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FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome. in Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome.
FIGURE 9. Maximum likelihood phylogenetic tree with 100 bootstraps using the aligned 16,409 in Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement
FIGURE 9. Maximum likelihood phylogenetic tree with 100 bootstraps using the aligned 16,409 bp of mitochondrial genomes in Rhinogobius including the two new species, R. estrellae and R. tandikan, with Tridentiger kuroiwae as an outgroup taxon. Material sequenced in the present study are shown with the catalogue numbers of the vouchers (beginning with NSMT-P, URM- P, or WPU-PPC-P) and sequences from the International Nucleotide Sequence Database are shown with the accession numbers (R. cliffordpopei, R. duospilus, and R. leavelli). The scale bar indicates 0.02 substitutions per site. Pictures shown along with the species names are of the specimens with an asterisk.
FIGURE 2. Bayesian Inference phylogenetic tree including species from Brachycephalus didactylus and B in New species of flea-toad, genus Brachycephalus (Anura: Brachycephalidae) from the Atlantic Forest of Espírito Santo, Brazil
FIGURE 2. Bayesian Inference phylogenetic tree including species from Brachycephalus didactylus and B. ephippium groups occurring northward the state of São Paulo, based on 12S + 16S (1,152 bp, 42 terminals) genes, under GTR+G model of nucleotide substitution. We highlight the three phenotypic groups. Tip labels of Brachycephalus puri sp. nov. are in bold. Numbers close to nodes are Bayesian posterior probabilities (BPP). Values below 0.7 not shown.
Figure 3. COI–28S concatenated maximum-likelihood tree reconstructed using GARLI 2.0 in Unmasking Aurelia species in the Mediterranean Sea: an integrative morphometric and molecular approach
Figure 3. COI–28S concatenated maximum-likelihood tree reconstructed using GARLI 2.0. Numbers adjacent to nodes show the bootstrap support values. The scale indicates the number of substitutions per site. Reference sequences from GenBank are in bold.
Figure 1. Bayesian inference tree built using COI, 16S rDNA and ITS2 in Integrated taxonomy reveals multiple species in the Dendrobaena byblica (Rosa, 1893) complex (Oligochaeta: Lumbricidae)
Figure 1. Bayesian inference tree built using COI, 16S rDNA and ITS2 sequences. The numbers indicate the posterior probabilities. The colours show the two main clades.
FIGURE 2. Maximum Likelihood tree inferred from a in The Mediterranean species of genus Loxosceles Heineken & Lowe, 1832 (Araneae Sicariidae): Loxosceles imazighen sp. n. from Morocco and first description of the female of L. mrazig Ribera & Planas, 2009 from Tunisia
FIGURE 2. Maximum Likelihood tree inferred from a concatenated dataset of cox1, H3, 16S and 28S gene fragments. Node numbers indicate bootstrap support values. L. vonwredei, L. spinulosa, Loxosceles sp. and L. speluncarum were used to root the tree. CI = Canary Islands; IS = Israel; MA = Morocco; IP = Iberian Peninsula; PT = Portugal; SA = Sardinia; TN = Tunisia; TR= Turkey.
FIG. 5. Bayesian phylogenetic tree inferred from D2D3 in First record of Bursaphelenchus hildegardae Braasch et al., 2006 (Nematoda) in New Zealand with updated information on morphology, sequencing and a key to species of the eggersi-group
FIG. 5. Bayesian phylogenetic tree inferred from D2D3 gene DNA sequences of Bursaphelenchus hildegardae. Posterior probabilities greater than 50% are given on appropriate clades. Nematode species, GenBank accession numbers and locations are listed for each taxon, if known.
Figure 4 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 4. Heads of Oxybelis transandinus sp. nov. in lateral view. Paratypes QCAZ 15804 (A), 16039 (B), 17096 (C), and 14448 (D). Photographs by G. Pazmiño-Otamendi (A), D. Núñez (B, C), F. Ayala-Varela (D).
Figure 3 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 3. Male holotype (QCAZ 17097, total length = 106.3 cm) of Oxybelis transandinus sp. nov. in dorsal (A) and ventral (B) views. Photographs by M. Mejía-Guerrero. Scale bars = 10 mm.
Figure 1 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 1. Phylogeny of Oxybelis. Maximum clade credibility tree obtained from a phylogenetic analysis of four mitochondrial (12S, 16S, CYTB, ND4) and two nuclear genes (CMOS, PRLR). Posterior probabilities and RAxML rapid-bootstrap support values are shown above and below branches, respectively; for clarity, support values on short branches are not shown. Voucher number and country is indicated for each terminal. Specimens of the new species described in this paper are coloured in red. Outgroup taxa are not shown. GenBank accession numbers along with more detailed locality data are presented in Table 1.
Figure 6 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 6. Specimen of Oxybelis inkaterra from Ecuador (QCAZ 5207) in dorsal (A) and ventral (B) views. Close-up of head in dorsal (C) and ventral (D) views. Photographs by J. Carrión. Scales bars = 10 mm.
Figure 5 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 5. Known distribution of Oxybelis transandinus sp. nov. (circles) and O. inkaterra (triangle) in Ecuador. Star represents type locality of O. transandinus. Specimens sequenced in this study are shown in red.
Figure 2 in Adding missing vines to the tree: multilocus phylogeny of New World vine snakes (Serpentes: Colubridae: Oxybelis), with description of a new species
Figure 2. Male holotype (QCAZ 17097, total length = 106.3 cm) of Oxybelis transandinus sp. nov. in life. General views of body (A, B), and dorsal, ventral and lateral views of head (C). Photographs by M. Rivera. Scale bar (C) = 10 mm.
FIGURE 2. Optimal phylogenetic tree from Maximum Likelihood analyses for the nrITS1–5.8S–ITS2 in Morphology and molecular data of the species of Suillus (Suillaceae, Boletales) associated with Pinus sibirica at the European northeast of Russia
FIGURE 2. Optimal phylogenetic tree from Maximum Likelihood analyses for the nrITS1–5.8S–ITS2 Suillus data. Bootstrap values (BS ≥ 70%) is added to the left of a node as follows: nearest neighbour method / maximum likelihood method. Scale bar indicates expected changes per site. New sequences from the Komi Republic are marked with red blocks. The specimen GenBank accession numbers in parentheses follows the names.
FIGURE. Euphorbia tsihombensis, plants in cultivation at the National Tree Museum Gimborn, The Netherlands. A. detail of the young spination with accessory spines at the base; B. branch in cultivation showing brachyblast leaves; C. branch with young spines and flat leaves with reddish and widely undulating margin. Credits. W.L.A.Hetterscheid (A–C). in Taxonomic changes and new species in Malagasy Euphorbia (Euphorbiaceae)
FIGURE. Euphorbia tsihombensis, plants in cultivation at the National Tree Museum Gimborn, The Netherlands. A. detail of the young spination with accessory spines at the base; B. branch in cultivation showing brachyblast leaves; C. branch with young spines and flat leaves with reddish and widely undulating margin. Credits. W.L.A.Hetterscheid (A–C).
Figure 10. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 10. Amphibioplana onnisi. A, holotype RMNH.VER. 19956.a, photomicrograph of a horizontal section of the left ovary (lo) with tuba (tu) and origin of the left oviduct (lod), testes (t) and vitellaria (vi); B, RMNH.VER. 19956.d, photomicrograph of a sagittal section at the level of the left ovary (lo), with testes (t) and vitellaria (vi); C, CGAS Pla 19.2, photomicrograph of a sagittal section at the level of the left ovary (lo), showing in detail the dorsal (de) and ventral epidermis (ve) with the subepidermal musculature, some vitellaria (vi), and the ventral nerve cord (vnc).
Figure 14 in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 14. Amphibioplana onnisi. Photomicrographs of the copulatory apparatus; sagittal sections. A, holotype RMNH. VER. 19956.a, showing penis bulb (pb), penis papilla (pp), genital atrium (ga), and the gonopore (go) opening into the cupshaped chamber (csc); anterior to the right; B, CGAS Pla 19. 2, showing copulatory bursa (cb), penis bulb, penis papilla and genital atrium; anterior to the right; C, RMNH.VER. 19958.d, showing copulatory bursa with a voluminous mass of sperm (s) in its lumen, penis bulb, penis papilla and genital atrium; anterior to the left; D, CGAS Pla 19.1b, showing copulatory bursa with sperm in its lumen, penis bulb, penis papilla and genital atrium; anterior to the left; E, CGAS Pla 24.5, sagittal section showing the proximal tract of the bursal canal (bc) with its diaphragm-like protrusion (bcd) into the copulatory bursa; anterior to the left; F, CGAS Pla 22. 6, transverse section showing the penis papilla with the two vasa deferentia (vd) running parallel before their fusion to form the ejaculatory duct.
Figure 3. Amphibioplana onnisi. A in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 3. Amphibioplana onnisi. A single, curled up specimen from under a stone in the Grutta 'e Pauli Cave. Scale bar not available.
Figure 9. Amphibioplana onnisi. A, RMNH.VER. 19956.d in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 9. Amphibioplana onnisi. A, RMNH.VER. 19956.d, photomicrograph of a sagittal section of the prepharyngeal region, showing the brain (b), the anterior intestinal branch (aib), the most anterior testes (t) and vitellaria (vi) and the left ovary (lo); B, photograph of a preserved specimen from the Grutta 'e Pauli Cave in ventral view, showing the vitellaria (vi), testes (t), pharynx (ph), and copulatory apparatus (ca).
Figure 8 in Amphibioplanidae: a new branch and family on the phylogenetic tree of the triclad flatworms (Platyhelminthes: Tricladida), represented by a species from Sardinian caves with a remarkable lifestyle
Figure 8. Amphibioplana onnisi. Photomicrographs of the pharynx, sagittal sections. A, CGAS Pla 19.2, oesophageal protrusion (oep) and convoluted tract of the pharynx (cph); anterior to the right; B, RMNH.VER. 19956.c, oesophageal protrusion (oep), also showing xanthophil (xg) and erythrophil (eg) secretions in the pharynx; anterior to the left.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.