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Figure 3 in Changes in a soil microarthropod community in the vicinity of dominant tree species under trampling management at the Safari Zoological Center, Israel
Figure 3 The taxon richness, Shannon index, Simpson index, and Evenness index (mean ± SD) of soil Acari at different treatment sites at the Safari Zoological Center, Israel, December 2013. OE = open places under enclosure, OT = open places under trampling; EE = E. camaldulensis canopy habitat under enclosure, ET =E. camaldulensis canopy habitat under trampling, TE =T. aphylla canopy habitat under enclosure, TT =T. aphylla canopy habitat under trampling, CE =C. sempervirens canopy habitat under enclosure, CT =C. sempervirens canopy habitat under trampling. Different letters represent significance at p<0.05.
Figure 2 in Changes in a soil microarthropod community in the vicinity of dominant tree species under trampling management at the Safari Zoological Center, Israel
Figure 2 The abundance (individuals per 10 g dry soil substrate; mean ± SD) of soil microarthropod taxa extracted from core samples at different treatment sites at the Safari Zoological Center, Israel, December 2013. OE = open places under enclosure, OT = open places under trampling; EE =E. camaldulensis canopy habitat under enclosure, ET =E. camaldulensis canopy habitat under trampling, TE = T. aphylla canopy habitat under enclosure, TT =T. aphylla canopy habitat under trampling, CE = C. sempervirens canopy habitat under enclosure, CT =C. sempervirens canopy habitat under trampling. Different letters within the same group represent significance at p<0.05.
Figure 1 in Changes in a soil microarthropod community in the vicinity of dominant tree species under trampling management at the Safari Zoological Center, Israel
Figure 1 Location of study sites at the Safari Zoological Center, Israel. OE = open places under enclosure, OT = open places under trampling; EE =E. camaldulensis canopy habitat under enclosure, ET = E. camaldulensis canopy habitat under trampling, TE =T. aphylla canopy habitat under enclosure, TT = T. aphylla canopy habitat under trampling, CE =C. sempervirens canopy habitat under enclosure, CT = C. sempervirens canopy habitat under trampling.
Fig. 7. Maximum-likelihood tree for the mitochondrial DNA gene Cytochrome Oxidase C subunit 1 in A new species of the catfish Neoplecostomus (Loricariidae: Neoplecostominae) from a coastal drainage in southeastern Brazil
Fig. 7. Maximum-likelihood tree for the mitochondrial DNA gene Cytochrome Oxidase C subunit 1 for specimens of Neoplecostomus microps from rio Paraíba do Sul, rio Guapi- Açu and rio Macaé, and of Neoplecostomus paraty, using TN93+G model (n=21). Neoplecostomus paranensis and Neoplecostomus ribeirensis were used as outgroups.
Data from: Soil organic carbon stability in forests: distinct effects of tree species identity and traits
Rising atmospheric CO2 concentrations have increased interest in the potential for forest ecosystems and soils to act as carbon (C) sinks. While soil organic C contents often vary with tree species identity, little is known about if, and how, tree species influence the stability of C in soil. Using a 40‐year‐old common garden experiment with replicated plots of eleven temperate tree species, we investigated relationships between soil organic matter (SOM) stability in mineral soils and 17 ecological factors (including tree tissue chemistry, magnitude of organic matter inputs and their turnover, microbial community descriptors, and soil physico‐chemical properties). We measured five SOM stability indices, including heterotrophic respiration, C in aggregate‐occluded particulate organic matter (POM) and mineral‐associated SOM, and bulk SOM δ15N and ∆14C. The stability of SOM varied substantially among tree species and this variability was independent of the amount of organic C in soils. Thus, when considering forest soils as C sinks, the stability of C stocks must be considered in addition to their size. Further, our results suggest tree species regulate soil C stability via the composition of their tissues, especially roots. Stability of SOM appeared to be greater (as indicated by higher δ15N and reduced respiration) beneath species with higher concentrations of nitrogen and lower amounts of acid‐insoluble compounds in their roots, while SOM stability appeared to be lower (as indicated by higher respiration and lower proportions of C in aggregate‐occluded POM) beneath species with higher tissue calcium contents. The proportion of C in mineral‐associated SOM and bulk soil ∆14C, though, were negligibly dependent on tree species traits, likely reflecting an insensitivity of some SOM pools to decadal‐scale shifts in ecological factors. Strategies aiming to increase soil C stocks may thus focus on particulate C pools, which can more easily be manipulated and are most sensitive to climate change.
Raw data used for COI delineation of the Eupolybothrus species: Authors: Stoev et al. 2013 Data type: genomic The archive contains the following data: 1) fasta-Alignment as the basis for all analyses (.FASTA), 2) mega-file for the calculation of the genetic distances and the NJ tree (.MDSX), 3) NJ-tree in Newick format (.NWK), 4) graph of the TCS Software for the Statistical Parsimony method (.GRAPH) File: E_cavernicolus.rar from: Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data - Biodiversity Data Journal 1: e1013 (28 October 2013) https://doi.org/10.3897/BDJ.1.e1013
<p>Authors: Stoev et al. 2013 Data type: genomic The archive contains the following data: 1) fasta-Alignment as the basis for all analyses (.FASTA), 2) mega-file for the calculation of the genetic distances and the NJ tree (.MDSX), 3) NJ-tree in Newick format (.NWK), 4) graph of the TCS Software for the Statistical Parsimony method (.GRAPH) File: E_cavernicolus.rar</p>
Fig. 11. Bayesian inference trees. A. 16S rRNA dataset. B. Cytochrome oxidase I in Designation of a neotype for Myxicola infundibulum (Montagu, 1808) (Annelida: Sabellidae) and a new species from the UK
Fig. 11. Bayesian inference trees. A. 16S rRNA dataset. B. Cytochrome oxidase I gene dataset. The first value at each node represents maximum likelihood bootstrap support, the second the Bayesian posterior probabilities and the third the maximum parsimony bootstrap support.
Fig. 6. RAxML tree for 18S in Two New Species of Centrohelid Heliozoans: Acanthocystis costata sp. nov. and Choanocystis symna sp. nov.
Fig. 6. RAxML tree for 18S rRNA genes of 8 pterocystid heliozoans (1320 nucleotide positions). Only bootstrap values more than 50% are shown. New sequence is in bold.
Fig. 5. RAxML tree for 18S in Two New Species of Centrohelid Heliozoans: Acanthocystis costata sp. nov. and Choanocystis symna sp. nov.
Fig. 5. RAxML tree for 18S rRNA genes of 16 heliozoans from the genus Acanthocystis and Polyplacocystis ambigua as an outgroup (1520 nucleotide positions). Only bootstrap values more than 50% are shown. New sequence is in bold. Crossed branches were shortened fourfold.
Figure 1 in A New Species of Metaprotella (Crustacea: Amphipoda: Caprellidae) from One Tree Island, Southern Great Barrier Reef, Queensland, Australia
Figure 1. Metaprotella lowryi sp. nov., holotype male, 7.08 mm, AM P.100147, and paratype female, 6.02 mm, AM P.100149, One Tree Island, Great Barrier Reef, Queensland, Australia, 23°29'05"S 152°04'07"E. Scale 1.0 mm.
Figure 2 in A New Species of Metaprotella (Crustacea: Amphipoda: Caprellidae) from One Tree Island, Southern Great Barrier Reef, Queensland, Australia
Figure 2. Metaprotella lowryi sp. nov., holotype male, 7.08 mm, AM P.100147, One Tree Island, southern Great Barrier Reef, Queensland, Australia, 23°29'05"S 152°04'07"E. L, left; LL, lower lip; MD, mandible; MX, maxilla, MXP, maxilliped; R, right, and UL, upper lip. Scale = 0.05 mm.
Figure 3 in A New Species of Metaprotella (Crustacea: Amphipoda: Caprellidae) from One Tree Island, Southern Great Barrier Reef, Queensland, Australia
Figure 3. Metaprotella lowryi sp. nov.: One Tree Island, southern Great Barrier Reef, Queensland, Australia, 23°29'05"S 152°04'07"E: A2, G1, G2 (M), P3–P7, holotype male, 7.08 mm, AM P.100147; G2 (M*), AB, paratype male, 8.59 mm, AM P.100148; G2 (F), paratype female, 6.02 mm, AM P.100149. A2, antenna 2; AB, abdomen; F, female; G1, gnathopod 1; G2, gnathopod 2; M, male; P3–P7, pereopod 1 to pereopod 7, respectively. Scale: G1, P3, P4, and AB = 0.1 mm; 0.2 mm for all others.
Fig. 14 in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 14. Bayesian tree inferred from the analysis of concatenated 18S, 28S and COI gene sequences. Node values indicate Bayesian posterior probabilities.
Fig. 10 in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 10. Ventral view of Metapolystoma theroni n. sp. holotype. Abbreviations: eg, egg; gb, genital bulb; gc, genito–intestinal canal; ha, hamuli; hp, haptor; ic, intestinal caecum; mg, Mehlis gland; mo, mouth; oc, oncomiracidium; od, oviduct; oi, oo ¨–vitelline canal; o¨o, o¨otype; os, false oral sucker; ov, ovarium; ph, pharynx; su, sucker; sv, semen vesicle; te, testis; ut, uterus; va, vagina; vc, vaginal canal; vd, vas deferens; vi, vitelline; vl, vitelline duct; vv, vitello–vaginal canal.
Fig. 11. Metapolystoma theroni n in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 11. Metapolystoma theroni n. sp. from Boophis madagascariensis. a, marginal hooklets 1 (top), 2–7 (middle) and 8 (bottom) from holotype and paratypes; b, hamuli from holotype; c, hamulus development; d, genital crown from holotype.
Fig. 12 in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 12. Ventral view of Metapolystoma multiova n. sp. holotype. Abbreviations: eg, egg; gb, genital bulb; gc, genito–intestinal canal; ha, hamuli; hp, haptor; ic, intestinal caecum; mo, mouth; oc, oncomiracidium; od, oviduct; os, false oral sucker; ov, ovarium; ph, pharynx; su, sucker; te, testis; va, vagina; vi, vitelline; vv, vitello–vaginal canal.
Fig. 13. Metapolystoma multiova n in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 13. Metapolystoma multiova n. sp. from Boophis occidentalis. a, marginal hooklets 1 (top), 2–7 (middle) and 8 (bottom) from holotype and paratypes; b, hamuli from holotype (left) and from paratype (right); c, genital crown from holotype.
Fig. 6 in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 6. Ventral view of Metapolystoma falcatum n. sp. from Boophis doulioti, neotenic form. Abbreviations: gb, genital bulb; gc, genito–intestinal canal; hp, haptor; ic, intestinal caecum; mg, Mehlis gland; mo, mouth; od, oviduct; oi, oo¨–vitelline canal; o¨o, o¨otype; os, false oral sucker; ov, ovarium; ph, pharynx; su, sucker; te, testis; ut, uterus; vi, vitelline; vl, vitelline duct; vv.
Fig. 7. Metapolystoma falcatum n in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 7. Metapolystoma falcatum n. sp. from Boophis doulioti, neotenic form. a, marginal hooklets 2–7; b, marginal hooklets 8; c, marginal hooklet 1.
Fig. 8 in First record of Metapolystoma (Monogenea: Polystomatidae) from Boophis tree frogs in Madagascar, with the description of five new species
Fig. 8. Ventral view of Metapolystoma ansuanum n. sp. holotype. Abbreviations: eg, egg; gb, genital bulb; gc, genito–intestinal canal; ha, hamuli; hp, haptor; ic, intestinal caecum; mg, Mehlis gland; mo, mouth; oc, oncomiracidium; od, oviduct; oi, oo¨–vitelline canal; o¨o, o¨otype; os, false oral sucker; ov, ovarium; ph, pharynx; su, sucker; sv, semen vesicle; te, testis; ut, uterus; va, vagina; vd, vas deferens; vi, vitelline; vv, vitello–vaginal canal.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.