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dryad36/100

For the people by the people: citizen science web interface for real-time monitoring of tick risk areas in Finland

<p>Ticks and tick-borne diseases (TBDs) form a significant and growing threat to human health and well-being in Europe, with increasing numbers of tick-borne encephalitis (TBE) and Lyme borreliosis cases being reported during the past few decades. Increasing knowledge of tick risk areas and seasonal activity remains the primary method for preventing TBDs. Crowdsourcing provides the best alternative for rapidly obtaining data on tick occurrence on a national level.</p> <p>In order to produce and share up-to-date data about tick risk areas in Finland, an online platform, Punkkilive (www.punkkilive.fi/en), was launched in April 2021. On the website, users can submit and browse tick observations, report tick numbers and hosts, and upload pictures of ticks.</p> <p>Here, we looked at trends in the crowdsourced data from 2021, assessed the effect of local tick species on seasonality of observations, and examined sampling bias in the data.</p> <p>The high number of tick observations (n=78 837) highlights that there was demand for such a service. Approximately 97% of 5573 uploaded pictures represented ticks. Seasonal patterns of tick observations varied across Finland, highlighting variability in the risk associated with the two human-biting tick species <em>Ixodes ricinus</em> and <em>I. persulcatus</em>, the latter having a shorter, unimodal activity peak in late spring–early summer. Tick numbers were low and the proportion of new sightings was high in northern Finland, as may be expected near the latitudinal distribution limits of both species. While the number of inhabitants generally explained the number of tick observations well, geographically weighted regression models also identified areas that deviated from this general pattern.</p> <p>This study offers a prime example of how crowdsourcing can be applied to track vectors of zoonotic diseases, to the benefit of both researchers and the public. Areas with more or fewer observations than predicted based on number of inhabitants were revealed, wherein more specific analyses may reveal factors contributing to lower or higher risk levels that may be used in increasing awareness. We hope that the success of Punkkilive serves to highlight the usefulness of citizen science in the prevention of vector-borne diseases.</p>

opencc-zeroNov 2023View details →
zenodo36/100

GNSS-IR data for "Real-time water levels using GNSS-IR: a potential tool for flood monitoring"

<p>Organised SNR data used for GNSS-IR analysis in the article "Real-time water levels using GNSS-IR: a potential tool for flood monitoring" by David Purnell, Natalya Gomez, William Minarik and Gregory Langston.</p><p>&nbsp;</p><p>The directories 'rv3s' and 'sjdlr' contain SNR data corresponding to sites Trois-Rivières and Saint-Joseph-de-la-Rive, respectively.</p><p>&nbsp;</p><p>Software for processing the data can be found at: https://github.com/purnelldj/gnssir_rt</p><p>&nbsp;</p><p>SNR data is given as text files in the format specified here except for columns 4+:</p><p>https://gnssrefl.readthedocs.io/en/latest/pages/file_structure.html#the-snr-data-format</p><p>columns:</p><p>1. sat PRN with an offset such that GLONASS satellites are between 100-200 and Galileo are between 200-300</p><p>2. satellite elevation (degrees)</p><p>3. azi is satellite azimuth (degrees)</p><p>4. GPS time (seconds since 1980)</p><p>5. L1 SNR</p>

opencc-by-4.0Jul 2023View details →
zenodo36/100

Real-time influence of intracellular acidification and Na+/H+ exchanger inhibition on in-cell pyruvate metabolism in the perfused mouse heart: A 31P-NMR and hyperpolarized 13C-NMR study

<p>This dataset contains primary data for DOI: 10.1002/nbm.4993</p> <p>NMR in Biomedicine. 2023; 10;e4993</p> <p>Title: Real-time influence of intracellular acidification and Na+/H+ exchanger inhibition on in-cell pyruvate metabolism in the perfused mouse heart: A 31P-NMR and hyperpolarized 13C-NMR study</p> <p>Authors: David Shaul, Naama Lev-Cohain, Gal Sapir, Jacob Sosna, J. Moshe Gomori, Leo Joskowicz, Rachel Katz-Brull</p> <p>&nbsp;</p> <p>Description:</p> <p>These primary datasets contains data presented in the above publication and consist of 31P- (at thermal equilibrium) and hyperpolarized 13C-NMR spectra.&nbsp;</p> <p>Please consult the Archive Guide.</p>

opencc-by-4.0Oct 2023View details →
zenodo36/100

[Data] Real-time monitoring and quality assurance for laser-based directed energy deposition: integrating co-axial imaging and self-supervised deep learning framework

<p>The experimental setup utilized a co-axial color Charged Couple Device (CCD) camera, integrated into the laser deposition head. This camera operates at a frame rate of 30 frames per second and captures the morphology of the process area. The captured images consist of three RGB channels with a 640&thinsp;&times;&thinsp;480 pixels resolution. To enable the camera to capture the radiation from the process zone, a beam splitter is installed on Precitec's laser applicator head. An optical notch filter within the 650&ndash;675 nm range also blocks the laser wavelengths.</p> <p>The dataset consists of four categories that covers the process map of DED process [.rar file].<br>The dataset consist of around 48,000 images that are labelled into 4 categories [P1-P2-P3-P4]. The images correspond to DED process zone captured co-axially<br>The categories are function of linear laser energy deposited. The folder is already split into Train and Test.</p>

opencc-by-4.0Dec 2023View details →
zenodo36/100

Source data for graphs and charts used in the paper "A machine learning-based estimator for real-time earthquake ground-shaking predictions in Southern California"

<h1>DESCRIPTION:</h1> <h3>This repository contains the source data for graphs and charts used in the paper "A machine learning-based estimator for real-time earthquake ground-shaking predictions in Southern California" submitted and accepted at "Communications Earth &amp; Environment journal"&nbsp;</h3> <h3>Marisol Monterrubio-Velasco, Scott Callaghan, David Modesto, Jose Carlos Carrasco, Rosa M. Badi , Pablo Pallares, Fernando V&aacute;zquez-Novoa, Enrique S. Quintana-Ortı́, Marta Pienkowska, and Josep de la Puente</h3> <h2><strong>DATA FOR FIGURES:&nbsp;</strong></h2> <h3><strong>Figure 1 :&nbsp;</strong></h3> <p>The data used in this figure comes from the CyberShake Study 15.4.&nbsp; Seismogram, intensity measure, and duration data from CyberShake Study 15.4 is available through the SCEC CyberShake Study 15.4 Globus Collection, served by the University of Southern California's Center for Advanced Research Computing.&nbsp; Direct link:<a href="https://g-46eaba.a78b8.36fe.data.globus.org/ACTN/3886/PeakVals_ACTN_10_0.bsa">https://g-46eaba.a78b8.36fe.data.globus.org</a>."</p> <h3><strong>Figure 2:</strong></h3> <p><strong>Model evaluation on the validation dataset for T = 2s</strong></p> <p>1. Random Forest predictions using the optimized hyperparameters depth=30, n_estimators=30 for the validation dataset at T=2s</p> <p><a href="../records/10640493/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10.dat?download=1&amp;preview=1">y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10.dat</a></p> <p>2. Artificial Neural Network predictions using the optimized hyperparameters 9layer and 256 neurons for the validation dataset at T=2s</p> <p><a href="../api/records/10640493/draft/files/Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period2.0_ALL_Validation_log10.csv/content" target="_blank" rel="noopener noreferrer">Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period2.0_ALL_Validation_log10.csv</a></p> <p>3. True values for the validation dataset at T=2s</p> <p><a href="../records/10640493/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10.dat?download=1&amp;preview=1">y_true_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10.dat</a></p> <h3><strong>Figure 3:</strong></h3> <p><strong>Error metrics obtained for each simulated scenario using:</strong></p> <p><strong>- Artificial Neural Networks</strong></p> <p><a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_2.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_3.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_5.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_10.0_NN.csv</a></p> <p><strong>- Random Forest regressor</strong></p> <p><a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_2.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_3.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_5.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_10.0_RF.csv</a></p> <p><strong>- ASK14 GMPE</strong></p> <p><a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_2.0_GMPE.csv</a>, <a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_3.0_GMPE.csv</a>,&nbsp;<a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_5.0_GMPE.csv, </a><a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_10.0_GMPE.csv</a></p> <h3>Figure 4:</h3> <p><strong>MLESmap RotD50 predictions on a validation event of magnitude 6.85</strong></p> <p><a href="../api/records/10640493/draft/files/RF_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">RF_predictions_T2s_map_2748.csv,&nbsp; </a><a href="../api/records/10640493/draft/files/ASK_14_prediction_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ASK_14_prediction_T2s_map_2748.csv </a>,&nbsp;<a href="../api/records/10640493/draft/files/ANN_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ANN_predictions_T2s_map_2748.csv</a></p> <p><a href="../api/records/10640493/draft/files/RF_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">RF_predictions_T3s_map_2748.csv,&nbsp; </a><a href="../api/records/10640493/draft/files/ASK_14_prediction_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ASK_14_prediction_T3s_map_2748.csv </a>,&nbsp;<a href="../api/records/10640493/draft/files/ANN_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ANN_predictions_T3s_map_2748.csv</a></p> <p><a href="../api/records/10640493/draft/files/RF_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">RF_predictions_T5s_map_2748.csv,&nbsp; </a><a href="../api/records/10640493/draft/files/ASK_14_prediction_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ASK_14_prediction_T5s_map_2748.csv </a>,&nbsp;<a href="../api/records/10640493/draft/files/ANN_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ANN_predictions_T5s_map_2748.csv</a></p> <p><a href="../api/records/10640493/draft/files/RF_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">RF_predictions_T10s_map_2748.csv,&nbsp; </a><a href="../api/records/10640493/draft/files/ASK_14_prediction_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ASK_14_prediction_T10s_map_2748.csv&nbsp;</a>,&nbsp;<a href="../api/records/10640493/draft/files/ANN_predictions_T10s_map_2748.csv/content" target="_blank" rel="noopener noreferrer">ANN_predictions_T10s_map_2748.csv</a></p> <h3>Figure 5:</h3> <p><strong>Spatial configuration of five historical earthquakes and BBP stations also including the coordinates of synthetic stations&nbsp; from the CS_15_4 study</strong></p> <p><a href="../api/records/10640493/draft/files/SyntheticStationsCoordinates_CS_15.4.csv/content" target="_blank" rel="noopener noreferrer">SyntheticStationsCoordinates_CS_15.4.csv, </a><a href="../api/records/10640493/draft/files/Whittier_BBP_sites.csv/content" target="_blank" rel="noopener noreferrer">Whittier_BBP_sites.csv</a>, <a href="../api/records/10640493/draft/files/Northridge_BBP_sites.csv/content" target="_blank" rel="noopener noreferrer">Northridge_BBP_sites.csv</a>, <a href="../api/records/10640493/draft/files/North_Palm_Springs_BBP_sites.csv/content" target="_blank" rel="noopener noreferrer">North_Palm_Springs_BBP_sites.csv</a>,&nbsp;<a href="../api/records/10640493/draft/files/Landers_BBP_sites.csv/content" target="_blank" rel="noopener noreferrer">Landers_BBP_sites.csv</a>,&nbsp;<a href="../api/records/10640493/draft/files/Hector_Mine_BBP_sites.csv/content" target="_blank" rel="noopener noreferrer">Hector_Mine_BBP_sites.csv</a></p> <h3><strong>Figure 6:</strong></h3> <p><strong>RotD50 predictions for real events for the &lsquo;inside&rsquo; stations&nbsp;</strong></p> <p>NN_layers9North_Palm_Springs_IN_event_metrics-T_10.csv, NN_layers9Northridge_IN_event_metrics-T_10.csv, NN_layers9Landers_IN_event_metrics-T_10.csv, NN_layers9Hector_Mine_IN_event_metrics-T_10.csv, <a href="../api/records/10640493/draft/files/NN_layers9Whittier_IN_event_metrics-T_2.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Whittier_IN_event_metrics-T_10.csv</a></p> <p>NN_layers9North_Palm_Springs_IN_event_metrics-T_5.csv, NN_layers9Northridge_IN_event_metrics-T_5.csv, NN_layers9Landers_IN_event_metrics-T_5.csv, NN_layers9Hector_Mine_IN_event_metrics-T_5.csv,&nbsp;<a href="../api/records/10640493/draft/files/NN_layers9Whittier_IN_event_metrics-T_2.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Whittier_IN_event_metrics-T_5.csv</a></p> <p>NN_layers9North_Palm_Springs_IN_event_metrics-T_3.csv, NN_layers9Northridge_IN_event_metrics-T_3.csv, NN_layers9Landers_IN_event_metrics-T_3.csv, NN_layers9Hector_Mine_IN_event_metrics-T_3.csv, <a href="../api/records/10640493/draft/files/NN_layers9Whittier_IN_event_metrics-T_2.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Whittier_IN_event_metrics-T_3.csv</a></p> <p>NN_layers9North_Palm_Springs_IN_event_metrics-T_2.csv, NN_layers9Northridge_IN_event_metrics-T_2.csv, NN_layers9Landers_IN_event_metrics-T_2.csv, NN_layers9Hector_Mine_IN_event_metrics-T_2.csv, <a href="../api/records/10640493/draft/files/NN_layers9Whittier_IN_event_metrics-T_2.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Whittier_IN_event_metrics-T_2.csv</a></p> <h2>Supplementary material:</h2> <h3>Supplementary Fig 2</h3> <p><strong>Boxplots comparing ML models and "true" values</strong></p> <p><strong>-&nbsp; DNN</strong></p> <p><a href="10640493" target="_blank" rel="noopener noreferrer">Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period2.0_ALL_Validation_log10.csv</a></p> <p><a href="10640493" target="_blank" rel="noopener noreferrer">Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period3.0_ALL_Validation_log10.csv</a></p> <p><a href="10640493" target="_blank" rel="noopener noreferrer">Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period5.0_ALL_Validation_log10.csv</a></p> <p><a href="10640493" target="_blank" rel="noopener noreferrer">Prediction_NN_BS_256_9capas_DataSet_AllRuptureVariations_OneRuptureID_Period10.0_ALL_Validation_log10.csv</a></p> <p>- RF</p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_pred_dislib_T3s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_pred_dislib_T5s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y</a><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">_pred_dislib_T10s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p>- TRUE VALUES FROM CYBERSHAKE SIMULATIONS</p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_true_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_true_dislib_T3s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_true_dislib_T5s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p><a href="../api/records/10640493/draft/files/y_pred_dislib_T2s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat/content" target="_blank" rel="noopener noreferrer">y_true_dislib_T10s_depth-30_n_estimators-30_val_MODEL_ORIGINAL_Dataset_ORIGINAL_ALL_log10_8Feat_Plus_RealData.dat</a></p> <p>&nbsp;</p> <h3>Supplementary Fig 3</h3> <p><strong>Error metrics obtained for each simulated scenario:</strong></p> <p><strong>Artificial Neural Networks:</strong></p> <p><a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_2.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_3.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_5.0_NN.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_10.0_NN.csv</a></p> <p><strong>&nbsp;Random Forest regressor:</strong></p> <p><a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_2.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_3.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_5.0_RF.csv</a>, <a href="../api/records/10640493/draft/files/Test_Results_metrics_paper_5.0_NN.csv/content" target="_blank" rel="noopener noreferrer">Test_Results_metrics_paper_10.0_RF.csv</a></p> <p><strong>ASK14 GMPE</strong></p> <p><a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_2.0_GMPE.csv</a>, <a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_3.0_GMPE.csv</a>,&nbsp;<a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_5.0_GMPE.csv, </a><a href="../api/records/10640493/draft/files/Results_metrics_paper_3.0_GMPE.csv/content" target="_blank" rel="noopener noreferrer">Results_metrics_paper_10.0_GMPE.csv</a></p> <h3>Supplementary Fig 4</h3> <p><strong>Predictions for the Synthetic event of magnitude 7.45</strong></p> <p>RF_predictions_T2s_map_3.csv, &nbsp;ASK_14_prediction_T2s_map_3.csv , ANN_predictions_T2s_map_3.csv</p> <p>RF_predictions_T3s_map_3.csv, &nbsp;ASK_14_prediction_T3s_map_3.csv , ANN_predictions_T3s_map_3.csv</p> <p>RF_predictions_T5s_map_3.csv, &nbsp;ASK_14_prediction_T5s_map_3.csv , ANN_predictions_T5s_map_3.csv</p> <p>RF_predictions_T10s_map_3.csv, &nbsp;ASK_14_prediction_T10s_map_3.csv , ANN_predictions_T10s_map_3.csv</p> <h3>Supplementary Fig 5</h3> <p><strong>Predictions for the Synthetic event of magnitude 8.05</strong></p> <p>RF_predictions_T2s_map_1240.csv, &nbsp;ASK_14_prediction_T2s_map_1240.csv , ANN_predictions_T2s_map_1240.csv</p> <p>RF_predictions_T1240s_map_1240.csv, &nbsp;ASK_14_prediction_T1240s_map_1240.csv , ANN_predictions_T1240s_map_1240.csv</p> <p>RF_predictions_T5s_map_1240.csv, &nbsp;ASK_14_prediction_T5s_map_1240.csv , ANN_predictions_T5s_map_1240.csv</p> <p>RF_predictions_T10s_map_1240.csv, &nbsp;ASK_14_prediction_T10s_map_1240.csv , ANN_predictions_T10s_map_1240.csv</p> <h3>Supplementary Fig 6</h3> <p><a href="../api/records/10640493/draft/files/NN_layers9North_Palm_Springs_OUT_event_metrics-T_10.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9North_Palm_Springs_OUT_event_metrics-T_10.csv</a>, <a href="../api/records/10640493/draft/files/NN_layers9North_Palm_Springs_OUT_event_metrics-T_10.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Northridge_OUT_event_metrics-T_10.csv</a>, <a href="../api/records/10640493/draft/files/NN_layers9North_Palm_Springs_OUT_event_metrics-T_10.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Landers_OUT_event_metrics-T_10.csv</a>, <a href="../api/records/10640493/draft/files/NN_layers9North_Palm_Springs_OUT_event_metrics-T_10.csv/content" target="_blank" rel="noopener noreferrer">NN_layers9Hector_Mine_OUT_event_metrics-T_10.csv</a></p> <p>NN_layers9North_Palm_Springs_OUT_event_metrics-T_5.csv, NN_layers9Northridge_OUT_event_metrics-T_5.csv, NN_layers9Landers_OUT_event_metrics-T_5.csv, NN_layers9Hector_Mine_OUT_event_metrics-T_5.csv</p> <p>NN_layers9North_Palm_Springs_OUT_event_metrics-T_3.csv, NN_layers9Northridge_OUT_event_metrics-T_3.csv, NN_layers9Landers_OUT_event_metrics-T_3.csv, NN_layers9Hector_Mine_OUT_event_metrics-T_3.csv</p> <p>NN_layers9North_Palm_Springs_OUT_event_metrics-T_2.csv, NN_layers9Northridge_OUT_event_metrics-T_2.csv, NN_layers9Landers_OUT_event_metrics-T_2.csv, NN_layers9Hector_Mine_OUT_event_metrics-T_2.csv</p> <p>&nbsp;</p> <h3>Supplementary Fig 7</h3> <p>ASK-14 GMPE's</p> <p>df_InputDataPred_EQreal_Whittier_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Landers_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Northridge_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_North_Palm_Springs_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Hector_Mine_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>&nbsp;</p> <p>RF and DNN</p> <p>Prediction_NN_BS_256_9capas_Northridge_3s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Landers_3s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Whittier_3s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_North_Palm_Springs_3s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Hector_Mine_3s_log10_Review_ALL.csv</p> <h3>Suplementary Fig 8</h3> <p>ASK-14 GMPE's</p> <p>df_InputDataPred_EQreal_Whittier_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Landers_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Northridge_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_North_Palm_Springs_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Hector_Mine_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>&nbsp;</p> <p>RF and DNN</p> <p>Prediction_NN_BS_256_9capas_Northridge_5s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Landers_5s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Whittier_5s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_North_Palm_Springs_5s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Hector_Mine_5s_log10_Review_ALL.csv</p> <p>&nbsp;</p> <h3>Suplementary Fig 9</h3> <p>ASK-14 GMPE's</p> <p>df_InputDataPred_EQreal_Whittier_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Landers_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Northridge_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_North_Palm_Springs_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>df_InputDataPred_EQreal_Hector_Mine_plus_CS_sites_Scott_REVIEW_ASK_2014.csv</p> <p>&nbsp;</p> <p>RF and DNN</p> <p>Prediction_NN_BS_256_9capas_Northridge_10s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Landers_10s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Whittier_10s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_North_Palm_Springs_10s_log10_Review_ALL.csv</p> <p>Prediction_NN_BS_256_9capas_Hector_Mine_10s_log10_Review_ALL.csv</p> <p>&nbsp;</p> <h3>Suplementary Fig 10</h3> <p><a href="../api/records/10640493/draft/files/HyperParameters_T2s_log10.csv/content" target="_blank" rel="noopener noreferrer">HyperParameters_T2s_log10.csv</a></p>

opencc-by-4.0Feb 2024View details →
zenodo36/100

Challenges in Developing a Real-Time Bee-Counting Radar

<p>Contained herein is the data used in preparation of the paper titled &ldquo;Challenges in Developing a Real-time Bee-counting Radar.&rdquo; These data were gathered as part of a PhD program provisionally titled &ldquo;Machine Learning to Count and Predict Bee Behaviour and Movement&rdquo; due for submission in early 2024 at Bangor University, Wales, United Kingdom.</p> <p>The purpose of this data was to evaluate the possibility of creating a radar system, with companion computing system, to classify honeybee movement the entrance of the hive in real-time. Samples from core classes were recorded both by hand and later by automatic extraction tools. These core classes included: Inward, outward, hovering, and no-bee samples.</p>

opencc-by-4.0May 2023View details →
zenodo36/100

Real-Time Dataset of Metheorological Measurements Collected During the Project

<p>This dataset contains a collection of real-time meteorological data during the Resisto project. This information has been recorded and is structured into different fields, each representing a specific meteorological variable of the deployed sensors in the Do&ntilde;ana National Park.&nbsp;</p>

opencc-by-4.0Nov 2024View details →
zenodo36/100

Real-Time Dataset of Fire Sensor Measurements Collected During the Resisto Project

<p>This dataset contains real-time environmental measurements from fire detection sensors across multiple locations. These sensors has been deployed on diferent locations, principally on the Do&ntilde;ana National Park.&nbsp;</p>

opencc-by-nc-4.0Nov 2024View details →
zenodo36/100

Datasets corresponding to publication: Machine learning assisted Real-time deformability cytometry of CD34+ cells allows to identify patients with Myelodysplastic Syndromes

<p>This repository contains all dataset that correspond to the publication &quot;Machine learning assisted Real-time deformability cytometry of CD34+ cells allows to identify patients with Myelodysplastic Syndromes&quot;. Furthermore, Python scripts are provided which allow to reproduce all analyses shown in the manuscript.&nbsp;Execution of the scripts requires a Python environment with packages as stated in the Methods section of the manuscript, or by using PyBox 0.1.0. PyBox is a readily installed Python environment containing all packages at the required version. PyBox is publicly available on GitHub: <a href="https://github.com/maikherbig/PyBox">https://github.com/maikherbig/PyBox</a>.</p>

opencc-by-4.0Jul 2021View details →
zenodo36/100

Spectral imaging enables contrast agent-free real-time ischemia monitoring in laparoscopic surgery

<p>Sample video showing the &#39;ischemia index&#39; computed with a deep-learning model trained on multispectral images recorded during partial nephrectomy before a clamp is applied to the renal artery (perfused) and after clamping the artery (ischemic).</p>

opencc-by-4.0Dec 2021View details →
dryad36/100

Data from: Predicting habitat suitability and connectivity for management and conservation of urban wildlife: A real-time web application for grassland water voles

<ol> <li>Natural habitats in urban areas provide benefits for both humans and biodiversity. However, to achieve biodiversity gains we require new techniques to determine habitat suitability and ecological connectivity that will inform urban planning and development.</li> <li>Using an example of an urban population of water voles (<i>Arvicola amphibius</i>) we developed a habitat suitability model and a resistance-surface-based model of landscape connectivity to identify potential connectivity between areas of suitable habitat. We then updated the environmental variables according to new urban development plans and used our models to generate spatially explicit predictions of both habitat suitability and connectivity.</li> <li>To make models accessible to urban and conservation planners we developed an interactive mapping tool that provided users with a graphical user interface (GUI) to inform conservation planning for this species.</li> <li>The model found that habitat suitability for water voles was related to distance from key environmental variables, such as built-up areas and urban green spaces, while the connectivity model identified important corridors connecting areas of potential distribution for this species.</li> <li>Future development plans altered the potential spatial distribution of the water vole population, reducing the extent of suitable habitat in some core areas. The interactive mapping tool made available suitable habitat and connectivity maps for conservation managers to assess new planning applications and for the development of a conservation action plan for water voles.</li> <li>Synthesis and applications: We believe this approach provides a framework for future development of nature conservation tools that can be used by planners to inform ecological decision making, increase biodiversity and reduce human-wildlife conflict in urban environments.</li> </ol>

opencc-zeroJan 2022View details →
zenodo36/100

Data and Source codes for: Real-time Radial Tagging for Quantification of Left Ventricular Torsion

<p>&nbsp;</p> <p>Magnetic Resonance Imaging&nbsp;measurement raw data, simulation, and reconstruction codes used in our paper about &lsquo;Real-time Radial Tagging for Quantification of Left Ventricular Torsion&#39; (DOI:10.1002/mrm.29169).</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2021View details →
zenodo36/100

Dataset for the paper "Real-Time in Situ Monitoring of CO2 Electroreduction in the Liquid and Gas Phases by Coupled Mass Spectrometry and Localized Electrochemistry" DOI: 10.1021/acscatal.2c00609

<p>The data in the attached spreadsheet was used to produce the figures in the paper</p> <p>Authors:Guohui Zhang, Youxin Cui, Anthony Kucernak</p> <p>Title:Real-Time in Situ Monitoring of CO2 Electroreduction in the Liquid and Gas Phases by Coupled Mass Spectrometry and Localized Electrochemistry</p> <p>Journal:ACS Catalysis</p> <p>DOI:10.1021/acscatal.2c00609</p> <p>Please cite the above reference if you wish to use this data</p> <p>DOI of data:10.5281/zenodo.6526651</p>

opencc-by-4.0May 2022View details →
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A real-time feedback system stabilises the regulation of worker reproduction under various colony sizes

<p>Based on individual trait expression, an agent-based simulation was used to identify an explicit mechanism for understanding colony size dependent behaviour. This is the code for and data from the agent-based simulation</p>

opencc-by-4.0Jun 2022View details →
zenodo36/100

Spatio-thermal depth correction of RGB-D sensors based on Gaussian Processes in real-time

<p>This RGB-D dataset is part is part of our publication</p> <p>Heindl, Christoph, et al. &quot;Spatio-thermal depth correction of RGB-D sensors based on Gaussian processes in real-time.&quot;&nbsp;<em>Tenth International Conference on Machine Vision (ICMV 2017)</em>. Vol. 10696. SPIE, 2018.</p> <p>Our capture setup consists of a RGB-D sensor looking towards a known planar object. The sensor is coupled with an electronic linear axis to adjust distance. We captured data at distances [40cm, 90cm, 10cm steps] in the temperate range of [25&deg;C, 35&deg;C, 1&deg;C steps]. At each temperature/distance tuple we grabbed 50 images from both RGB and IR (aligned with RGB) sensors. We then created an artificial depth map for all RGB images utilizing the known calibration target in sight.</p> <p>For more information visit&nbsp;https://github.com/cheind/rgbd-correction</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

Datasets corresponding to "Real-time intelligent classification of COVID-19 and thrombosis via massive image-based analysis of platelet aggregates"

<p>Datasets corresponding to &quot;Real-time intelligent classification of COVID-19 and thrombosis via massive image-based analysis of platelet aggregates&quot;</p> <p>&nbsp;</p> <p>Please find below an explanation for the <strong>files </strong>in this repository:</p> <p><br> <br> <strong>DiseaseClassifPaper_Dataset_01.7z, DiseaseClassifPaper_Dataset_02.7z</strong></p> <p>Experimental data. To reproduce the analyses, unzip both files and put the content into a folder called &quot;Dataset&quot;</p> <p><strong>02_CNN_PhenotypeClassif.7z</strong></p> <p>CNN Phenotype classification. Model was trained using AIDeveloper. using manually labelled data. Labelled Data is contained in folder &quot;03_GatedData&quot;. The AIDeveloper session file in &quot;02_Model\M10_Nitta6l_32pix_8class_meta.xlsx&quot; shows, which files correspond to which subpopulation. The final model &quot;M10_Nitta6l_32pix_8class_448.model&quot; and corresponding .pb files are also located in that folder.</p> <p><strong>03_ExampleMeasurement.zip</strong></p> <p>One measurement file and a corresponding scatterplot</p> <p><strong>04_Dataset_load.zip</strong></p> <p>The python script &quot;03_ExtractFeatures.py&quot; loads the list of available experiment files (01_Dataset_Table_v02.csv). The experiment files are contained in DiseaseClassifPaper_Dataset_01.7z, DiseaseClassifPaper_Dataset_02.7z. The scrip then evaluates each experiment file to obtain distribution parameters for Area and Solidity. These values are written to new &quot;01_Dataset_Table_v03.csv&quot;.</p> <p><strong>05_RF_training</strong></p> <p>Scripts to train and evaluate the Random Forest model (using features contained in &quot;01_Dataset_Table_v03.csv&quot;).</p> <p><strong>07_pytranskit</strong></p> <p>Scripts for training and evaluating CDT-PLDA classifier</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

Real-time magnetic resonance imaging to study orthostatic intolerance mechanisms in human beings: Proof of concept

<p>This dataset was acquired&nbsp;at DLR, Cologne, Germany.&nbsp;The study complied with the Declaration of Helsinki, and was approved by the local ethics committee. All subjects gave written informed consent.</p> <p>&nbsp;</p> <p><strong>Data acquisition</strong><br> <em>MRI data</em></p> <p>All MR images were acquired on a Siemens 3T mMR Biograph using cardiac, spine&nbsp;and head coils. The scanning protocol consisted of the following sequences.</p> <ul> <li><strong>MPI70_SA20_FOV320_16X6MM_33MS</strong>: cardiac real-time MRI of the short axis&nbsp;(TR=2.56&nbsp;ms; TE=1.62&nbsp;ms; FA= 10&deg;; 1.6x1.6 mm; 6 mm slice thickness; 20 slices;&nbsp;FoV320x320 mm;&nbsp;radial spokes 13)</li> <li><strong>MPI70_TP_PCMV100_FOV320_15X6MM_33MS</strong>: blood flow real-time MRI of&nbsp;the pulmonary trunk (TR=3.33&nbsp;ms; TE=2.24&nbsp;ms; FA= 10&deg;; 1.5x1.5 mm; 6 mm slice thickness;&nbsp;FoV=320x320 mm;&nbsp;VENC=100 cm/s; radial spokes 5)</li> <li><strong>MPI70_PCMV100_FOV192_075X6MM_80MS:</strong> blood flow real-time MRI of&nbsp;the middle cerebral artery (TR=4.44&nbsp;ms; TE=3.10&nbsp;ms; FA= 12&deg;; 0.75x0.75 mm; 6 mm slice thickness;&nbsp;FoV=192x192 mm;&nbsp;VENC=100 cm/s; radial spokes 9)</li> </ul> <p>&nbsp;</p> <p>Cinematic real-time MRI of the short axis view and blood flow measurements of the pulmonary trunk and in the left and right middle cerebral artery were acquired at baseline and during -30mmHg LBNP.</p> <p>&nbsp;</p> <p>Video files:</p> <p><a href="https://zenodo.org/record/7066642/files/Series_040_mpi70_SA20_FOV320_16x6mm_33ms_Slice_14.wmv?download=1">https://zenodo.org/record/7066642/files/Series_040_mpi70_SA20_FOV320_16x6mm_33ms_Slice_14.wmv?download=1</a></p> <p><a href="https://zenodo.org/record/7066642/files/Series_103_mpi70_SA20_FOV320_16x6mm_33ms_Slice_14.wmv?download=1">https://zenodo.org/record/7066642/files/Series_103_mpi70_SA20_FOV320_16x6mm_33ms_Slice_14.wmv?download=1</a></p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Sep 2022View details →
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Code and Data for "Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device"

<p><strong>Code and Data for &quot;Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device&quot;.</strong></p> <pre>Code to analyze data produced by the Quantum-Si benchtop device and semiconductor chip is provided in a Python library <strong>qsi_algo</strong> under several submodules: - <strong>rs_caller.py</strong>: Algorithm for calling RS segments (also called ROI segments throughout code). - <strong>rs_caller_controller.py</strong>: Code framework for executing RS calling and property computation in a distributed manner - <strong>rs_properties</strong>: Code for computing properties of identified RS - <strong>rs_classifier</strong>: Algorithms for identifying peptide states (i.e. residue calls) associated with an RS - <strong>utils.py</strong>: shared helper code - <strong>pulse_reader</strong>: reader for binary pulse file - <strong>filters</strong>: ROI and pulse filtering utilities - <strong>plotting</strong>: functions for visualization of data relevant to the analyses presented Jupyter notebooks (<strong>.ipynb</strong>) files are named according to the manuscript figure they are associated with. Analysis code inside uses provided RS (recognition segment) data to demonstrate filtering and residue-calling techniques required to replicate analyses shown in manuscript figures. Please note: several methods rely on randomization for model initialization and/or data sampling which can cause small deviations from equivalent analyses in published figures. The raw data produced from the Quantum-Si benchtop device and semiconductor chip for the assays presented in the accompanying study is presented in a pulse-called binary file format. Pulses can be used as input for RS identification and peptide state identification. Pre-segmented (RS-identified) files are included for convenience. The data contained in the files include: <strong>{run_id}.bin</strong>: Binary format for storing pulse info. The reader provided in <strong>qsi_algo.pulse_reader</strong> produces the following columns: - <strong>aperture_index</strong>: unique aperture index on chip - <strong>start_f</strong>: index of first frame in pulse, counted from the beginning of the run - <strong>end_f</strong>: index of last frame in pulse, counted from the beginning of the run - <strong>dur_f</strong>: duration of pulse in frames - <strong>dur_s</strong>: duration of pulse in seconds - <strong>ipd_f</strong>: interpulse duration in frames (number of frames since end of preceding pulse) - <strong>ipd_s</strong>: interpulse duration in seconds (time in seconds elapsed since end of preceding pulse) - <strong>snr</strong>: signal-to-noise ratio (bin1_intensity / bin1_bg_std) - <strong>intensity</strong>: intensity of pulse (counts above baseline in bin1) - <strong>bin0_intensity</strong>: counts above baseline in bin0 - <strong>intensity_display</strong>: bin1_intensity + bin1_bg_mean - <strong>binratio</strong>: bin0_intensity / bin1_intensity - <strong>bg_mean</strong>: bin1 background mean in region of pulse - <strong>bg_std</strong>: bin1 background standard deviation in region pulse - <strong>bin0_bg_mean</strong>: bin0 background mean in region of pulse - <strong>bin0_bg_std</strong>: bin0 background standard deviation in region pulse <strong>{run_id}.csv.gz</strong>: Compressed comma-separated value file containing RS/ROI properties computed from raw pulses.bin file by included RS caller (example in <strong>rs_caller.py</strong>). - <strong>ap</strong>: unique aperture index on chip - <strong>ROI</strong>: ordinal ROI number in the aperture, 0-indexed - <strong>start_p</strong>: index (.loc) of first pulse in the ROI (inclusive) in pulse dataframe - <strong>end_p</strong>: index (.loc) of last pulse in the ROI (inclusive) in pulse dataframe - <strong>start_f</strong>: first frame of the first pulse in the ROI (inclusive) - <strong>end_f</strong>: Last frame of the last pulse in the ROI (exclusive) - <strong>start_s</strong>: Time (in seconds elapsed from beginning of run) of the start of the ROI - <strong>end_s</strong>: Time (in seconds elapsed from beginning of run) of the end of the ROI - <strong>dur_f</strong>: Duration in frames of the ROI - <strong>dur_s</strong>: Duration in seconds of the ROI - <strong>num_pulses</strong>: Number of pulses in the ROI (that also passed filtering during ROI-calling) - <strong>pw_mean</strong>: Mean pulse duration (in seconds) of pulses in the ROI - <strong>ipd_mean</strong>: Mean inter-pulse duration (in seconds) of pulses in the ROI - <strong>snr_mean</strong>: Mean signal-to-noise ratio of pulses in the ROI - <strong>intensity_mean</strong>: Mean intensity above baseline of pulses in the ROI - <strong>binratio_norm</strong>: Estimated pulse bin ratio of pulses in the ROI, according to the following equation: sum(bin0_intensity*dur_f) / np.sum(bin1_intensity*dur_f) - <strong>ROI_score</strong>: ROI quality score (0-1 from least to most likely to contain recognizer-peptide recognition pulsing) - <strong>binratio_skew</strong>: bin ratio correction factor accounting for binning signal timing differences across the chip. This factor has already been applied to the binratio_norm column</pre>

opencc-by-4.0Aug 2022View details →
zenodo36/100

Real-time imaging of thermally induced microcracks in granite with ultrahigh-temperature instrument

<p>An ultrahigh-temperature heating platform (HS1400G, Instec, Britain) on the optical microscope (BX51M, Olympus, Japan) was developed to observe the microcrack propagation of thin-section samples during heating in real time.</p> <p>Singapore Bukit Timah granite rock cores were examined in this study. The granite rock is widespread and one of the major rock formations in Singapore. It shows significant mechanical deterioration under the influence of heat. The rock sample was prepared as doubly polished thin sections of approximately 60 &mu;m in thickness for petrographic analysis and microthermometric observation. Before the experiment, the slide was heated with an alcohol lamp to dissolve the resin, and the thin-slice sample was removed and immersed in acetone to wash the surface glue to avoid affecting the observation.</p> <p>The granite sample was heated in the following heating process: heat from room temperature of 25℃ to 100℃ at a rate of 20℃/min; maintain the temperature for 5 min, as the thin-section sample is sufficiently small to generate a homogeneous thermal field quickly; heat to 100℃, 200℃, 300℃, 400℃, 500℃, 600℃, 700℃, 800℃ and 900℃ successively; finally, reduce the temperature to room temperature at a cooling rate of 20℃/min from the maximum temperature.</p>

opencc-by-4.0Oct 2022View details →
zenodo36/100

Supplementary Data: Real-time optimal flood control decision making under uncertainty

<p>The files in this record contain data for real-time optimal flood control decision making and risk propagation under multiple uncertainties considered for publication in Water Resources Research.</p> <p>The files consist of:</p> <ul> <li>Pubugou Reservoir data;</li> <li>Source code and results of the Martingale Model of Forecast Evolution (MMFE);</li> <li>Source code and results of the SMAA-2 model;</li> <li>Source code and results of SMAA-TOPSIS model;</li> <li>Source code and results of the stochastic programming with recourse model.</li> </ul>

opencc-by-4.0Oct 2017View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record