were marked for repetitive surveys. Thirty-eight of these patches were sampled in 2014. The patches were visually surveyed every three days from May 29 - June 15, 2013, and from June 1 - July 29, 2014, and the taxon and abundance of insects were recorded. This submission contains three data tables: 1. Insect fauna of Iva patches in 2013. This data set includes observations of 44 patches on 6 sampling dates, and includes Armases crab data. 2. Insect fauna of Iva patches in 2014. This data set includes observations of 38 patches on 20 sampling dates. 3. Structure of Iva patches on Sapelo Island in 2013. This data set contains the dimensions (Length, Width, Height) and surrounding environments of the Iva patches that were surveyed in 2013. The GPS locations of the patches were measured in 2014.
Mesocosm experiment on fresh marsh plant community responses to salinity pulses in 2014 and 2015
We established mesocosm communities using seven freshwater species (Zizaniopsis miliacea, Pontederia cordata, Persicaria hydropiperoides, Peltandra virginica, Ludwigia peploides, Sagittaria lancifolia and Eleocharis palustris) collected in the same freshwater marsh (31°20’16”N, 81°27’52”W) between Apr 19th and Apr 22nd, 2014, and the sediments were collected from a freshwater pond (31°23'54"N, 81°16'47"W) on Sapelo Island, GA at the same time. Our experimental unit was a plastic round swimming pool (h = 18 cm, r = 122 cm) filled to the top with homogenized sediments. Each unit consisted of 2 individuals of Zizaniopsis, Pontederia, Peltandra and Sagittaria, 5 – 8 Persicaria and Ludwigia separately. Eleocharis was mixed up with other species, so there were uneven numbers in each unit. From May 22 to August 19, 2014, the mesocosm communities were treated with three salinity levels (3, 5, and 10 psu: practical salinity units) and five exposure durations (5, 10, 15, 20 and 30 days per month), relative to a freshwater control (n=3 per treatment combination). Except for 30 days treatment which equals saline press treatment, plants were watered with daily freshwater after treated with saline water for 5, 10, 15 and 20 days. Different salinities were achieved by mixing tap water with sea water. We simulated tides during the treatment, by watering the plants every morning and then pumping out the excess water through a 6-in (15 cm) slotted well (constructed of PVC pipe) in the afternoon. From August 20, 2014 to June 30, 2015, all mesocosm communities were flushed with fresh tap water to recover.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2016
A quadrat survey was conducted in October 2016 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2017
A quadrat survey was conducted in October 2017 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
GCE-LTER Altamaha River Plant Community Monitoring Survey in October 2020
A quadrat survey was conducted in October 2020 to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Cover and frequency of biological soil crust community types, moss species, vascular plants, and abiotic land surface features, on gypsum & non-gypsum soils from the Chihuahuan and Mojave Deserts in 2023
This dataset contains raw and calculated percent cover and frequency data for biological soil crust (hereafter biocrust) functional groups, vascular plant functional groups, and abiotic land surface features on and off gypsum soils in the northern Chihuahuan and eastern Mojave Deserts. Abundance data were obtained from 20 study sites total, 10 located on soils derived from gypsum parent material and 10 located on soils derived from non-gypsum parent materials. Sites were grouped into 10 pairs, in which every gypsum site was partnered with a non-gypsum site located in the same region. Apart from soil type, partnered-site characteristics (topography, climate, elevation, slope, aspect, and presence of biocrusts) were held relatively constant. At each site, cover and frequency assessments were made using the line-point intercept method (LPI) and frequency quadrats (1.0 m^2), respectively. Biocrust functional groups included the following crusts: lichen, moss, incipient algal, light algal, dark algal, unknown photosynthetic crust, and vagrant cyanobacteria. Vascular plant categories included: perennial forbs, perennial graminoids, annual forbs, annual graminoids, subshrub, shrub, Yucca, and cacti. Abiotic land surface features included: woody litter, herbaceous litter, bare soil, rock, bedrock, and animal feces. Moss crusts identified within cover and frequency analyses were sampled, and classified to species level via microscopy. The resulting percent cover and frequency data was used to understand differences in biocrust and moss species abundance and diversity on and off gypsum soils; furthermore, how biocrust and moss species abundance was associated with the measured environmental variables. Soil physical and chemical data from this study can be accessed at knb-lter-jrn.210616002. This study and dataset are complete.
warmXtrophic: plant community responses to the individual and interactive effects of climate warming and herbivory across multiple years at Kellogg Biological Station Long-Term Ecological Research Sites (KBS LTER), Michigan, USA, and University of Michigan Biological Station (UMBS), Michigan, USA.
Climate change has both direct and indirect effects on ecological communities. Whereas most climate change ecology experiments manipulate abiotic drivers to measure direct effects of climate on species or communities, fewer quantify the indirect effects through biotic interactions, especially over multiple sites and years. In this factorial experiment we manipulate temperature through open-top chambers, and the level of insect herbivory through insecticide. At two early successional field sites separated by 3 degrees of latitude and 3°C of mean annual temperature (University of Michigan Biological Station, Pellston, MI and Kellogg Biological Station, Hickory Corners, MI), 6 replicate 1-m2 plots per treatment were installed in May 2015. 12 plots per site are at ambient temperature, 12 are warmed with year-round non-UV filtering polycarbonate and wood frame construction OTCs for tall-stature plants (Welshofer et al. 2018 MEE). Insecticide reduces insect herbivory in half the plots (Welshofer et al. 2018 Oecologia). Over the course of the experiment, OTCs warmed the plant communities by 1.9°C-3.0°C on average over the growing season. Each year, through 2021, plant traits and community responses were measured at the species level: plant phenology (green-up, flowering, flowering duration, seed set); plant percent cover (aerial % cover of the 1m2 plot); plant traits (specific leaf area, C and N content), herbivory damage to leaves, and plant species biomass (only in 2021). Further methodological details are found within each response variable metadata. This experiment is ongoing and further data package updates are planned. L0 data is available upon request. R scripts can be found here: https://github.com/SpaCE-Lab-MSU/warmXtrophic. The biotic and abiotic community context and relative strengths of direct vs. indirect effects may yield ecological surprises under climate change unless addressed together. Large-scale experiments like this one can improve our ability to unde
Plant Community and Ecosystem Responses to Long-term Fertilization & Disturbance at the Kellogg Biological Station, Hickory Corners, MI (1989 to 2019)
Dataset AbstractThis work is part of the long-term sampling and monitoring of successional dynamics in abandoned fields – and responses to N-fertilization. Data from this research has been, and will continue to, contribute to LTER cross-site analysis of plant community dynamics, diversity-productivity, and responses to fertilization and disturbance.N-fertilized and tilled (disturbed) microplots are located in the NW corner of all treatment 7 (early successional communities) on the LTER main site. Experimental treatments are: 1) Nitrogen addition vs. no nitrogen addition and 2) Annual disturbance vs. undisturbedoriginal data source http://lter.kbs.msu.edu/datasets/60
NGE01 Chronic Addition of Nitrogen Gradient Experiment (ChANGE): Assessing threshold responses of plant community composition and ecosystem processes at Konza Prairie
Chronic nutrient additions can lead to drastic shifts in the plant community through time, both within tallgrass prairie in other grassland ecosystems worldwide. Nutrient addition experiments have answered many questions about patterns of diversity loss and community shifts; however, the level of nutrients which must be added to cause community shifts is unknown. To date, all nitrogen (N) addition experiments at Konza have added 10 g m-2 (e.g., NutNet Plots; Phosphorus (P) Plots; Belowground Plots), yet current rates of N deposition are one-tenth of that level. Even predicted rates of future N deposition in grasslands are not expected to exceed 5 g m-2 by the year 2050 and will likely be around 2 g m-2 for most of the US. This mismatch begs the question will 10 g/m2 affect grasslands the same way 2 or 5 g m-2 will? There are two main goals for this long-term experiment (1) to identify the nutrient threshold needed to drive plant community change with nutrient additions, and (2) to determine what factors underlie those threshold responses (build up of nutrients, mycorrhizal loss, invertebrate herbivory). Konza ChANGE is part of a multi-site experiment spanning grasslands on two different continents: North America – tallgrass prairie (KNZ) and shortgrass steppe (SGS), and China – three sites in Inner Mongolia. By including multiple grasslands, we expand our ability to make generalizations about how grasslands are affected by N additions, and whether thresholds, if they exist, vary with precipitation, natural nutrient availability, and species identity/composition. Research Questions: (1) Do ecosystems have N tolerance thresholds above which community composition will change, and does that differ between grassland types (i.e. mesic and xeric grasslands)? (2) Does adding a large amount of nutrients in one season result in an equivalent community change as adding a small amount over multiple years? (For example does 5 g m-2 for 6 years create the same community change as
MCR LTER: Coral Reef: Long-term Community Dynamics: Backreef (Lagoon) Corals Annual Survey, ongoing since 2005
This dataset contains the percentage cover of all stony corals (Scleractinia, pooled among genera) and other major groups analyzed from 0.5 x 0.5 m photographic quadrats at the Backreef habitat at the Moorea Coral Reef LTER, French Polynesia. This survey time series began in 2005 and is repeated each year in April. Functional groups counted are: Scleractinian corals, Macroalgae, Crustose Coralline Algae / Bare Space, Soft Corals, Hydrocorals ( Millepora ), Algal Turf and Sand. The coral community was sampled photographically in all represented habitats surrounding the island: Fringing Reef, Lagoon, and Outer Reef. This dataset contains only Lagoon (Backreef) data (see knb-lter-mcr.4 for the other habitats) and is structured in a repeated-measures protocol to allow a statistical contrast of sites, shores and times. Community structure was determined through a coarse analysis of the benthic community, initially completed in situ (2005), but using photoquadrats from 2006. There are quadrats analyzed at each of five areas within each site, and the areas are revisited (but not the quadrats) each year to support the repeated measures design. There are two tables available, providing different views of the same data: a long table having all values in one column and a wide table having a separate column for each observed object. Detailed methods are available in the protocols section.
MCR LTER: Coral Reef: Water Column microbial community data in lagoons of Moorea, French Polynesia
Microbes process a significant fraction of organic material in marine systems, and the composition and activity of their communities are strongly modulated by fluctuations in nutrient availability. To investigate the distribution and dynamics of microbial communities in tropical lagoon ecosystems, bacteria and archaea were quantified from water column samples collected in lagoons around Moorea, French Polynesia during May 2021, April 2022, and April 2023 using eDNA sequencing. Environmental DNA was extracted and sequenced to assess microbial community composition, with data processed using the QIIME 2 platform (version 2023.7). Microbial communities in fringing reef habitats differed from those in mid-lagoon and back reef sites. These differences in microbial communities were related to patterns of water column nutrients and fluorescent dissolved organic matter, providing a baseline for understanding how lagoon microbial communities respond to spatial and temporal variability in reef environments.
MCR LTER: Coral Reef: Rates of benthic coral reef community metabolism from 2007 ongoing
Rates of community primary production and respiration can be calculated from the data presented here. For two sites on the north shore of Moorea, these measurements are sampled upstream and downstream: dissolved oxygen, water column velocity (speed and direction), in situ light (PAR) levels, incident solar radiation, temperature, wind speed, and transect length. Estimates are made yearly across approximately 160 m of the backreef community. This material uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2024).
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Corals, ongoing since 2005
This dataset contains the percentage cover of the stony corals (Scleractinia) and other major groups analyzed from 0.5 x 0.5 m photographic quadrats in several reef habitats at the Moorea Coral Reef LTER, French Polynesia. This survey has been repeated annually in April since 2005. There are two tables available, providing different views of the same data: a long table having all values in one column and a wide table having a separate column for each dependent variable. Functional groups (i.e., dependent variables) counted are: Scleractinian Corals (by genus where appropriate, see methods), Macroalgae, Crustose Coralline Algae / Bare Space, Soft Corals, Hydrocorals (Millepora), Algal Turf, and Sand. The coral community was sampled photographically in all habitats surrounding the island: Fringing Reef, Lagoon (Backreef), and Outer Reef (Forereef.) The sampling regime consists of a repeated-measures protocol in each habitat and is structured by habitat to allow a statistical contrast of sites, shores, times, and in the case of the outer reef, depths. Detailed methods are available in the protocols section.
MCR LTER: Coral Reef: Coral Community Dynamics: Coral Recruitment
These data describe the recruitment of scleractinian corals to unglazed terracotta tiles secured independently to horizontal reef surfaces. The tiles are positioned horizontally to create a cryptic habitat beneath (approximately 1 cm high) and are in place approximately 6 months at a time; they are replaced ca. January and September. The tiles are bleached and inspected for coral skeletons using a dissecting microscope. Coral recruits are resolved to three families (Poritidae, Acroporidae, Pocilloporidae, and "others") and are scored on upper, lower and side surfaces. Data are available for the back reef (2006-present) and outer reef (2007-present).
MCR LTER: Coral Reef: Asynchrony in coral community structure contributes to reef‑scale community stability, data for Srednick et al., Nature 2023
These data were generated in support of the manuscript: Srednick G, Davis K, and Edmunds P, Nature To evaluate whether spatial insurance effects are important on coral reefs, we explored variation over 2006–2019 in coral community structure and environmental conditions in Moorea, French Polynesia. We studied coral community structure at a single site with fringing, back reef, and fore reef habitats, and used this system to explore associations among community asynchrony, asynchrony of environmental conditions, and community stability. The daily range in seawater temperature among habitats suggests it could be a factor contributing to the variation in coral community structure. Wave-forced seawater flow facilitated larval exchange among connected habitats, differing in strength among years, and accentuated periodic connectivity among habitats at 1-7 year intervals. At this site, connected habitats harboring taxonomically similar coral assemblages and exhibiting asynchronous population dynamics can provide insurance against extirpation and may promote community stability. If these effects apply at larger spatial scale, then among-habitat community asynchrony is likely to play an important role in determining reef-wide coral community resilience. This manuscript uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2023).
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005
These data describe the estimated species abundances and individual sizes of fishes surveyed in late July or early August of each year by researchers associated with the Moorea Coral Reef Long Term Ecological Research site. This study began in 2005, and the dataset is updated annually. Divers using SCUBA estimate the number and total length (total body length to the greatest precision possible) of all mobile and semi-cryptic fishes observed on four 50m long transects within each of the three principal habitat types, fore reef, back reef, and fringing reef, found around Moorea. These three habitats are each surveyed at six permanently marked sites, two sites on each of Moorea's three shores, yielding a total of 18 unique habitats (3) by location (6) combinations and 72 transects. Estimated total lengths are converted to estimates of species biomass using published length-weight relationships for each species. Data from the initial survey conducted in 2005 are presented in a separate data table as the protocol used in 2005 differed from the standard protocol adopted in 2006, and no estimates of fish body lengths were made in 2005. These data are a component of the MCR LTER core time series program and provide insight into the spatial and temporal patterns of reef fish abundance and biomass around the island of Moorea, French Polynesia.
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