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162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_spheroid_RNA_seq]
GEO Series GSE226016. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
CTCF mutation at R567 affects mouse heart development via 3D genome rearrangement and transcription dysregulation [RNA-seq]
GEO Series GSE262508. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
High resolution 3D chromatin maps of human primary monocytes [RNA-Seq]
GEO Series GSE157978. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Systematic mapping of 3D enhancer interactions reveals lineage specific regulatory networks during early mouse developmental decisions [RNA-Seq]
GEO Series GSE213643. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance [RNA-Seq]
GEO Series GSE165571. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
CTCF-mediated 3D chromatin predetermines the gene expression program in the male germline (RNA-Seq)
GEO Series GSE272432. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
HP1 drives de novo 3D genome reorganization in early Drosophila embryos (RNA-seq)
GEO Series GSE140541. Drosophila melanogaster. 7 samples. Type: Expression profiling by high throughput sequencing.
3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia [etp82a_RNA-seq]
GEO Series GSE280798. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [RNA-seq]
GEO Series GSE118713. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
CRISPR pooled screen and QuantSeq 3' mRNA sequencing to identify microRNAs (miRNAs) important for Breast Cancer 3D growth [RNA-seq]
GEO Series GSE243883. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Carboplatin resistance-associated changes in the 3D chromatin landscape of a triple-negative breast cancer Patient-Derived Xenograft [RNA-Seq]
GEO Series GSE201434. Homo sapiens; Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
N6-Methyladenosine modification of mRNA regulates the transition from 2D to 3D growth in the moss Physcomitrium patens [RNA-seq]
GEO Series GSE213344. Physcomitrium patens. 4 samples. Type: Expression profiling by high throughput sequencing.
Ectopic recruitment of the CTCF N-terminal domain with two proximal zinc-finger domains as a tool for 3D genome engineering [RNA-seq]
GEO Series GSE300306. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Regulation of 3D genome organization, transcription and histone H3K9me2 by histone H3K9 methyltransferases [RNA-Seq]
GEO Series GSE169098. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [RNA-seq LpreB]
GEO Series GSE232042. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Comparative Characterization of 3D Chromatin Organization in Triple-Negative Breast Cancers [RNA-seq]
GEO Series GSE167152. Homo sapiens. 31 samples. Type: Expression profiling by high throughput sequencing.
PAXIP1 and STAG2 converge to maintain 3D genome architecture and facilitate promoter/enhancer contacts to enable stress hormone-dependent transcription [RNA-seq]
GEO Series GSE221916. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels [RNA-Seq]
GEO Series GSE122545. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA-sequencing of breast cancer cells growing in invasion permissive and non-permissive 3D matrices
GEO Series GSE197821. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia [RNA-seq]
GEO Series GSE243914. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.