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124
datasets available to search
ShareScore release 0.9.0
Dataset results
124 results for “de novo genome”
Flanking sequence preference modulates de novo DNA methylation in the mouse genome
GEO Series GSE151992. Mus musculus. 6 samples. Type: Methylation profiling by high throughput sequencing.
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [miRNA-seq]
GEO Series GSE93519. Homo sapiens. 32 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Biphasic euchromatin-to-heterochromatin transition on the KSHV genome following de novo infection
GEO Series GSE51660. Homo sapiens; Human herpesvirus 8 type M. 16 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [methylation]
GEO Series GSE91375. Homo sapiens. 60 samples. Type: Methylation profiling by genome tiling array.
Genome-wide identification of distinct target loci for de novo DNA methylation by DNMT3A and DNMT3B during mammalian development
GEO Series GSE111172. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
De Novo Genome Assembly of Guinea Grass Exposed to Elevated CO2 and Temperature
GEO Series GSE122194. Megathyrsus maximus. 33 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide transcriptome profiling reveals the functional impact of rare de novo and recurrent CNVs in autism spectrum disorders.
GEO Series GSE37772. Homo sapiens. 439 samples. Type: Expression profiling by array.
De novo methylaton of the unmethylated K. phaffii genome by human DNA methyltransferases (DNMTs) [RNA-seq]
GEO Series GSE139060. Komagataella phaffii. 39 samples. Type: Expression profiling by high throughput sequencing.
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [H3k27me3 ChIP-Seq]
GEO Series GSE92558. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De novo mutations in the genome organizer CTCF cause Intellectual Disability (RNA-Seq)
GEO Series GSE46831. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
De novo mutations in the genome organizer CTCF cause Intellectual Disability (ChIP-Seq)
GEO Series GSE46832. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De novo assembly of the polyhydroxybutyrate (PHB) producer Azohydromonas lata strain H1 (Pelleroni and Pelleroni, 1978) genome and genomic analysis of PHB production machinery
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Data from: Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence
Deep sequencing analyses have shown that a large fraction of genomes is transcribed, but the significance of this transcription is much debated. Here, we characterize the phylogenetic turnover of poly-adenylated transcripts in a comprehensive sampling of taxa of the mouse (genus Mus), spanning a phylogenetic distance of 10 Myr. Using deep RNA sequencing we find that at a given sequencing depth transcriptome coverage becomes saturated within a taxon, but keeps extending when compared between taxa, even at this very shallow phylogenetic level. Our data show a high turnover of transcriptional states between taxa and that no major transcript-free islands exist across evolutionary time. This suggests that the entire genome can be transcribed into poly-adenylated RNA when viewed at an evolutionary time scale. We conclude that any part of the non-coding genome can potentially become subject to evolutionary functionalization via de novo gene evolution within relatively short evolutionary time spans.
CPX-351 vs Intensive Chemotherapy in Patients With de Novo Intermediate or Adverse Risk AML Stratified by Genomics
ClinicalTrials.gov study NCT05260528. IPD Sharing: Not stated. Countries: 1. Publications: 0.
HP1 drives de novo 3D genome reorganization in early Drosophila embryos (RNA-seq)
GEO Series GSE140541. Drosophila melanogaster. 7 samples. Type: Expression profiling by high throughput sequencing.
De novo methylaton of the unmethylated K. phaffii genome by human DNA methyltransferases (DNMTs) [BiSulfite-seq]
GEO Series GSE139062. Komagataella phaffii. 26 samples. Type: Methylation profiling by high throughput sequencing.
Data from: Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence
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Data from: De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
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de novo re-construction of the core genome from ChIP-Seq for large-genome organisms
GEO Series GSE107827. Oryza sativa; Triticum aestivum; Oryza sativa Japonica Group; Oryza sativa Indica Group. 26 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
HP1 drives de novo 3D genome reorganization in early Drosophila embryos (HiC)
GEO Series GSE140540. Drosophila melanogaster. 23 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.