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1,271 results for “tropical forest”
Data from: Mean annual temperature influences local fine root proliferation in tropical montane wet forest
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Effects of insect herbivory on seedling mortality in restored and remnant tropical forest
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Data from: Rules of thumb for predicting tropical forest recovery
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Data from: Effects of dispersal‐ and niche‐based factors on tree recruitment in tropical wet forest restoration
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Data from: Local tropical forest restoration strategies affect tree recruitment more strongly than does landscape forest cover
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Data from: Tropical forest restoration enriches vascular epiphyte recovery
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Data from: Leaf litter arthropod responses to tropical forest restoration
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Proximity and abundance of mother trees affects recruitment patterns in a long-term tropical forest restoration study
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Data from: Reduced aboveground tree growth associated with higher arbuscular mycorrhizal fungal diversity in tropical forest restoration
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Data from: Litterfall and nutrient dynamics shift in tropical forest restoration sites after a decade of recovery
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Figure 4 in Three new Mexican species of the endemic Athysanini leafhopper genus Devolana DeLong (Hemiptera: Cicadellidae) from the tropical dry forest
Figure 4. Map of distribution of the genus Devolana in Mexico.
Fig. 6 in Camerobiid mites (Acariformes: Raphignathina: Camerobiidae) inhabiting epiphytic bromeliads and soil litter of tropical dry forest with analysis of setal homology in the genus Neophyllobius
Fig. 6. Neophyllobius tescalicola sp. nov., ♀, holotype. A. Palp. B. Subcapitulum. C. Dorsal idiosoma. D. Ventral idiosoma. E. Trochanter–tibia of leg I. F. Tarsus I.
Fig. 3 in Camerobiid mites (Acariformes: Raphignathina: Camerobiidae) inhabiting epiphytic bromeliads and soil litter of tropical dry forest with analysis of setal homology in the genus Neophyllobius
Fig. 3. Schematic leg setations of Neophyllobius cibyci sp. nov. A–D. ♀, holotype. A. Trochanter–tibia of leg I. B. Trochanter–tibia of leg II. C. Trochanter–tibia of leg III. D. Trochanter–tibia of leg IV. E–H. ♁, paratype (CNAC009238). E. Trochanter–tibia of leg I. F. Trochanter–tibia of leg II. G. Trochanter–tibia of leg III. H.Trochanter–tibia of leg IV. I–L. Protonymph, paratype (CNAC009241). I. Trochantertibia of leg I. J. Trochanter–tibia of leg II. K. Trochanter–tibia of leg III. L. Trochanter–tibia of leg IV. M–O. Larva, paratype (CNAC009242). M. Trochanter–tibia of leg I. N. Trochanter–tibia of leg II. O. Trochanter–tibia of leg III.
Increased importance of terrestrial vertebrate seed dispersal in tropical logged forests
<b>Description: </b><p>A large seed dispersal experiement combining seed tracking and camera trapping at ten forest sites along a wide gradient of historical logging disturbance with AGB ranging between 4.7 and 614.0 Mg ha-1, all part of the established SAFE mammal survey network. Each experiment was run for a consecutive five days using experimental seeds with different hardness (fleshy vs hard) and size (large vs small). Each seed was tracked with a spool.</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/177"><b>Resilience of Tropical Forest Ecosystem Processes to the Interactive Effects of El Nino and Forest Disturbance</b></a></p><p><b>Funding: </b>These data were collected as part of research funded by: </p><ul><li>Natural Environment Research Council (Directed grant, NE/P00363X/1, <a href="https://gtr.ukri.org/projects?ref=NE%2FP00363X%2F1">https://gtr.ukri.org/projects?ref=NE%2FP00363X%2F1</a>)</li></ul><p>This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.</p><p></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=3901735">here</a></p><p><b>Files: </b>This consists of 1 file: template_seed_experiment_LanQieJan9_v2.xlsx</p><p><b>template_seed_experiment_LanQieJan9_v2.xlsx</b></p><p>This file contains dataset metadata and 2 data tables:</p><ol><li><p><b>Seed fate</b> (described in worksheet Seed fate)</p><p>Description: seed fate and removal distance of 12000 experimental seeds of different treatments at all sites</p><p>Number of fields: 14</p><p>Number of data rows: 12000</p><p>Fields: </p><ul><li><b>seed.id</b>: Seed ID (Field type: id)</li><li><b>Grid</b>: Experimental site ID, with the same Grid identifier used in the core SAFE project small mammal trapping work -- see SAFE dataset 256 "CORE SAFE PROJECT SMALL MAMMAL TRAPPING DATA" (Field type: id)</li><li><b>Point</b>: experimental points, selected from the camera trap points in SAFE gazetteer (Field type: location)</li><li><b>Day</b>: The day of the seed outcome. Each experimental point was set up on Day 1 and checked on Day 2-6. This numeric variable is used for temporal analysis. For treating Day as a random effect, an additional "date" label can be created by pasting Grid and Day. (Field type: numeric)</li><li><b>type</b>: Experiment seed type. OP = oil palm fruit, PK1 = single pumpkin seed, PK10 = pumpkin seed cluster of 10, PK20 = pumpkin seed cluster of 20, PT = pistachio nut. For analysis, these were classified as fleshy (OP) vs hard (other seeds), and large (> 10 g; OP, PK10, PK20) vs small (< 10 g; PT, PK1). (Field type: categorical)</li><li><b>trmt</b>: Experiment treatment. Control = seeds accessible by all animals, Cage = exclosure cage treatment with 10x10cm entrances where large vertebrates were excluded (Field type: categorical)</li><li><b>Distance</b>: Seed removal distance (Field type: numeric)</li><li><b>Bearing</b>: Compass bearing of the removed seed from experimental point (Field type: numeric)</li><li><b>Location</b>: Location of removed seed. Free text can be grouped into categories for analysis. (Field type: comments)</li><li><b>fate</b>: Seed fate. Untouched = intact and not moved. Uneaten = removed but uneaten (dispersed). Eaten = eaten or partially eaten. Unknown = seed dragged into burrows, nests or up trees with seed fate unknown, presumed eaten in analsysis to be conservative about seed dispersal (Field type: categorical)</li><li><b>Day.3</b>: Fate of dispersed seeds on subsequent days, Day.3 - Day.6, where applicable, e.g. a seed dispersed on Day 4 would only be monitored on Day 5 and Day 6. Also, not all dispersed seeds could be practically monitored. (Field type: categorical)</li><li><b>Day.4</b>: Fate of dispersed seeds on subsequent days, Day.3 - Day.6, where applicable, e.g. a seed dispersed on Day 4 would only be monitored on Day 5 and Day 6. Also, not all dispersed seeds could be practically monitored. (Field type: categorical)</li><li><b>Day.5</b>: Fate of dispersed seeds on subsequent days, Day.3 - Day.6, where applicable, e.g. a seed dispersed on Day 4 would only be monitored on Day 5 and Day 6. Also, not all dispersed seeds could be practically monitored. (Field type: categorical)</li><li><b>Day.6</b>: Fate of dispersed seeds on subsequent days, Day.3 - Day.6, where applicable, e.g. a seed dispersed on Day 4 would only be monitored on Day 5 and Day 6. Also, not all dispersed seeds could be practically monitored. (Field type: categorical)</li></ul></li><li><p><b>Camera trap records</b> (described in worksheet Camera trap records)</p><p>Description: For each visit to seed experiment by animals recorded by camera traps, we recorded the functional group (large vertebrate or small vertebrate) and seed activity (eating or moving)</p><p>Number of fields: 12</p><p>Number of data rows: 2594</p><p>Fields: </p><ul><li><b>Grid</b>: Experimental site ID, with the same Grid identifier used in the core SAFE project small mammal trapping work -- see SAFE dataset 256 "CORE SAFE PROJECT SMALL MAMMAL TRAPPING DATA" (Field type: id)</li><li><b>Point</b>: experimental points, selected from the camera trap points in SAFE gazetteer (Field type: location)</li><li><b>Day</b>: The day of the camera trap record. Each experimental point was set up on Day 1 and checked on Day 2-6. This numeric variable is used for temporal analysis. For treating Day as a random effect, an additional "date" label can be created by pasting Grid and Day. (Field type: numeric)</li><li><b>trmt</b>: Experiment treatment. Control = seeds accessible by all animals, Cage = exclosure cage treatment with 10x10cm entrances where large vertebrates were excluded (Field type: categorical)</li><li><b>func.group</b>: functional group of the seed visitor (Field type: categorical)</li><li><b>animal.comment</b>: animal species if possible to identify on photos, with some level of uncertainty (Field type: taxa)</li><li><b>visit.number</b>: visit number of the apparent repeated visits by the same animal, with some level of uncertainty (Field type: numeric)</li><li><b>PIT.tag</b>: the PIT tag number of tagged animals entering cage, detected by the antenna and recorded by the data logger (Field type: id)</li><li><b>estimated.body.size</b>: body size estimate from photos, in mm, with some level of uncertainty (Field type: comments)</li><li><b>activity</b>: observed interaction with seeds, with details in the next column. For analysis, "investigate" was not considered an active interaction. (Field type: categorical)</li><li><b>activity.comment</b>: detailed comments on the activity (Field type: comments)</li><li><b>seed.type</b>: the seed type(s) interacted with, if possible to determine, with some level of uncertainty (Field type: categorical)</li></ul></li></ol><p><b>Date range: </b>2017-03-01 to 2017-10-31</p><p><b>Latitudinal extent: </b>4.6881 to 4.7519</p><p><b>Longitudinal extent: </b>116.9633 to 117.5934</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div> -  Animalia <br> -  -  Chordata <br> -  -  -  Mammalia <br> -  -  -  -  Rodentia <br> -  -  -  -  -  Muridae <br> -  -  -  -  -  -  <i>Maxomys</i> <br> -  -  -  -  -  -  -  <i>Maxomys surifer</i> <br> -  -  -  -  -  -  -  <i>Maxomys rajah</i> <br> -  -  -  -  -  -  <i>Sundamys</i> <br> -  -  -  -  -  -  -  <i>Sundamys muelleri</i> <br> -  -  -  -  -  -  <i>Rattus</i> <br> -  -  -  -  -  -  -  <i>Rattus exulans</i> <br> -  -  -  -  -  -  <i>Chrotomys</i> <br> -  -  -  -  -  -  -  <i>Chrotomys whiteheadi</i> (as homotypic_synonym: <i>Maxomys whiteheadi</i>)<br> -  -  -  -  -  -  <i>Leopoldamys</i> <br> -  -  -  -  -  -  -  <i>Leopoldamys sabanus</i> <br> -  -  -  -  -  Sciuridae <br> -  -  -  -  -  -  <i>Callosciurus</i> <br> -  -  -  -  -  -  -  <i>Callosciurus notatus</i> <br> -  -  -  -  -  -  -  <i>Callosciurus adamsi</i> <br> -  -  -  -  -  -  <i>Lariscus</i> <br> -  -  -  -  -  -  -  <i>Lariscus hosei</i> <br> -  -  -  -  -  -  <i>Sundasciurus</i> <br> -  -  -  -  -  -  -  <i>Sundasciurus lowii</i> <br> -  -  -  -  -  -  -  <i>Sundasciurus tenuis</i> <br> -  -  -  -  -  -  -  <i>Sundasciurus hippurus</i> <br> -  -  -  -  -  -  <i>Rhinosciurus</i> <br> -  -  -  -  -  -  -  <i>Rhinosciurus laticaudatus</i> <br> -  -  -  -  -  Hystricidae <br> -  -  -  -  -  -  <i>Hystrix</i> <br> -  -  -  -  -  -  -  <i>Hystrix brachyura</i> <br> -  -  -  -  -  -  -  <i>Hystrix crassispinis</i> <br> -  -  -  -  Scandentia <br> -  -  -  -  -  Tupaiidae <br> -  -  -  -  -  -  <i>Tupaia</i> <br> -  -  -  -  -  -  -  <i>Tupaia tana</i> <br> -  -  -  -  -  -  -  <i>Tupaia gracilis</i> <br> -  -  -  -  -  -  -  <i>Tupaia glis</i> <br> -  -  -  -  -  -  -  <i>Tupaia minor</i> <br> -  -  -  -  -  -  -  <i>Tupaia dorsalis</i> <br> -  -  -  -  Artiodactyla <br> -  -  -  -  -  Suidae <br> -  -  -  -  -  -  <i>Sus</i> <br> -  -  -  -  -  -  -  <i>Sus barbatus</i> <br> -  -  -  -  -  Tragulidae <br> -  -  -  -  -  -  <i>Tragulus</i> <br> -  -  -  -  -  -  -  <i>Tragulus napu</i> <br> -  -  -  -  Erinaceomorpha <br> -  -  -  -  -  Erinaceidae <br> -  -  -  -  -  -  <i>Echinosorex</i> <br> -  -  -  -  -  -  -  <i>Echinosorex gymnura</i> <br> -  -  -  -  Carnivora <br> -  -  -  -  -  Viverridae <br> -  -  -  -  -  -  <i>Viverra</i> <br> -  -  -  -  -  -  -  <i>Viverra tangalunga</i> <br> -  -  -  -  -  -  <i>Paguma</i> <br> -  -  -  -  -  -  -  <i>Paguma larvata</i> <br> -  -  -  -  -  Ursidae <br> -  -  -  -  -  -  <i>Helarctos</i> <br> -  -  -  -  -  -  -  <i>Helarctos malayanus</i> <br> -  -  -  -  -  Mustelidae <br> -  -  -  -  -  -  <i>Martes</i> <br> -  -  -  -  -  -  -  <i>Martes flavigula</i> <br> -  -  -  Reptilia <br> -  -  -  -  Squamata <br> -  -  -  -  -  Gekkonidae <br> -  -  -  -  -  Scincidae <br> -  -  -  Aves <br> -  -  -  -  Columbiformes <br> -  -  -  -  -  Columbidae <br> -  -  -  -  -  -  <i>Chalcophaps</i> <br> -  -  -  -  Galliformes <br> -  -  -  -  -  Phasianidae <br> -  -  -  -  -  -  <i>Lophura</i> <br> -  -  -  -  -  -  -  <i>Lophura ignita</i> <br> -  -  -  -  -  -  <i>Argusianus</i> <br> -  -  -  -  -  -  -  <i>Argusianus argus</i> <br> -  -  -  -  Passeriformes <br> -  -  -  -  -  Pellorneidae <br> -  -  -  -  -  -  <i>Malacocincla</i> <br> -  -  -  -  -  -  -  <i>Malacocincla malaccensis</i> <br> -  -  -  -  -  -  <i>Malacopteron</i> <br> -  -  -  -  -  -  -  <i>Malacopteron affine</i> <br> -  -  -  -  -  -  <i>Pellorneum</i> <br> -  -  -  -  -  -  -  <i>Pellorneum capistratum</i> <br> -  -  -  -  -  Muscicapidae <br> -  -  -  -  -  -  <i>Trichixos</i> <br> -  -  -  -  -  -  -  <i>Trichixos pyrropygus</i> (as homotypic_synonym: <i>Copsychus pyrropygus</i>)<br> -  -  -  -  -  -  <i>Enicurus</i> <br> -  -  -  -  -  -  -  <i>Enicurus leschenaulti</i> <br> -  -  -  -  -  -  -  <i>Enicurus borneensis</i> <br> -  -  -  -  -  -  <i>Copsychus</i> <br> -  -  -  -  -  -  -  <i>Copsychus stricklandii</i> <br> -  -  -  -  -  -  -  <i>Copsychus stricklandii</i> <br> -  -  -  -  -  -  -  <i>Copsychus malabaricus</i> <br> -  -  -  Amphibia <br> -  -  -  -  Anura <br> -  -  Arthropoda <br> -  -  -  Arachnida <br> -  -  -  -  Araneae <br> -  -  -  Malacostraca <br> -  -  -  -  Decapoda <br> -  -  -  Insecta <br> -  -  -  -  Lepidoptera <br> -  -  -  -  -  Nymphalidae <br> -  -  -  -  -  -  <i>Danaus</i> <br> -  -  -  -  -  -  -  <i>Danaus plexippus</i> <br> -  -  -  -  Lepidoptera <br> -  -  -  -  -  Nymphalidae <br> -  -  -  -  -  -  <i>Danaus</i> <br> -  -  -  -  -  -  -  <i>Danaus plexippus</i> <br> -  -  -  -  Coleoptera <br> -  -  -  -  Phasmida <br> -  -  -  -  Orthoptera <br> -  -  -  -  -  Grasshooper <br> -  -  -  -  -  Gryllidae <br> -  -  -  -  Hymenoptera <br> -  -  -  -  -  Formicidae <br> -  -  Annelida <br> -  -  -  Clitellata <br> -  -  -  -  Arhynchobdellida <br> -  -  -  -  -  Haemadipsidae <br> -  -  -  -  -  -  <i>Haemadipsa</i> <br> -  -  Mollusca <br> -  -  -  Gastropoda <br></div><p></p>
The impacts of tropical forest degradation and fragmentation on ant-plant mutualisms, and consequences for plant community dynamics
<b>Description: </b><p>Myrmecophyte interactions in differing habitats</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/119"><b>The impacts of tropical forest degradation and fragmentation on ant-plant mutualisms, and consequences for plant community dynamics</b></a></p><p><b>Funding: </b>These data were collected as part of research funded by: </p><ul><li>GACR (National, 16-09427S, <a href="NA">NA</a>)</li></ul><p>This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.</p><p></p><p><b>Permits: </b>These data were collected under permit from the following authorities:</p><ul><li>Sabah Biodiversity Council (Research licence NA)</li></ul><p></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=3979296">here</a></p><p><b>Files: </b>This consists of 1 file: M.pearsonii_habitat_comparison_OP_Matrix_MH_August.xlsx</p><p><b>M.pearsonii_habitat_comparison_OP_Matrix_MH_August.xlsx</b></p><p>This file contains dataset metadata and 3 data tables:</p><ol><li><p><b>Branch data</b> (described in worksheet Branch_data)</p><p>Description: Branch data</p><p>Number of fields: 86</p><p>Number of data rows: 611</p><p>Fields: </p><ul><li><b>Tree_code</b>: Tree ID (Field type: location)</li><li><b>Branch_code</b>: Branch code (Field type: id)</li><li><b>Coccids</b>: Number of coccids on br0nches (Field type: numeric interaction)</li><li><b>Brood1</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants1</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates1</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen1</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood2</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants2</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates2</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen2</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood4</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants4</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates4</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen4</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood5</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants5</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates5</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen5</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood6</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants6</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates6</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen6</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood7</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants_7</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates7</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen7</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood8</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants8</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates8</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen8</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood9</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants9</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates9</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen9</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood10</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants10</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates10</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen10</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood11</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants11</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates11</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen11</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood12</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants12</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates12</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen12</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood13</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants13</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates13</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen13</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood14</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants14</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates14</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen14</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood15</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants15</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates15</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen15</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood16</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants16</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates16</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen16</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood17</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants17</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates17</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen17</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood18</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants18</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates18</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen18</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood19</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants19</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates19</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen19</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood20</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants20</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates20</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen20</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Brood21</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Ants21</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>Allates21</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>queen21</b>: Number of ants on branch (Field type: numeric interaction)</li><li><b>damaged_queens</b>: Number of damaged ants (Field type: numeric interaction)</li><li><b>wasp</b>: Number of wasps (Field type: numeric interaction)</li><li><b>Notes</b>: Comments (Field type: comments)</li></ul></li><li><p><b>Tree data</b> (described in worksheet Tree_data)</p><p>Description: Tree data, including soil nutrient profiles</p><p>Number of fields: 23</p><p>Number of data rows: 84</p><p>Fields: </p><ul><li><b>Date</b>: Date of sampling (Field type: date)</li><li><b>Tree</b>: Tree ID (Field type: id)</li><li><b>Tree_code</b>: Tree ID code (Field type: location)</li><li><b>Habitat</b>: Habitat type (Field type: categorical)</li><li><b>Number_ants_first_5_leaves</b>: Number of ants on first 5 leaves (Field type: numeric trait)</li><li><b>DBH</b>: Diametre at breast height (Field type: numeric trait)</li><li><b>Height</b>: Tree height (Field type: numeric trait)</li><li><b>N</b>: Canopy cover (Field type: numeric trait)</li><li><b>S</b>: Canopy cover (Field type: numeric trait)</li><li><b>E</b>: Canopy cover (Field type: numeric trait)</li><li><b>W</b>: Canopy cover (Field type: numeric trait)</li><li><b>Canopy_cover</b>: Canopy cover (Field type: numeric trait)</li><li><b>Leaf_biomass</b>: Leaf biomass (Field type: numeric trait)</li><li><b>Total_branches</b>: Total number of branches (Field type: numeric trait)</li><li><b>Phosphate</b>: Leaf phosphates (Field type: numeric trait)</li><li><b>Nitrate</b>: Leaf nitrates (Field type: numeric trait)</li><li><b>Total_wet_weight</b>: Total soil wet weight (Field type: numeric trait)</li><li><b>Wet_weight_sample</b>: Soil wet weight (sample) (Field type: numeric trait)</li><li><b>Dry_weight_sample</b>: Soil dry weight (sample) (Field type: numeric trait)</li><li><b>pH</b>: Leaf pH (Field type: numeric trait)</li><li><b>Dry_Wet_ratio</b>: Soil wet: dry weight ratio (Field type: numeric trait)</li><li><b>Total_dry_weight</b>: Total soildry weight (Field type: numeric trait)</li><li><b>Density</b>: Soil density (Field type: numeric trait)</li></ul></li><li><p><b>All M.Pearsonii-Herbivory data</b> (described in worksheet All_Pearsonii-Herbivory_data)</p><p>Description: Summarised version of data used for analysis</p><p>Number of fields: 17</p><p>Number of data rows: 86</p><p>Fields: </p><ul><li><b>Date</b>: Date the measurements were taken (Field type: date)</li><li><b>Tree</b>: Tree tag (Field type: id)</li><li><b>Tree_Code</b>: Tree code (Field type: id)</li><li><b>Habitat</b>: Habitat type (Field type: categorical)</li><li><b>Tree_Height_Rank</b>: Tree height rank (Field type: categorical)</li><li><b>Corrected_Leaf_Biomass</b>: Corrected leaf biomass (Field type: numeric trait)</li><li><b>Herbivory</b>: Leaf herbivory (Field type: numeric trait)</li><li><b>Coccids</b>: Coccid abundance (Field type: numeric interaction)</li><li><b>Ant_abundance</b>: Ant abundance (Field type: numeric interaction)</li><li><b>Ant_ranked_abundance</b>: Ant coverage ranked (Field type: categorical)</li><li><b>Brood</b>: Ant abundance (Field type: numeric interaction)</li><li><b>Biomass_height_ratio</b>: Tree biomass to height ratio (Field type: numeric trait)</li><li><b>Coccid_ant_ratio</b>: Coccid to ant ratio (Field type: numeric)</li><li><b>Brood_ant_ratio</b>: Brood to ant ratio (Field type: numeric trait)</li><li><b>Attendence_ratio</b>: Attendence ratio (Field type: numeric)</li><li><b>DomTaxa</b>: Taxa record for the dominant species (Field type: taxa)</li><li><b>Dominant_species</b>: Is there a dominant species? (Field type: categorical interaction)</li></ul></li></ol><p><b>Date range: </b>2016-11-19 to 2017-11-24</p><p><b>Latitudinal extent: </b>4.5000 to 5.0700</p><p><b>Longitudinal extent: </b>116.7500 to 117.8200</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div> -  Plantae <br> -  -  Tracheophyta <br> -  -  -  Magnoliopsida <br> -  -  -  -  Malpighiales <br> -  -  -  -  -  Euphorbiaceae <br> -  -  -  -  -  -  <i>Macaranga</i> <br> -  -  -  -  -  -  -  <i>Macaranga pearsonii</i> <br> -  Animalia <br> -  -  Arthropoda <br> -  -  -  Insecta <br> -  -  -  -  Hymenoptera <br> -  -  -  -  -  Formicidae <br> -  -  -  -  -  -  sp.1 <br> -  -  -  -  -  -  sp.2 <br> -  -  -  -  -  -  sp.4 <br> -  -  -  -  -  -  sp.5 <br> -  -  -  -  -  -  sp.6 <br> -  -  -  -  -  -  sp.7 <br> -  -  -  -  -  -  sp.8 <br> -  -  -  -  -  -  sp.9 <br> -  -  -  -  -  -  sp.10 <br> -  -  -  -  -  -  sp.11 <br> -  -  -  -  -  -  sp.12 <br> -  -  -  -  -  -  sp.13 <br> -  -  -  -  -  -  sp.14 <br> -  -  -  -  -  -  sp.15 <br> -  -  -  -  -  -  sp.16 <br> -  -  -  -  -  -  sp.17 <br> -  -  -  -  -  -  sp.18 <br> -  -  -  -  -  -  sp.19 <br> -  -  -  -  -  -  sp.20 <br> -  -  -  -  -  -  sp.21 <br> -  -  -  -  Hemiptera <br> -  -  -  -  -  Coccidae <br></div><p></p>
Associations between socio-environmental factors and landscape-scale biodiversity recovery in naturally regenerating tropical and subtropical forests
<p class="western"><span><span>Natural regeneration is key for large-scale forest restoration, yet it may lead to different biodiversity outcomes depending on socio-environmental context. We combined the results of a global meta-analysis to quantify how biodiversity recovery in naturally regenerating forests deviates from biodiversity values in reference old-growth forests, with structural equation modeling, to identify direct and indirect associations between socioeconomic, biophysical and ecological factors and deviation in biodiversity recovery at a landscape scale. Low deviation within a landscape means higher chances of multiple sites in naturally regenerating forests successfully recovering biodiversity compared to reference forests. Deviation in biodiversity recovery was directly negatively associated with the percentage of cropland, forest cover, and positively associated with the percentage of urban areas in the surrounding landscape. These three factors mediated the indirect associations with rural population size, recent gross deforestation, time since natural regeneration started, mean annual temperature, mean annual water deficit, road density, land opportunity cost, percentage cover of strictly protected forest areas, and human population variation in the surrounding landscape. We suggest that natural forest restoration should be prioritized in landscapes with both low socioeconomic pressures on land use conversion to pasturelands and urban areas, and high percentage of forest cover.</span></span></p>
Maximizing the value of forest restoration for tropical mammals by detecting three-dimensional habitat associations
<b>Description: </b><p>Species detection data for 28 medium-large mammal species obtained using camera trap methods across a logging-induced degradation gradient. Cameras were deployed using a paired design across 74 sampling locations. Data were used to explore species-habitat associations with LiDAR-derived measures of forest structure.</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/26"><b>Understanding covariation between mammalian diversity and forest carbon across a human-modified tropical landscape</b></a></p><p><b>Funding: </b>These data were collected as part of research funded by: </p><ul><li>NERC (Standard grant, NE/K016407/1, <a href="http://gotw.nerc.ac.uk/list_full.asp?pcode=NE%2FK016407%2F1&classtype=ENRIs&classification=Biodiversity&cookieConsent=A">http://gotw.nerc.ac.uk/list_full.asp?pcode=NE%2FK016407%2F1&classtype=ENRIs&classification=Biodiversity&cookieConsent=A</a>)</li></ul><p>This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.</p><p></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=4010757">here</a></p><p><b>Files: </b>This consists of 1 file: DeereEtAl2020_PNAS.xlsx</p><p><b>DeereEtAl2020_PNAS.xlsx</b></p><p>This file contains dataset metadata and 2 data tables:</p><ol><li><p><b>Site metadata and deployment details</b> (described in worksheet Deployment)</p><p>Description: Details of sampling locations, operational dates and survey effort for each camera trap station (N=126)</p><p>Number of fields: 9</p><p>Number of data rows: 126</p><p>Fields: </p><ul><li><b>Site_ID</b>: Unique alphanumeric identifier of the location camera traps were deployed (Field type: location)</li><li><b>Habitat_Class</b>: Forest condition relative to logging-indiced degradation. Follows Putz and Redford Classification scheme (Putz, Francis E., and Kent H. Redford. "The importance of defining 'forest': tropical forest degradation, deforestation, long‐term phase shifts, and further transitions." Biotropica 42.1 (2010): 10-20) (Field type: categorical)</li><li><b>Latitude</b>: Geographic coordinate of camera trap location (Field type: latitude)</li><li><b>Longitude</b>: Geographic coordinate of camera trap location (Field type: longitude)</li><li><b>Date_On</b>: Date camera traps were deployed (Field type: date)</li><li><b>Time_On</b>: Time camera traps were deployed (Field type: time)</li><li><b>Date_Off</b>: Date camera traps were collected (Field type: date)</li><li><b>Time_Off</b>: Time camera traps were collected (Field type: time)</li><li><b>CTNs</b>: Total survey effort for camera trap station (Field type: numeric)</li></ul></li><li><p><b>Species detection data</b> (described in worksheet Detection)</p><p>Description: Raw camera trap detection data for 28 medium-large mammal species obtained from 126 camera trap stations deployed using a paired design across 74 sampling locations </p><p>Number of fields: 7</p><p>Number of data rows: 29008</p><p>Fields: </p><ul><li><b>Site</b>: Unique alphanumeric identifier of the location camera traps were deployed (Field type: location)</li><li><b>common_name</b>: Mammal species identifier (Field type: taxa)</li><li><b>Sp_ID</b>: Numeric species identifier, used to coerce dataframe into a 4D array (Field type: id)</li><li><b>Site_ID</b>: Numeric site identifier, used to coerce dataframe into a 4D array (Field type: id)</li><li><b>Spatial_Rep</b>: Spatial replicate indicative of the number of camera trap stations deployed at a site. Also used to coerce dataframe into a 4d array (Field type: replicate)</li><li><b>Temporal_Rep</b>: Temporal replicate, each comprising six camera trap nights (Field type: replicate)</li><li><b>Detection</b>: Presence/absence of species during survey period (Field type: abundance)</li></ul></li></ol><p><b>Date range: </b>2014-06-20 to 2017-10-09</p><p><b>Latitudinal extent: </b>4.5536 to 4.8121</p><p><b>Longitudinal extent: </b>117.4122 to 117.7398</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div> -  Animalia <br> -  -  Chordata <br> -  -  -  Mammalia <br> -  -  -  -  Rodentia <br> -  -  -  -  -  Sciuridae <br> -  -  -  -  -  -  <i>Rheithrosciurus</i> <br> -  -  -  -  -  -  -  <i>Rheithrosciurus macrotis</i> <br> -  -  -  -  -  Hystricidae <br> -  -  -  -  -  -  <i>Hystrix</i> <br> -  -  -  -  -  -  -  <i>Hystrix brachyura</i> <br> -  -  -  -  -  -  -  <i>Hystrix crassispinis</i> <br> -  -  -  -  -  -  <i>Trichys</i> <br> -  -  -  -  -  -  -  <i>Trichys fasciculata</i> <br> -  -  -  -  Proboscidea <br> -  -  -  -  -  Elephantidae <br> -  -  -  -  -  -  <i>Elephas</i> <br> -  -  -  -  -  -  -  <i>Elephas maximus</i> <br> -  -  -  -  Carnivora <br> -  -  -  -  -  Viverridae <br> -  -  -  -  -  -  <i>Viverra</i> <br> -  -  -  -  -  -  -  <i>Viverra tangalunga</i> <br> -  -  -  -  -  -  <i>Arctictis</i> <br> -  -  -  -  -  -  -  <i>Arctictis binturong</i> <br> -  -  -  -  -  -  <i>Paradoxurus</i> <br> -  -  -  -  -  -  -  <i>Paradoxurus hermaphroditus</i> <br> -  -  -  -  -  -  <i>Hemigalus</i> <br> -  -  -  -  -  -  -  <i>Hemigalus derbyanus</i> <br> -  -  -  -  -  -  <i>Paguma</i> <br> -  -  -  -  -  -  -  <i>Paguma larvata</i> <br> -  -  -  -  -  Felidae <br> -  -  -  -  -  -  <i>Pardofelis</i> <br> -  -  -  -  -  -  -  <i>Pardofelis marmorata</i> <br> -  -  -  -  -  -  <i>Prionailurus</i> <br> -  -  -  -  -  -  -  <i>Prionailurus bengalensis</i> <br> -  -  -  -  -  -  <i>Neofelis</i> <br> -  -  -  -  -  -  -  <i>Neofelis diardi</i> <br> -  -  -  -  -  Mustelidae <br> -  -  -  -  -  -  <i>Martes</i> <br> -  -  -  -  -  -  -  <i>Martes flavigula</i> <br> -  -  -  -  -  Ursidae <br> -  -  -  -  -  -  <i>Helarctos</i> <br> -  -  -  -  -  -  -  <i>Helarctos malayanus</i> <br> -  -  -  -  -  Herpestidae <br> -  -  -  -  -  -  <i>Herpestes</i> <br> -  -  -  -  -  -  -  <i>Herpestes brachyurus</i> <br> -  -  -  -  -  Mephitidae <br> -  -  -  -  -  -  <i>Mydaus</i> <br> -  -  -  -  -  -  -  <i>Mydaus javanensis</i> <br> -  -  -  -  Primates <br> -  -  -  -  -  Cercopithecidae <br> -  -  -  -  -  -  <i>Macaca</i> <br> -  -  -  -  -  -  -  <i>Macaca fascicularis</i> <br> -  -  -  -  -  -  -  <i>Macaca nemestrina</i> <br> -  -  -  -  -  Hominidae <br> -  -  -  -  -  -  <i>Pongo</i> <br> -  -  -  -  -  -  -  <i>Pongo pygmaeus</i> <br> -  -  -  -  Artiodactyla <br> -  -  -  -  -  Suidae <br> -  -  -  -  -  -  <i>Sus</i> <br> -  -  -  -  -  -  -  <i>Sus barbatus</i> <br> -  -  -  -  -  Tragulidae <br> -  -  -  -  -  -  <i>Tragulus</i> <br> -  -  -  -  -  -  -  <i>Tragulus napu</i> <br> -  -  -  -  -  -  -  <i>Tragulus kanchil</i> <br> -  -  -  -  -  Cervidae <br> -  -  -  -  -  -  <i>Muntiacus</i> <br> -  -  -  -  -  -  -  <i>Muntiacus atherodes</i> <br> -  -  -  -  -  -  -  <i>Muntiacus muntjak</i> <br> -  -  -  -  -  -  <i>Rusa</i> <br> -  -  -  -  -  -  -  <i>Rusa unicolor</i> <br> -  -  -  -  Pholidota <br> -  -  -  -  -  Manidae <br> -  -  -  -  -  -  <i>Manis</i> <br> -  -  -  -  -  -  -  <i>Manis javanica</i> <br> -  -  -  -  Erinaceomorpha <br> -  -  -  -  -  Erinaceidae <br> -  -  -  -  -  -  <i>Echinosorex</i> <br> -  -  -  -  -  -  -  <i>Echinosorex gymnura</i> <br></div><p></p>
Wind creates crown shyness, asymmetry and orientation in a tropical montane oak forest
<p>In a cloud forest dominated by Quercus costaricensis the gap size between the crowns was consistent and crowns were asymmetrical, being elongated perpendicular to the prevailing wind direction. A wind storm of 20 m s-1 removed 1.5% of the leaves, consistent with the idea that wind abrasion shapes tree crowns.</p>
Dataset associated to "Unraveling the relative role of light and water competition between lianas and trees in tropical forests: A vegetation model analysis"
<p>This dataset includes all the codes necessary to reproduce the simulations presented in the paper "Unraveling the relative role of light and water competition between lianas and trees in tropical forests: A vegetation model analysis" published in Journal of Ecology. More precisely, it includes the version of the codes used to generate the results for the vegetation model (ED2), the analysis platform (PEcAn), as well as the meterological drivers (Drivers) and the initial conditions (IC) of the model and the priors and posterior parameter distributions.</p>
Figs 112–117 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 112–117. Male genitalia of Paratischeria tubifex Diškus & Stonis sp. nov. (NHMUK). 112. Lateral view of capsule with phallus removed, paratype (genitalia slide no. 010316170). 113. Socii, paratype (genitalia slide no. 010316172). 114. Uncus, socii and vinculum, ventro-lateral view, paratype (genitalia slide no. 010316169). 115. Same, apex of phallus. 116. Apex of phallus, paratype (genitalia slide no. 010316170). 117. Phallus, general view, holotype (genitalia slide no. 010316168).
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.