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FIGURE 3b in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 3b. Scatterplot of the discriminant analysis (DA) on female morphometric variables measured in Branchinecta orientalis populations. For abbreviations of sites see table 1.

FIGURE 2 in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 2. Definition of morphometric characteristics in Branchinecta orientalis (by author based on literature source: Amat, 1980; Timms, 2012).

FIGURE 4 in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 4. Maximum Likelihood inference tree based on the COI sequences of Branchinecta species. The first and the second numbers above nodes represent BI and ML supports respectively.

FIGURE 3a in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 3a. Scatterplot of the discriminant analysis (DA) on male morphometric variables measured in Branchinecta orientalis populations. For abbreviations of sites see table 1.

FIGURE 1 in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 1. Map showing the locations of Branchinecta orientalis sampling sites. For abbreviations, see Table 1.

FIGURE 5 in Morphometric and preliminary genetic characteristics of Branchinecta orientalis populations from Iran (Crustacea: Anostraca)

FIGURE 5. Haplotype network based on the COI gene with labels for the six Branchinecta orientalis populations. Abbreviations refer to the localities.

FIGURE 6 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 6. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from male (n = 55) Macrhybopsis boschungi and M. tomellerii.

FIGURE 3 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 3. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from female (n = 153) Macrhybopsis boschungi, M. etnieri, M. pallida, M. tomellerii and M. hyostoma from Mississippi River drainage.

FIGURE 5 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 5. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from female (n = 84) Macrhybopsis boschungi and M. tomellerii.

FIGURE 8 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 8. Tertiary eustatic changes in sea level. Meters above or below present sea level are tentative. From Vail & Hardenbol (1979); reproduced in Gilbert (1987: 37, fig. 5).

FIGURE 2 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 2. Distribution of southeastern species of Macrhybopsis east of the Mississippi River. Individual species are identified by symbol and color. Circles with half blue and half red represent locations where M. boschungi and M. etnieri occur syntopically.

FIGURE 4 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 4. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from male (n = 93) Macrhybopsis boschungi, M. etnieri, M. pallida, M. tomellerii, and M. hyostoma from Mississippi River drainage.

FIGURE 1 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species

FIGURE 1. Species of Macrhybopsis aestivalis species complex from eastern North America. A) Macrhybopsis hyostoma, UAIC 11060.03, Female, 34 mm SL, Alabama, Limestone County, Elk River, 28 September 1994. B) Macrhybopsis boschungi, UAIC 10845.03, Female, 50 mm SL, Alabama, Dallas County, Cahaba River, 12 July 1993. C) Macrhybopsis etnieri, UAIC 11053.01, Female, 44 mm SL, Alabama, Bibb County, Cahaba River, 24 June 1994. D) Macrhybopsis pallida, UAIC 10855.04, Female, 36 mm SL, Alabama, Escambia County, Conecuh River, 15 July 1993. E) Macrhybopsis tomellerii, UAIC 11364.03, Female, 51 mm SL, Mississippi, Covington County, Pascagoula River drainage, 18 February 1994.

opencc-by-4.0Jun 2017View details →

Supplemental Data to: Variation in recombination rate and its genetic determinism in sheep populations

Supplemental Data to reproduce the analysis of Variation in recombination rate and its genetic determinism  in sheep (Ovis Aries) populations from combining multiple genome-wide datasets. Morgane Petit*, Jean-Michel Astruc✝, Julien Sarry*, Laurence Drouilhet*,  Stéphane Fabre*,  Carole Moreno*, Bertrand Servin* *INRA, Génétique, Physiologie et Systèmes d’Elevage, F-31326 Castanet-Tolosan, France ✝Institut de l’Elevage, F-31326 Castanet-Tolosan, France Abstract Recombination is a complex biological process that results from a cascade of multiple events during meiosis. Understanding the genetic determinism of recombination can help to understand if and how these events are interacting. To tackle this question, we studied the patterns of recombination in sheep, using multiple approaches and datasets. We constructed male recombination maps in a dairy breed from the south of France (the Lacaune breed) at a fine scale by combining meiotic recombination rates from a large pedigree genotyped with a 50K SNP array and historical recombination rates from a sample of unrelated individuals genotyped with a 600K SNP array. This analysis revealed recombination patterns in sheep similar to other mammals but also genome regions that have likely been affected by directional and diversifying selection. We estimated the average recombination rate of Lacaune sheep at 1.5 cM/Mb, identified about 50,000 crossover hotspots on the genome and found a high correlation between historical and meiotic recombination rate estimates. A genome-wide association study revealed two major loci affecting inter-individual variation in recombination rate in Lacaune, including the RNF212 and HEI10 genes and possibly 2 other loci of smaller effects including  the KCNJ15  and FSHR genes. Finally, we compared our results to those obtained previously in a distantly related population of domestic sheep, the Soay. This comparison revealed that Soay and Lacaune males have a very similar distribution of recombination along the genome and that the two datasets can be combined to create more precise male meiotic recombination maps in sheep. Despite their similar recombination maps, we show that Soay and Lacaune males exhibit different heritabilities and QTL effects for inter-individual variation in genome-wide recombination rates.

FIGURE 3 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran

FIGURE 3. Bayesian inference phylogenetic tree of Tropiocolotes populations in southern Iran using two mtDNA genes (COI and 16S). Tropiocolotes steudneri sensu stricto from Egypt was used as the outgroup. Numbers next to the nodes are the MP and ML bootstrap values and BI posterior probabilities (MP/ML/BI).

FIGURE 1 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran

FIGURE 1. Map of southern Iran showing sampling localities for the populations of Tropicolates. Blue circles denote T. naybandensis and red circles denote Tropiocolotes cf. steudneri. The type locality of T. naybandensis is marked with a star.

FIGURE 2 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran

FIGURE 2. Ordination of principal component 1 (PC1) against principal component 2 (PC2) for differentiated characters of the genus Tropiocolotes in southern Iran.

opennotspecifiedDec 2015View details →

Figure 4 in Data from: Genetic isolation between two recently diverged populations of a symbiotic fungus

Figure 4 Cesults cf tSe randcmizaticn test fcr (a) SigSer meicfaunal taxa and (b) nematcde genera. Standard deviations are scown as vertical bars. Tce sample sizes witc an asterisk reveal tce significant differences of tce Scannon-Wiener index from tce otcer sample sizes.

opennotspecifiedDec 2015View details →

Figure 3 in Data from: Genetic isolation between two recently diverged populations of a symbiotic fungus

Figure 3 Scatterplcts by ccrrespcndence analysis cf (a) SigSer meicfaunal taxa and (b) nematcde genera. Tce abundance data cave been square root transformed.