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131
datasets available to search
ShareScore release 0.7.1
Dataset results
131 results for “genetic loci”
Data from: Genetic drift outweighs natural selection at toll-like receptor (TLR) immunity loci in a reintroduced population of a threatened species
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Data from: Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants
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Data from: The loci of repeated evolution: a catalogue of genetic hotspots of phenotypic variation
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Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Agilent]
GEO Series GSE25935. Homo sapiens. 464 samples. Type: Expression profiling by array.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [scRNA-seq]
GEO Series GSE285461. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Illumina Expression Array]
GEO Series GSE28893. Homo sapiens. 60 samples. Type: Expression profiling by array.
Identifying genetic loci and spleen gene coexpression networks driving immunophenotypes in the BXD panel
GEO Series GSE19935. Mus musculus. 38 samples. Type: Expression profiling by array.
Genome-wide association studies identify novel genetic loci for epigenetic age acceleration among survivors of childhood cancer [Metadata_SJLIFE2_502]
GEO Series GSE197675. Homo sapiens. 502 samples. Type: Methylation profiling by genome tiling array.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1
GEO Series GSE286226. Homo sapiens. 59 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Dissecting the Genetics of the Human Transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
GEO Series GSE65907. Homo sapiens. 2112 samples. Type: Expression profiling by array.
Genetic loci that regulate healing and regeneration in LG/J and SM/J mice
GEO Series GSE17168. Mus musculus. 12 samples. Type: Expression profiling by array.
Genetic Loci that Regulate Ectopic Calcification in Response to Knee Trauma in LG/J by SM/J Advanced Intercross Mice
GEO Series GSE64793. Mus musculus. 38 samples. Type: Other.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [scMulti]
GEO Series GSE286205. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Illumina SNP array]
GEO Series GSE26105. Homo sapiens. 224 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Genome-wide association studies identify novel genetic loci for epigenetic age acceleration among survivors of childhood cancer [Metadata_SJLIFE_controls_282]
GEO Series GSE197676. Homo sapiens. 282 samples. Type: Methylation profiling by genome tiling array.
Multi-ancestry genetic analysis of gene regulation in coronary artery prioritizes disease risk loci
GEO Series GSE225650. Homo sapiens. 138 samples. Type: Expression profiling by high throughput sequencing.
Functional genomics in primary T cells and monocytes identifies mechanisms by which genetic susceptibility loci influence systemic sclerosis risk
GEO Series GSE212100. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [4C]
GEO Series GSE285760. Homo sapiens. 3 samples. Type: Other.
Chromatin looping links target genes with genetic risk loci for dermatological traits
GEO Series GSE151193. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Data from: Genetic identification of Iberian rodent species using both mitochondrial and nuclear loci: application to non-invasive sampling
Species identification through non-invasive sampling is increasingly used in animal conservation genetics, given that it obviates the need to handle free-living individuals. Non-invasive sampling is particularly valuable for elusive and small species such as rodents. Although rodents are not usually assumed to be the most obvious target for conservation, of the 21 species or near-species present in Iberia, three are considered endangered and declining while several others are poorly studied. Here we develop a genetic tool for identifying all rodent species in Iberia by non-invasive genetic sampling. To achieve this purpose we selected one mitochondrial gene (cytochrome b – cyt-b) and one nuclear gene (interphotoreceptor retinoid-binding protein – IRBP), which we first sequenced using tissue samples. Both genes allow for the phylogenetic distinction of all species except the sibling species Microtus lusitanicus and M. duodecimcostatus. Overall, cyt-b showed higher resolution than IRBP, revealing a clear barcoding gap. To allow these markers to be applied to non-invasive samples, we selected a short highly-diagnostic fragment from each gene, which we used to obtain sequences from faeces and bones from owl pellets. Amplification success for the cyt-b and IRBP fragment was 85% and 43% in faecal and 88% and 64% in owl-pellet DNA extractions, respectively. The method allows the unambiguous identification of the great majority of Iberian rodent species from non-invasive samples, with application in studies of distribution, spatial ecology and population dynamics, and for conservation.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.