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Supplementary material 6 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Linkage disequilibrium:
Supplementary material 4 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Observed and expected heterozygosity:
Supplementary material 3 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Pearson's Chi-squared test for Hardy-Weinberg equilibrium:
Supplementary material 2 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Genotype accumulation curve:
Supplementary material 1 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Map of sampling locations:
Figure 5 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Figure 5 Neighbor-joining tree (K2P) of Afrotropical species of Cotesia in the Barcoding of Life Data System (BOLD) with over 500 base pairs; data accessed on September 2017. Specimens named as "Cotesia jft52" in BOLD actually belong to the species Cotesia icipe (cluster highlighted in Yellow), and specimens named as "Cotesia jft68" in BOLD actually belong to the species Cotesia chrysippi (Viereck, 1911).
Supplementary material 1 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Tree for Barcode Index Number – BOLD:ABZ7318 :
Figure 4 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Figure 4 Neighbor-joining tree (K2P) of all specimens in the Barcoding of Life Data System (BOLD) currently associated with BIN BOLD:ABZ7318 (for explanation on the BIN concept see Methods of this paper). The cluster highlighted in Yellow in the tree shows the specimens considered in the present paper as Cotesia icipe.
Figure 3 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Figure 3 Known distribution of Cotesia icipe in the Afrotropical region. Blue dots show distribution based on specimens of the type series (Kenya), red dots show distribution based on specimens with DNA barcodes matching those of the Kenya series.
Figure 1 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Figure 1 Cotesia icipe, female holotype. A Habitus lateral B Wings C Hind leg, hypopygium and ovipositor D Head frontal E Head and mesosoma dorsal F Propodeum and metasoma dorsal.
Figure 2 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Figure 2 Cotesia icipe, male paratype. A Habitus lateral B Head and mesosoma dorsal C Head frontal D Wings E Propodeum and metasoma dorsal.
Figure 9 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 9 - Restriction fragments of COI PCR products (restriction enzyme, species): 1 AhlI, E. maura or E. testudinaria 2 AhlI, E. integriceps 3 PsiI, E. maura or E. testudinaria 4 PsiI, E. integriceps 5 Bst2UI, E. maura or E. testudinaria 6 Bst2UI, E. integriceps; M, 100 bp DNA ladder.
Figure 8 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 8 - Neighbor joining analysis of COI gene sequences from Eurygaster species. * - sequences obtained in this work.
Figure 5 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 5 - Species of the genus Eurygaster Laporte, general view: A E. integriceps (Puton) B E. maura L. C E. testudinaria (Geoffroy) D E. dilaticollis Dohrn. Specimens A–C were collected in the Voronezh Region; specimen D was from the Teberda Nature Reserve, Caucasus.
Figure 2 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 2 - Range of Eurygaster maura (Linnaeus, 1758) (after Göllner-Scheiding 2006 and Vinokurov et al. 2010).
Figure 7 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 7 - Structural details of Eurygaster Laporte species (a, clypeus; b, jugal plate): A E. austriaca (Schrank), head, dorsal view B E. integriceps (Puton), dorsal view C E. integriceps, aedeagus D E. maura L., aedeagus E E. testudinaria (Geoffroy), aedeagus (after Golub, 1980, with changes).
Figure 6 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 6 - Head, anterior view (A, B) and female median genital plates (C, D) of E. maura L. (A, C) and E. testudinaria (Geoffroy) (B, D).
Figure 3 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 3 - Range of Eurygaster testudinaria (Geoffray, 1758) (after Göllner-Scheiding 2006 and Vinokurov et al. 2010).
Figure 4 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 4 - Range of Eurygaster dilaticollis Dohrn, 1860 (after Göllner-Scheiding 2006 and Vinokurov et al. 2010).
Figure 1 from: Syromyatnikov MY, Golub VB, Kokina AV, Soboleva VA, Popov VN (2017) DNA barcoding and morphological analysis for rapid identification of most economically important crop-infesting Sunn pests belonging to Eurygaster Laporte, 1833 (Hemiptera, Scutelleridae). ZooKeys 706: 51-71. https://doi.org/10.3897/zookeys.706.13888
Figure 1 - Range of Eurygaster integriceps (Puton, 1881) (after Göllner-Scheiding 2006 and Vinokurov et al. 2010).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.