Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
150
datasets available to search
ShareScore release 0.9.0
Dataset results
150 results for “host microbiome”
Impact of preoperative antibiotics on integrated microbiome-host transcriptomic data generated from colorectal cancer resections.
GEO Series GSE165255. Homo sapiens. 172 samples. Type: Expression profiling by high throughput sequencing; Other.
The soil microbiome reduces Striga infection in sorghum by modulation of host-derived signaling molecules and root development
GEO Series GSE216351. Sorghum bicolor. 31 samples. Type: Expression profiling by high throughput sequencing.
Multi-omics association reveals the effects of intestinal microbiome-host interactions on fat deposition in broiler lines divergently selected for abdominal fat content
GEO Series GSE179459. Gallus gallus. 80 samples. Type: Expression profiling by high throughput sequencing.
Distinct cervical tissue-adherent and luminal microbiome communities correlate with mucosal host gene expression and protein levels in Kenyan sex workers
GEO Series GSE194276. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Tissue-specific reprogramming of host tRNA transcriptome by the microbiome
GEO Series GSE150355. Mus musculus. 48 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The absolute gut microbiome alters host physiology, varies by gut architecture and disease, and predicts response to therapy
GEO Series GSE104871. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis
GEO Series GSE120192. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Epithelium intrinsic zinc sensing maintains host-microbiome symbiosis via modulation of Tuft and Paneth cell lineages [rna-seq_mtf_ko_sio_zn]
GEO Series GSE284341. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [16s rRNA gene V4 region]
GEO Series GSE126900. human metagenome. 34 samples. Type: Other.
Transcriptome-wide mapping of host mRNA m6A modification to decipher the role of gut microbiome
GEO Series GSE120262. Mus musculus. 46 samples. Type: Other.
Dietary fiber inulin enables intestinal microbiome to clear fructose and protect the host
GEO Series GSE268945. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Metabolic modeling reveals the aging-associated decline of host-microbiome metabolic interactions in mice
GEO Series GSE278548. Mus musculus. 119 samples. Type: Expression profiling by high throughput sequencing.
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [human host RNA-seq]
GEO Series GSE114588. Homo sapiens. 56 samples. Type: Expression profiling by high throughput sequencing.
Epithelium intrinsic zinc sensing maintains host-microbiome symbiosis via modulation of Tuft and Paneth cell lineages [rna-seq_mtf_ko_si]
GEO Series GSE284340. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa
GEO Series GSE300112. Homo sapiens. 12 samples. Type: Other.
Mannose alters gut microbiome, prevents diet induced obesity and improves host metabolism
GEO Series GSE110796. Mus musculus. 13 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
The microbiome buffers tadpole hosts from heat stress: a hologenomic approach to understand host-microbe interactions under warming
GEO Series GSE208645. Lithobates clamitans. 20 samples. Type: Expression profiling by high throughput sequencing.
Metabolic products of an obesity-associated microbiome impact host metabolism and disease risk by altering the epigenome
GEO Series GSE99670. Mus musculus. 84 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Multi-omics analysis revealing the interplay between gut microbiome and the host following opioid use [RNA-seq]
GEO Series GSE230095. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq]
GEO Series GSE126901. human metagenome. 35 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.