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F I G U R E 3 in Phylogenetic placement and description of Ngaliadessus humphreysi gen. et sp. nov., Watts & Villastrigo (Coleoptera: Dytiscidae), a subterranean diving beetle from the Ngalia Basin in central Australia

F I G U R E 3 Adult Ngaliadessus humphreysi sp. nov., Watts & Villastrigo. (a) Dorsal view of adult; (b) line drawing; (c) line drawing of ventral surface of mesotrochanter and mesofemur; (d) line drawing of ventral surface of metatrochanter and metafemur; (e) portion of spermatheca with internal spine.

F I G U R E 2 in Phylogenetic placement and description of Ngaliadessus humphreysi gen. et sp. nov., Watts & Villastrigo (Coleoptera: Dytiscidae), a subterranean diving beetle from the Ngalia Basin in central Australia

F I G U R E 2 BEAST maximum clade credibility tree of Bidessini based on a combination of whole mitochondrial genome sequences, Histone 3 and 18S sequences (Table S1). The new genus/species is shown in bold, and numbers on branches represent Bayesian posterior probabilities.

F I G U R E 1 A in Phylogenetic placement and description of Ngaliadessus humphreysi gen. et sp. nov., Watts & Villastrigo (Coleoptera: Dytiscidae), a subterranean diving beetle from the Ngalia Basin in central Australia

F I G U R E 1 A geological representation of the Ngalia Basin with subterranean groundwaters and its main sampling sites for stygobiotic taxa, including Sullivans Well. The geology was determined from Australian Geological Survey 1: 250 000 maps SF52-12 Mt Doreen (1995) and Napperby SF53-09 (1982) and information compiled by Edgoose and Ahmad (2013). Inset shows the approximate location of the Ngalia Basin in central Australia.

F I G U R E 4 in Phylogenetic placement and description of Ngaliadessus humphreysi gen. et sp. nov., Watts & Villastrigo (Coleoptera: Dytiscidae), a subterranean diving beetle from the Ngalia Basin in central Australia

F I G U R E 4 Line drawings of larva of Ngaliadessus humphreysi sp. nov.: (a) ventral view of head capsule; (b) dorsal surface of head capsule; (c) enlarged view of ventral surface of head capsule; (d) dorsal view of abdominal segment 8 and basal segment of urogomphi; small circle on segment 8 represents only visible pore.

opencc-by-4.0Nov 2024View details →

Dataset: Osmoregulation and hypoxia tolerance in the cenote isopod Creaseriella anops: Insights into its distribution in Karst Subterranean Estuaries

<p>This data set contains the information supporting the research article  "Osmoregulation and hypoxia tolerance in the cenote isopod Creaseriella anops: Insights into its distribution in Karst Subterranean Estuaries" </p> <p>It contains Respirometry, indicators of cellular damage and Antioxidant system, critical temperatures, and Temperature induced metabolic rates of the isopod Creaseriella anops, and endemic species of the Karst Subterranean Estuaries from the Yucatan Peninsula Mexico.</p>

Fig. 5 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 5. Proleonhardella (Proleonhardella) tarensis Ćurčić & Pavićević sp. nov. from Pit 4-1-3-27, village of Kaluđerske Bare, Mt Tara, near the town of Bajina Bašta, western Serbia. A–F. Paratype male (IZFB-21/28). A. Habitus (dorsal view). B. Surface of pronotum (dorsal view). C. Mesosternal carina (lateral view). D. Surface of elytra (dorsal view). E. Aedeagus (dorsal view). F. Left paramere apex (dorsal view). G–I. Paratype female (IZFB-21/29). G. Left gonostylus (dorsal view). H. Spermatheca (lateral view). I. Abdominal segment VIII (ventral view). Scale bars: A = 500 μm; B, D, G, I = 100 μm; C, E = 200 μm; F = 25 μm; H = 50 μm.

Fig. 2 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 2. Bozidaria serbooccidentalis Ćurčić & Pavićević gen. et sp. nov. from the Simina Jama Pit, village of Gornje Košlje, Debelo Brdo saddle, Mt Povlen, near the town of Ljubovija, western Serbia. A–F. Paratype male (IZFB-21/3). A. Habitus (dorsal view). B. Surface of pronotum (dorsal view). C. Mesosternal carina (lateral view). D. Surface of elytra (dorsal view). E. Aedeagus (dorsal view). F. Left paramere apex (dorsal view). G–I. Paratype female (IZFB-21/4). G. Left gonostylus (dorsal view). H. Spermatheca (lateral view). I. Abdominal segment VIII (ventral view). Scale bars: A = 500 μm; B, D, G, I = 100 μm; C, E = 200 μm; F = 25 μm; H = 50 μm.

Fig. 9 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 9. Map of the distribution of taxa of the genera Bozidaria Ćurčić & Pavićević gen. nov. and Proleonhardella Jeannel, 1910. White circles: B. serbooccidentalis Ćurčić & Pavićević gen. et sp. nov. Turquoise star: P. (Pholeuonillus) adolfi (Reitter, 1911). Light blue sun: P. (Proleonhardella) matzenaueri matzenaueri (Apfelbeck, 1907). Dark blue sun: P. (P.) matzenaueri ottonis Müller, 1917. Purple flower: P. (P.) leonhardi (Breit, 1913). Yellow cross: P. (P.) apfelbecki Jeannel, 1924. Brown circles: P. (P.) remyi Jeannel, 1934. Green squares: P. (P.) hirtella Jeannel, 1934. Pink pentagon: P. (P.) neumanni (Apfelbeck, 1901). Red triangle: P. (P.) weiratheri (Reitter, 1913). Orange rhombuses: P. (P.) tarensis Ćurčić & Pavićević sp. nov. Scale bar = 50 km.

Fig. 8 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 8. Sovljačka Pećina Cave, village of Šljivovica, Mt Tara, near the town of Bajina Bašta, western Serbia (modified after Bosco 2016). A. Entrance. B. Immediate surroundings (a coniferous forest and view of the Sovljak stream). C. A plan and a longitudinal section. The red circles indicate the places where specimens of P. (P.) tarensis Ćurčić & Pavićević sp. nov. were found.

Fig. 3 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 3. Bozidaria serbooccidentalis Ćurčić & Pavićević gen. et sp. nov. from the Simina Jama Pit, village of Gornje Košlje, Debelo Brdo saddle, Mt Povlen, near the town of Ljubovija, western Serbia. Holotype male (IZFB-21/1), aedeagus. A. Dorsal view. B. Lateral view. Scale bar = 200 μm.

Fig. 4. A plan and a in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 4. A plan and a longitudinal section of the Simina Jama Pit, village of Gornje Košlje, Debelo Brdo saddle, Mt Povlen, near the town of Ljubovija, western Serbia (modified after Anđelić et al. 2011). The red circles indicate the places where specimens of Bozidaria serbooccidentalis Ćurčić & Pavićević gen. et sp. nov. were found.

Fig. 10 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 10. Illustrations of morphological characters presented in the Key to the taxa of the genus Proleonhardella Jeannel, 1910 (after Jeannel 1924; Ćurčić et al. 2008a). A. Short elytra, less than twice as long as pronotum. B. Long elytra, more than twice as long as pronotum. C. Globular antennomere VIII in males. D. Slightly elongate antennomere VIII in males. E. Elytra parallel in basal half. F. Elytra narrowed in basal half.

Fig. 7. Pit 4-1-3-27 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 7. Pit 4-1-3-27, village of Kaluđerske Bare, Mt Tara, near the town of Bajina Bašta, western Serbia (modified after Bosco 2016). A. Entrance. B. A chamber in which one type specimen of Proleonhardella (Proleonhardella) tarensis Ćurčić & Pavićević sp. nov. was collected. C. A 3D view. D. A plan and a longitudinal section. The red circles indicate the places where specimens of P. (P.) tarensis Ćurčić & Pavićević sp. nov. were found.

Fig. 6 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 6. Proleonhardella (Proleonhardella) tarensis Ćurčić & Pavićević sp. nov. from Pit 4-1-3-27, village of Kaluđerske Bare, Mt Tara, near the town of Bajina Bašta, western Serbia. Holotype male (IZFB-21/27), aedeagus. A. Dorsal view. B. Lateral view. Scale bar = 200 μm.

Fig. 1 in On the diversity of subterranean beetles of the Dinarides: new leiodid taxa (Coleoptera: Leiodidae) from Serbia

Fig. 1. Illustrations of morphological characters presented in the Key to the leptodirine leiodid genera of the phyletic series of "Leonhardella" (after Jeannel 1911, 1924; Ćurčić et al. 2008a). A. Absence of mesosternal carina. B. Presence of mesosternal carina. C. Absence of a concavity on mesosternal carina. D. Presence of a deep concavity on mesosternal carina. E. Presence of elliptical body shape. F. Presence of pholeuonoid body shape. G. Presence of dilated protarsi in males. H. Presence of undilated protarsi in males. I. Presence of a short rounded basal projection on basal bulbus. J. Presence of a long subtriangular basal projection on basal bulbus. K. Presence of subglobular antennomere VIII. L. Presence of elongate antennomere VIII. M. Presence of paramerae with two setae. N. Presence of paramerae with three setae.

opencc-by-4.0Jun 2024View details →

Research data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach"

<div><strong>Research Data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em></strong></div> <div> </div> <div>Dear reader,</div> <div> </div> <div>reasearch data are provided for the research article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em> (https://doi.org/10.1016/j.advwatres.2024.104763). The authors hope that the research data allows for a better understanding of the modeling workflow. The research data covers the following files:</div> <div> <ul> <li>Python scripts to create the models <ul> <li>Model scripts using FloPy (Bakker et al., 2016) are stored as .py files in './model_data/flopy_scripts/', named 'model_variant_vXYZ.py', where 'XYZ' is a wildcard for the model number. </li> <li>--> Note that model numbers correspond to the different model variants as referred to in the article, see overview below.</li> <li>The model scripts require postfix files, stored in './model_data/flopy_scripts/postfix/', a PHREEQC database file, stored in './model_data/flopy_scripts/template_database/', as well as spreadsheets that contain the initial concentrations as well as reaction rate parameters needed by PHT3D, stored as .xlsx files in './model_data/flopy_scripts/', to create the models.</li> <li>Note that the .xlsx files are used by PHT3D-FSP in the model scripts to generate relevant PHT3D input files (compare https://doi.org/10.5281/zenodo.7559750 for more details).</li> </ul> </li> <li>SEAWAT/PHT3D input files <ul> <li>Original SEAWAT and PHT3D input files, which were created with the corresponding model scripts previously (see step before).</li> <li>Input files are stored in './model_data/model_files/vXYZ/model_files/' for each model variant, where 'XYZ' is a wildcard for the model number.</li> <li>SEAWAT/PHT3D executables can directly run the model files files. Thus, the files don't need to be re-created via the previous step.</li> </ul> </li> <li>Model outputs <ul> <li>Model output data is stored as NumPy arrays in './model_data/model_files/vXYZ/npy_arrays/', where 'XYZ' is a wildcard for the model number.</li> <li>The script './model_data/flopy_scripts/template_output/pht3d_output_hpc_v006.py' was used to generate the output files.</li> <li>2-D species concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/species/', where 'XYZ' is a wildcard for the model number.</li> <li>Species min./max. concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/min_max/', where 'XYZ' is a wildcard for the model number.</li> <li>2-D water budget arrays (CH & WEL boundaries) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/budgets/', where 'XYZ' is a wildcard for the model number.</li> <li>Model discretization information (ncol, nrow, nlay etc.) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/discretization/', where 'XYZ' is a wildcard for the model number.</li> </ul> </li> <li>Figure files <ul> <li>Original figure files as well as the corresponding Python scripts to create the figures are stored in the subfolder'./figures'.</li> </ul> </li> </ul> <p>Numbering of the model variants is as follows:<br><br>v401 --> VAR-conservative<br>v402 --> VAR-OM<br>v403 --> VAR-C/I<br>v404 --> VAR-C/I/S<br>v405 --> VAR-C/I/P<br>v406 --> VAR-C/I/P/H<br>v407 --> VAR-C/I/P/V<br>v408 --> VAR-C/I/P-Co<br>v409 --> VAR-all<br>v410 --> VAR-all (no C)</p> </div> <div> </div> <div>Literature:</div> <div> </div> <div>Bakker, M., Post, V., Langevin, C.D., Hughes, J.D., White, J.T., Starn, J.J. and Fienen, M.N., 2016. Scripting MODFLOW model development using Python and FloPy. Groundwater, 54(5), pp.733-739. https://doi.org/10.1111/gwat.12413</div> <div> </div> <div>Seibert, S.L., Massmann, G., Meyer, R., Post, V.E.A., Greskowiak, J., 2024. Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach. Advances in Water Resources. https://doi.org/10.1016/j.advwatres.2024.104763</div> <div> </div> <div><strong>Contact one of the authors if you have further questions</strong>: Stephan L. Seibert (stephan.seibert@uol.de), Janek Greskowiak (janek.greskowiak@uol.de), Vincent E.A. Post (vincent@edinsi.nl), Rena Meyer (rena.meyer@uol.de) or Gudrun Massmann (gudrun.massmann@uol.de)</div>

Figure 15 in An overview on the subterranean fauna from Central Asia

Figure 15. Gastropoda: A, B = Pseudocaspia ljovuschkini Starobogatov, 1972; C, D = Pseudocaspia kainarensis Starobogatov, 1972; E = Pseudocaspia starostini Starobogatov, 1972; F, G = Kainarella minima Starobogatov, 1972; H = Bucharamnicola bucharica (Shadin, 1952); I = Chirgisia alaarchaensis Glöer, Boeters & Pešić, 2014; J = Paladilhiopsis sp.2 Starobogatov, 1962; K = Cincinna pamirensis Starobogatov.

Figure 10 in An overview on the subterranean fauna from Central Asia

Figure 10. Foraminiferida: A = Spiroloculina turkomanica Brodsky, 1928; B = Biloculina elongata turkomanica Brodsky, 1929; C = Biloculina turkomanica Brodsky, 1928; D = Triloculina turkomanica Brodsky, 1929; E, F = Nodosaria turkomanica Brodsky, 1929; G, H = Lagena turkomanica Brodsky, 1929; I, J, K = Trochamminita sp.; L, M = Miliammina sp.; N, O = Borovina zernovi Schmalhausen, 1950. (Figs. A-H, after Brodsky, 1928; figs. I-O, after Birstein & Ljovuschkin, 1965).

Figure 5. A in An overview on the subterranean fauna from Central Asia

Figure 5. A (upper) Tectonical aspect of the Issyk-Kul Lake depression, northern Tien Shan, Kyrghyzstan (After Bowman et al., 2004). B (lower) Sketch of the Issyk-Kul Lake, and its rivers in adjacent lands (After Jankowskaja, 1972; modified).

Figure. 4 in An overview on the subterranean fauna from Central Asia

Figure. 4 Schematic diagram showing the kiariz (khana) concept. 1 = Mother well; 2 = excavation debris (soil crater); 3 = vertical shafts; 4 = kiariz gallery; 5 = land surface; 6 = outlet; 7 = storage tank; 8 = irrigation land (After Jankowskaja, 1972; modified). Kiarizs are present in Tadjikistan, Turkmenistan and Uzbekistan. They are artificial subterranean galleries dug in desert zones to reduce evaporation. They collect water from mountains or foot hills, for alimentation or irrigation. Khana wells are 1.1 to 22 m depth, the water from 0.5 to 9 m depth, the temperature from 12 to 22°C, the pH of 7.2/7.5; water Na Cl or Na-SO4 type.