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117
datasets available to search
ShareScore release 0.9.0
Dataset results
117 results for “spatial niche”
Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches [scRNA-Seq]
GEO Series GSE300039. Danio rerio. 2 samples. Type: Expression profiling by high throughput sequencing.
Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics]
GEO Series GSE274509. Mus musculus. 4 samples. Type: Other.
Temporal and spatial niche partitioning in a retrotransposon community of the Drosophila melanogaster genome
GEO Series GSE274394. Drosophila melanogaster. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Integrated transcriptomics of human blood vessels defines the spatially regulated niche for early mesenchymal progenitors
GEO Series GSE217216. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Fate determination of msc by inflammatory niche in HO [spatial transcriptomics]
GEO Series GSE246448. Mus musculus. 4 samples. Type: Other.
Spatial transcriptomics reveals molecular cues underlying the site specificity of the adult mouse oral mucosa and its stem cell niches
GEO Series GSE267602. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signaling in monocyte-derived alveolar macrophages
GEO Series GSE127803. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer's disease mouse model as revealed by spatial transcriptomics
GEO Series GSE263793. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing; Other.
Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer’s disease mouse model as revealed by spatial transcriptomics (Stereo-seq Spatial Transcriptomics)
GEO Series GSE263789. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing; Other.
Figure 6 in Analysis of the spatial organization of Vallonia pulchella (Muller, 1774) ecological niche in Technosols (Nikopol manganese ore basin, Ukraine)
Figure 6. Results of ENFA-mapping of Vallonia pulchella ecological niche.
Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling
GEO Series GSE312129. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Integrative single-cell and spatial transcriptomic analyses identify a pathogenic cholangiocyte niche and TNFRSF12A as therapeutic target for biliary atresia
GEO Series GSE176189. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing; Other.
Temporal-spatial Establishment of Initial Niche for the Primary Spermatogonial Stem Cell formation is Determined by an ARID4B Regulatory Network (RNA-Seq)
GEO Series GSE84804. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Data from: Mutualistic mimicry enhances species diversification through spatial segregation and extension of the ecological niche space
Open the record for dataset details and reuse information.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium]
GEO Series GSE250346. Homo sapiens. 45 samples. Type: Other.
Parallel spatial transcriptomics, single-cell and bulk RNA-Seq analysis of the human embryonic HSC niche, the dorsal aorta
GEO Series GSE151877. Homo sapiens. 44 samples. Type: Expression profiling by high throughput sequencing.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis
GEO Series GSE276945. Homo sapiens. 46 samples. Type: Other.
Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture.
GEO Series GSE172129. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches
GEO Series GSE192742. Danio rerio; Macaca mulatta; Homo sapiens; Mus musculus; Gallus gallus; Sus scrofa; Mesocricetus auratus. 147 samples. Type: Expression profiling by high throughput sequencing.
Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling
GEO Series GSE312932. Homo sapiens. 10 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.