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Dataset results
1,715 results for “Arabidopsis thaliana; Arabidopsis”
A gene regulatory network involving the class II ERF transcriptional repressors in leaf senescence of Arabidopsis thaliana
GEO Series GSE41053. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
Genome-wide analysis of H3K9me2 in ibm1, kyp, and cmt3 mutants of Arabidopsis thaliana
GEO Series GSE22953. Arabidopsis thaliana. 6 samples. Type: Genome binding/occupancy profiling by genome tiling array.
DNA N6-adenine methylation in Arabidopsis thaliana (methylation)
GEO Series GSE81596. Arabidopsis thaliana. 1 samples. Type: Methylation profiling by high throughput sequencing.
mRNA sequencing of wild type Columbia and serrate-1 globular stage embryos of Arabidopsis thaliana
GEO Series GSE100450. Arabidopsis thaliana. 4 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq profiling in Arabidopsis thaliana wild-type and hrlp-2
GEO Series GSE200390. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Effect of Serendipita indica-infection on the gene expression in wild-type and YUC9 overexpressing Arabidopsis thaliana plants
GEO Series GSE240683. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
METTL4-mediated N6-methyladenine DNA modification regulates thermotolerance in Arabidopsis thaliana
GEO Series GSE237262. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Arabidopsis thaliana and Arabidopsis lyrata degradomes
GEO Series GSE20451. Arabidopsis thaliana; Arabidopsis lyrata. 4 samples. Type: Expression profiling by high throughput sequencing.
Combined stress treatment of high salinity, osmotic pressure and heat to Arabidopsis thaliana
GEO Series GSE39956. Arabidopsis thaliana. 21 samples. Type: Expression profiling by array.
Transcriptomic analysis of rps6 mutants in Arabidopsis thaliana
GEO Series GSE222967. Arabidopsis thaliana. 15 samples. Type: Expression profiling by high throughput sequencing.
TrAP expression in Arabidopsis thaliana lead to global reprogramming of endogenous genes
GEO Series GSE73495. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks [triple_wdh]
GEO Series GSE46759. Arabidopsis thaliana. 13 samples. Type: Expression profiling by array.
Transcriptional profiling of mutants of FdC2 (At1g32550) in Arabidopsis thaliana
GEO Series GSE236421. Arabidopsis thaliana. 16 samples. Type: Expression profiling by array.
Gluconacetobacter diazotrophicus co-cultivated with Arabidopsis thaliana
<p>This repository contains all raw data of proteomic analysis of the assay "<em>Gluconacetobacter diazotrophicus </em>co-cultivated with <em>Arabidopsis thaliana" </em>as zip archives. </p>
Epigenetic regulation of the autonomous pathway mediates the flowering of Arabidopsis thaliana
<p>Studies have shown that plant flowering time is affected by endogenous and exogenous factors, but the role of DNA methylation in flowering still remains unclear. Here, 27 <i>Arabidopsis thaliana</i> populations were used to determine how autonomous pathway gene methylation affects flowering differences by regulating gene expression patterns. DNA methylation analysis, qPCR and transgenic verification were performed. The flowering time of the <i>Arabidopsis</i> populations ranged from 19 to 55 days. Methylation of the coding regions of six upstream genes in the autonomous pathway, <i>FVE</i>,<i> FY</i>,<i> FLD</i>,<i> PEP</i>,<i> HDA5 </i>and<i> PPR 39-1</i>, was significantly correlated with flowering time and relative expression levels (<i>P</i> < 0.05). Expression of <i>FVE</i> and <i>FVE(CS) </i>separately through codon degeneracy substitution (resulting in a reduction in cytosine) led to early flowering (by 8 days and 25 days, respectively). The flowering times of the <i>FVE</i> and <i>FVE(CS)</i> transgenic plants and the Col-0 plants were associated with the number of methylated sites of <i>FVE</i> and <i>FVE(CS)</i>, resulting in the differential expression of <i>FVE</i> and <i>FVE(CS)</i>. Our findings suggest that the methylation of six key upstream transcription factors of the autonomous pathway in <i>Arabidopsis</i> regulates the expression level of these genes, leading to phenotypic differences in flowering.</p>
Crystal structure of the LRR ectodomain from the plant immune receptor kinase SOBIR1 from Arabidopsis thaliana - sulphur SAD datasets
<p>This dataset includes the raw X-ray diffraction images collected on 06.11.2017 at beam line PXIII of the Swiss Light Source (SLS) Villigen, Switzerland. Native (dts_xxx, λ=1.033201 Å, 1 360° wedge at 0.1° oscillation) and redundant sulphur single-wavelength anomalous dispersion (SAD) data (ssad_xxx, λ= 2.078524 Å, 3 360° wedges at 0.1° oscillation) were collected to 1.75 Å and 3.12 Å resolution. The dataset includes a .bz2 archive of the XDS processing for native and sulphur SAD data, data were scaled together in xscale, the resulting xscale.hkl and nat1.hkl contain the integrated intensities and crystallographic structure factors. The corresponding coordinates have been deposited with the Protein Data Bank (http://rcsb.org) with ID 6R1H.</p>
Species wide inventory of Arabidopsis thaliana organellar variation reveals ample phenotypic variation for photosynthetic performance
Open the record for dataset details and reuse information.
Time-Lapse Fluorescence Microphotography, LUC Activity, and Phenotypic Analysis Datasets of Novel Mechanisms of Strigolactone-Induced DWARF14 Degradation in Arabidopsis thaliana
<p><strong><u>Time-Lapse Fluorescence Microphotography Data</u></strong></p> <p>This dataset contains raw files in .lif format from time-lapse fluorescence microphotography experiments, as detailed in Sanchez <em>et al</em>. (2024). Each dataset includes multiple images, and to facilitate interpretation, an additional Excel file titled "<em>Overview of Time-Lapse Fluorescence Microphotography Datasets</em>" is provided. This file includes key information such as plant genotypes and treatment of the plants in each image/position. In most experiments, a control plant (<em>35S:D14-GFP</em>; Col-0) was used for quality control purposes but was excluded from the data analysis.</p> <p><strong><u>LUCIFERASE activity assays </u></strong></p> <p>This dataset contains raw .txt files from LUCIFERASE activity assays as described in Sanchez <em>et al.</em> (2024). The files are organized by figure and include the counts per second (cps) values as measured by the luminometer for each experiment. In addition, each file also provides a brief description including the plant genotypes, treatment details, and the time of treatment application.</p> <p><strong><u>Phenotypic analysis of adult plants </u></strong></p> <p>A .txt file containing measurements of plant height (cm) and the number of branches (RI/RL) for plants analyzed in Sanchez <em>et al</em>. (2024).</p>
Data from: QTL detection power of multi-parental RIL populations in Arabidopsis thaliana
A major goal of today's biology is to understand the genetic basis of quantitative traits. This can be achieved by statistical methods that evaluate the association between molecular marker variation and phenotypic variation in different types of mapping populations. The objective of this work was to evaluate the statistical power of QTL detection of various multi-parental mating designs as well as to assess the reasons for the observed differences. Our study was based on empirical data of 20 Arabidopsis thaliana accessions which have been selected to capture the maximum genetic diversity. The examined mating designs differed strongly with respect to the statistical power to detect QTL. We observed the highest power to detect QTL for the diallel cross with random mating design. The results of our study suggested that performing sibling mating within subpopulations of joint linkage mapping populations has the potential to considerably increase the power for QTL detec tion. Our results, however, revealed that using designs in which more than two parental alleles segregate in each subpopulation increases the power even more.
Targeted Coumarin UHPLC-MS/MS Raw Datasets from Arabidopsis thaliana ecotype Col-0 and Solanum lycopersicum cv. Moneymaker grown Aeroponically on 4 different Phosphate Treatments.
<p>Targeted Coumarin UHPLC-MS/MS Raw Datasets from <em>Arabidopsis thaliana</em> ecotype Col-0 and <em>Solanum lycopersicum</em> cv. Moneymaker, grown Aeroponically on 4 different Phosphate Treatments. Data used for the Bachelor Project Thesis Report for the B.Sc. Biology Program at the Plant Hormone Biology Department of the University of Amsterdam.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.