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172 results for “taxonomic annotation”
Fig. 5 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 5. Comparison of the experimental ECD spectra of 2 and calculated ECD spectra for stereoisomer of 2 shown in Fig. 2.
Fig. 1. Overall molecular network obtained from MZmine2 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 1. Overall molecular network obtained from MZmine2-preprocessed HPLC-MS2 data of C. scillifolium bulbs crude alkaloid extract and first chromatographic fractions. Triangle-shaped nodes are tentatively-tagged against ISDB and benefit from a taxonomical re-ranking of the tentative candidates (their structures are provided in Fig. S1, Supporting Information). Nodes highlighted in orange correspond to the targeted structures (1–4) in the phytochemical workflow. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 4. Comparison of the experimental ECD spectrum of 1 and calculated ECD spectrum for the (3S, 4aS, 10bS, 11S) enantiomer.
Data from: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments
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FIGURE 6 in Annotated list of Mimallonidae (Lepidoptera, Mimallonoidea) from Trinidad and Tobago, with the description of a new species of Cicinnus Blanchard, 1852 and taxonomic notes
FIGURE 6. Cicinnus magnapuncta live female. Trinidad, Brasso Seco. Photo courtesy of Kris Sookdeo.
The impact of transitive annotation on the training of taxonomic classifiers
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The impact of transitive annotation on the training of taxonomic classifiers- Datasets
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FIGURE 5 in Freshwater and brackish water fishes of Sakhalin Island (Russia) in inland and coastal waters: an annotated checklist with taxonomic comments
FIGURE 5. Typical freshwater lake in the south of Sakhalin Island (photo by Yu. V. Dyldin)
FIGURE 4 in Freshwater and brackish water fishes of Sakhalin Island (Russia) in inland and coastal waters: an annotated checklist with taxonomic comments
FIGURE 4. Poronai River, Sakhalin Island (photo by S.S. Makeev)
FIGURE 3 in Freshwater and brackish water fishes of Sakhalin Island (Russia) in inland and coastal waters: an annotated checklist with taxonomic comments
FIGURE 3. Tym' River, Sakhalin Island (photo by S.S. Makeev)
FIGURE 2 in Freshwater and brackish water fishes of Sakhalin Island (Russia) in inland and coastal waters: an annotated checklist with taxonomic comments
FIGURE 2. Amur estuary, Sakhalin coast (photo by V.N. Koshelev)
FIGURE 1 in Freshwater and brackish water fishes of Sakhalin Island (Russia) in inland and coastal waters: an annotated checklist with taxonomic comments
FIGURE 1. Map of Sakhalin Island and the adjacent areas
Supplementary material 4 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The interactive Krona chart associated with Figure 2 :
Supplementary material 2 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The MIxS-BE annotations implemented for the built environment sequences during the workshop :
Figure 3 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
Figure 3 Analysis of the MIxS-BE "building occupancy type" (type of building where the underlying sample was taken). The figure is based on Abarenkov et al. (2016) plus the data added during the workshop, such that it indicates the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2017.
Figure 2 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
Figure 2 Krona chart of the taxonomic affiliation of the built environment sequences down to order level. The Krona chart lists all annotated built environment sequences except those classified as Fungi sp. (32%) and those of non-fungal origin (1%). An interactive version of the Krona chart is provided as Supplementary material 4. The figure is based on Abarenkov et al. (2016) plus the data added during the workshop, such that it indicates the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2017.
Figure 1 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
Figure 1 Analysis of the built environment sequences for country of collection. Country centroids based on the geographical centres of contiguous country land masses are marked with bubbles of different size on the global map to indicate the number of built environment sequences originating from these countries as stated explicitly in the underlying INSDC records or as restored during the present effort and in Abarenkov et al. (2016) (57 distinct countries, sequence count ranging from 1 to 3,091). The figure is based on Abarenkov et al. (2016) plus the data added during the workshop, such that it indicates the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2017.
FIGURE 5 in Review of the fossil genus Largusoperla (Plecoptera: Perlidae): Annotated checklist, taxonomic identification, and description of a new species
FIGURE 5. Largusoperla reni, sp. nov. Photograph and reconstruction of terminalia, ventral view.
FIGURE 3 in Review of the fossil genus Largusoperla (Plecoptera: Perlidae): Annotated checklist, taxonomic identification, and description of a new species
FIGURE 3. Largusoperla reni, sp. nov. Adult habitus, dorsal view.
FIGURE 1 in Review of the fossil genus Largusoperla (Plecoptera: Perlidae): Annotated checklist, taxonomic identification, and description of a new species
FIGURE 1. Available male paraprocts and female subgenital plates in Largusoperla, ventral view.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.