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213
datasets available to search
ShareScore release 0.9.0
Dataset results
213 results for “in vitro cultures”
Transcriptomic analysis of in vitro cultured horizontal basal cells of the murine olfactory epithelium
GEO Series GSE103577. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Comparative gene expression profiling of the three main types of mouse dendritic cells isolated ex vivo from the spleen versus generated in vitro in bone marrow FLT3-L cultures
GEO Series GSE121859. Mus musculus. 8 samples. Type: Expression profiling by array; Third-party reanalysis.
Transcriptome comparison of oocytes obtained from in vitro culture and in vivo
GEO Series GSE68150. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomics and metabolomics reveal the changes of regulatory mechanisms of osteosarcoma under different culture methods in vitro
GEO Series GSE201050. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Effect of HES6 knockdown on gene expression in vitro differentiated megakaryocytes, erythroblasts and precursor cells, cultured from CB CD34+ HSPCs.
GEO Series GSE229196. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic drift during long-term culture of cells in vitro [4C]
GEO Series GSE165603. Homo sapiens. 16 samples. Type: Other.
RNA-seq using mouse one-day old (P1) cortical neurons cultured two-days in vitro (2DIV)
GEO Series GSE180135. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Characterization of shear stress response of in vitro cultured human dermal lymphatic endothelial cells [RNA-Seq]
GEO Series GSE281405. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Comparison of otic vesicle gene expression from E10.5 mouse and inner ear organoid cultures at 12 days-in-vitro with (BSFL) and without (BFL) TGFβ inhibition
GEO Series GSE285576. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
in vitro murine iBC culture
GEO Series GSE211994. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Impact of culture conditions used in in-vitro bovine production on embryo development and trophoblast gene expression.
GEO Series GSE297748. Bos taurus. 11 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing from in vitro cultured OSCC cells
GEO Series GSE169423. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic drift during long-term culture of cells in vitro
GEO Series GSE116375. Homo sapiens. 16 samples. Type: Methylation profiling by genome tiling array.
In vitro culture of cynomolgus monkey embryos beyond gastrulation
GEO Series GSE130114. Macaca fascicularis. 21 samples. Type: Expression profiling by high throughput sequencing.
Dynamic, IPSC-derived Hepatic Tissue Tri-Culture System for the Evaluation of Liver Physiology in vitro
<p>This repository is related to the research article entitled "Dynamic, IPSC-derived Hepatic Tissue Tri-Culture System for the Evaluation of Liver Physiology in vitro" by Benedikt Scheidecker <em>et al</em> 2024 <em>Biofabrication</em> 16 025037. DOI 10.1088/1758-5090/ad30c5.</p> <p>The dataset contains raw RNA sequencing data (FASTQ files generated by paired-end Illumina sequencing of nanoCAGE and Chromium Single Cell 3' Gene Expression libraries) and processed nanoCAGE data files (demultiplexed FASTQ files and sequence alignments in the BED12 file format) produced by the CAGEscan Nextflow pipeline (please see https://gitlab.com/mcfrith/cagescan-pipeline and https://github.com/oist/plessy_CAGEscan_Nextflow for usage details). The nanoCAGE gene expression table (nanoCAGE_exp_table_genes_hg38.csv) was created from BED12 files using the "CAGEr" software package available from Bioconductor. Single cell sequencing data were processed with the dedicated Cell Ranger pipeline available from 10x Genomics.</p> <p> </p> <p> </p> <p> </p>
Figure 1 from: Shkondrov A, Popova P, Ionkova I, Krasteva I (2021) Flavonoids in in vitro cultures of Astragalus hamosus. Pharmacia 68(4): 927-931. https://doi.org/10.3897/pharmacia.68.e76460
Figure 1 Shoot culture of A. hamosus.
Figure 2 from: Shkondrov A, Popova P, Ionkova I, Krasteva I (2021) Flavonoids in in vitro cultures of Astragalus hamosus. Pharmacia 68(4): 927-931. https://doi.org/10.3897/pharmacia.68.e76460
Figure 2 Callus culture of A. hamosus.
Figure 3 from: Popova P, Zarev Y, Shkondrov A, Krasteva I, Ionkova I (2022) In vitro production of flavonoids in cultures of Gypsophila glomerata. Pharmacia 69(1): 107-111. https://doi.org/10.3897/pharmacia.69.e77769
Figure 3 Differentiated content of flavonols.
Figure 2 from: Popova P, Zarev Y, Shkondrov A, Krasteva I, Ionkova I (2022) In vitro production of flavonoids in cultures of Gypsophila glomerata. Pharmacia 69(1): 107-111. https://doi.org/10.3897/pharmacia.69.e77769
Figure 2 Total flavonoids in the cultures.
Figure 4 from: Popova P, Zarev Y, Shkondrov A, Krasteva I, Ionkova I (2022) In vitro production of flavonoids in cultures of Gypsophila glomerata. Pharmacia 69(1): 107-111. https://doi.org/10.3897/pharmacia.69.e77769
Figure 4 Saponarin content in the in vitro cultures.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.