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Dataset results
3,688 results for “Computer”
Data from: Scoring thermal limits in small insects using open-source, computer assisted motion detection
<p>Scoring large amounts of thermal tolerance traits live or with recorded video can be time consuming and susceptible to investigator bias, and as with many physiological measurements, there can be trade-offs between accuracy and throughput. Recent studies show that particle tracking is a viable alternative to manually scoring videos, although it may not detect subtle movements, and many of the software options are proprietary and costly. In this study, we present a novel strategy for automated scoring of thermal tolerance videos by inferring motor activity with motion detection using an open-source Python command line application called DIME (Detector of Insect Motion Endpoint). We apply our strategy to both dynamic and static thermal tolerance assays, and our results indicate that DIME can accurately measure thermal acclimation responses, generally agrees with visual estimates of thermal limits, and can significantly increase the throughput over manual methods.</p>
Supporting data for "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer"
<p>This repository contains the supporting data for the publication: "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer".</p>
Computationally defined and in vitro validated putative genomic safe harbour loci for transgene expression in human cells
<p>Selection of the target site is an inherent question for any project aiming for directed transgene integration. Genomic safe harbour (GSH) loci have been proposed as safe sites in the human genome for transgene integration. Although several sites have been characterised for transgene integration in the literature, most of these do not meet criteria set out for a GSH, and the limited set that do have not been characterised extensively. Here, we conducted a computational analysis using publicly available data to identify 25 unique putative GSH loci that reside in active chromosomal compartments. We validated stable transgene expression and minimal disruption of the native transcriptome in three GSH sites <em>in vitro</em> using human embryonic stem cells (hESCs) and their differentiated progeny. Furthermore, for easily targeted transgene expression, we have engineered constitutive landing pad expression constructs into the three validated GSH in hESCs.</p>
Combining graph neural networks and computer vision methods for cell nuclei classification in lung tissue
<p>Database of the article "Combining graph neural networks and computer vision methods for cell nuclei classification in lung tissue ".</p>
Single-atom catalysis in space: Computational exploration of Fischer–Tropsch reactions in astrophysical environments
<p>This supporting material contains:</p> <ul> <li>Cartesian coordinates of the PBE optimized minima and transition states for the reactions under study, in XYZ format.</li> <li>Inputs for the <a href="https://www.cp2k.org/">CP2K</a> and <a href="https://www.crystal.unito.it/">Crystal17</a> packages.</li> <li>Vibrational calculations with all the frequencies.</li> <li>Inputs and outputs for the benchmark study performed with the <a href="https://gaussian.com/">Gaussian16</a> package.</li> </ul>
Predictive neural computations in cerebellar circuits contribute to motor planning and faster behavioral responses in larval zebrafish
<p>This dataset contains raw and processed data along with jupyter notebooks to generate figures in Narayanan et al., 2023. Instructions for navigating through the dataset and for running the analysis codes are in README.pdf.</p>
Computational Data Archive in Support of the Ping-Pong Mechanism for Peptide Bond Formation and Hydrolysis
<p>In search for the goldilocks zone in the chemical space for amino acid oligomerization that is relevant to the emergence of protein-based metabolism, we identified a significant gap in our understanding about how peptide bond is formed and hydrolyzed under ambient aqueous conditions. We identified a six-step mechanism that reproduces the experimentally known experimental barriers. By careful evaluation of a comprehensive set of levels of theory, modelling of solvation effect, and calculation of thermochemical parameters, we established a robust computational model to expand the bulk water focus to interfacial phenomena of atmospheric/hydrospheric and litospheric/hydrospheric boundaries. </p> <p>While we cannot travel back in time billions of years to witness the "birth" of the first macromolecule with pre-biotic relevance, we present the dataset and the corresponding publication in RSC Organic and Biomolecular Chemistry (July 26, 2023 issue) our attempt to establish an unbiased computational platform where we can evaluate experiments and generate experimentally testable ideas.</p>
A computational insight on the aromatic amino acids conjugation with [Cp*Rh(H2O)3]2+ by using the MTD/FMO3 approach.
<p>The zip file contains the 3D coordinates of the optimized structures, obtained by sampling each 1 ps of the EC1, EC2 and EC3 trajectories (MTD and MD calculations) and used as input geometries for FMO3 calculations.</p>
Scaled laboratory experiments of analogue magma intrusion in granular material: X-ray Computed Tomography imagery and displacement data
<p>This data set contains X-ray Computed Tomography (CT) images and surface displacement data of 15 scaled laboratory experiments of analogue magma intrusion in granular material. The experimental methodology and the experimental results were described in detail by Poppe et al. (2019). Displacement data of experiment SPCTIN14 was used by Poppe et al. (2023).<br> When using the experimental imagery or their derivatives please reference at a minimum Poppe et al. (2019) and this data set (Poppe et al., 2023, Zenodo data set).<br> The included explanatory notice reproduces the experimental method and presents the structure and file types contained in this data set.</p>
Umfrage sowie zugehörige erfasste Daten im Rahmen einer Masterarbeit über das Computational und Mathematical Thinking
<p>Die Dateien umfassen einerseits die Items des online Fragebogens und andererseits die bei der durchgeführten Umfrage ermittelten Daten. </p><p>Die Umfrage diente der Evaluation eines von mir im Rahmen meiner Masterarbeit entwickelten Frameworks, einer Definition des Computational Thinking sowie einer selbsterstellten Intervention.</p><p>An der Umfrage nahmen Expert:innen aus der Hochschullehre sowie der Lehre teil, deren Namen nur auf Nachfrage preisgegeben werden. </p>
Halogen-Bond-Based Organocatalysis Unveiled: Computational Design and Mechanistic Insights
<p>Please find the supporting information for the "Halogen-Bond-Based Organocatalysis Unveiled: Computational Design and Mechanistic Insights into Electronically Activated Donor Systems" paper here.</p><p> </p><p>Halogen-Bond-Based Organocatalysis Unveiled: Computational Design and Mechanistic Insights</p><p>Nika Melnyk, 1 Marianne Rica Garcia 1 and Cristina Trujillo 1,2</p><p>1Trinity Biomedical Sciences Institute, School of Chemistry, The University of Dublin, Trinity College, D02 R590 Dublin 2, Ireland</p><p>2Department of Chemistry, University of Manchester, Oxford Road, Manchester, M139PL</p><p>Email: cristina.trujillodelvalle@manchester.ac.uk</p><p> </p><p> </p>
How to Compute Atomistic Insight in DFT clusters: the REG-IQA Approach
<p>Dataset for the paper "How to Compute Atomistic Insight in DFT clusters: the REG-IQA Approach" published to<i> Journal of Chemical Information and Modelling</i>.</p><p>The Dataset contains all the AIMAll calculations for each step of the intrinsic reaction coordinate of the HIV Protease hydrolysis described in the main manuscript and .xlsx files for all the REG-IQA results of the analyses pursued.</p>
3D orthogonal woven carbon fibre fabric and composites - Micro-computed tomography scans
<p>Computed tomography images of a 3D orthogonal woven carbon fibre fabric and composites. Detailed description can be found in the attached metadata files as well as in the associated paper: <a href="https://doi.org/10.1016/j.compositesa.2013.10.004">https://doi.org/10.1016/j.compositesa.2013.10.004</a></p> <p>The sample was used for geometrical analysis and for creating a TexGen model with the subsequent permeability and mechanical modelling.</p>
Computer-Delivered Intervention for Individuals With Obesity and Elevated Anxiety Sensitivity
ClinicalTrials.gov study NCT03917901. IPD Sharing: NO. Countries: 1. Publications: 0.
Clinical Decision Support for Opioid Use Disorders in Medical Settings (COMPUTE 2.0)
ClinicalTrials.gov study NCT04198428. IPD Sharing: NO. Countries: 1. Publications: 3.
Non-Invasive Brain-Computer Interface Combined With Transcranial Electrical Stimulation for Peripheral Facial PalsyStimulation in the Treatment of Peripheral Facial Palsy
ClinicalTrials.gov study NCT07327710. IPD Sharing: NO. Countries: 1. Publications: 7.
Diagnosis of Acute Appendicitis: Low-dose Computed Tomography (CT) Versus Standard-dose CT
ClinicalTrials.gov study NCT00913380. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Access to a Sit-stand Computer Workstation and Back Pain
ClinicalTrials.gov study NCT02146482. IPD Sharing: Not stated. Countries: 1. Publications: 44.
Computer Based Treatment for Cognitive Behavioral Therapy and Cooperative Pain Education and Self-Management
ClinicalTrials.gov study NCT05204576. IPD Sharing: NO. Countries: 1. Publications: 1.
Determination of Fractional Flow Reserve by Anatomic Computed Tomographic Angiography
ClinicalTrials.gov study NCT01233518. IPD Sharing: NO. Countries: 1. Publications: 3.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.