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1,456
datasets available to search
ShareScore release 0.7.1
Dataset results
1,456 results for “parallelism”
Massively parallel reporter assay for programmed ribosomal frameshifting on designed sequence libraries
GEO Series GSE145684. Homo sapiens. 4 samples. Type: Other.
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
GEO Series GSE52441. Brachypodium distachyon. 19 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Parallel analysis of RNA ends (PARE) sequencing of Barley CI 16151 and fast-neutron-derived, immune-compromised mutants infected with the powdery mildew fungus (Blumeria graminis f. sp. hordei; isolat
GEO Series GSE116691. Hordeum vulgare; Blumeria hordei. 5 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Specific Parallel Analysis of RNA End and Small RNA libraries
GEO Series GSE116376. Arabidopsis thaliana. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Multiple parallel cell lineages in the developing mammalian cerebral cortex
GEO Series GSE234305. Mustela putorius furo; Mustela putorius. 26 samples. Type: Expression profiling by high throughput sequencing.
Using a modular massively parallel reporter assay to discover context-specific regulatory grammars in type 2 diabetes - Tovar library
GEO Series GSE279071. synthetic construct; Rattus norvegicus. 6 samples. Type: Other.
Enabling multiplexed CRISPR/Cas9 screening via massively parallel in-library ligation
GEO Series GSE149945. Homo sapiens; Escherichia coli. 9 samples. Type: Other.
A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women (mRNA Profiling)
GEO Series GSE49839. Homo sapiens. 22 samples. Type: Expression profiling by array.
Massively parallel identification of functionally consequential noncoding genetic variants in undiagnosed rare disease patients
GEO Series GSE185795. Homo sapiens; other sequences. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Heterogeneous phenotypes of Pten-null hepatocellular carcinoma in hepatitis B virus transgenic mice parallels liver lobule zonal gene expression patterns
GEO Series GSE172629. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
An in vivo massively parallel platform for deciphering tissue-specific regulatory function [DNA]
GEO Series GSE223293. Mus musculus; Homo sapiens. 43 samples. Type: Other.
Genome-wide Lsd1 chromatin occupancy in myoblast C2C12 cells by chromatin immunoprecipitation using an Lsd1 antibody followed by massive parallel sequencing
GEO Series GSE98134. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
GEO Series GSE15353. Homo sapiens. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
MP3-seq: Massively parallel measurement of protein-protein interactions by sequencing
GEO Series GSE271790. Saccharomyces cerevisiae. 36 samples. Type: Other.
Supplementary Data: Cloud-based multi-dimensional parallel dynamic programming algorithm for a hydropower station system
<p>The files in this record contain data for cloud-based multi-dimensional parallel dynamic programming algorithm for a hydropower station system considered for publication in Water Resources Research.</p> <p>The files consist of:</p> <ul> <li>cascade reservoir system data;</li> <li>Source code and results of the parallel dynamic programming algorithm program on the physical machine;</li> <li>Source code and results of the parallel dynamic programming algorithm program on the cloud virtual machine;</li> </ul>
Tagged formatted datasets for 'Genetically Optimized Massively Parallel Binary Neural Networks for Intrusion Detection Systems'
<p>Tagged formatted datasets used in 'Genetically Optimized Massively Parallel Binary Neural Networks for Intrusion Detection Systems' T.Murovič, A.Trost.</p>
Quantifying Parallel Evolution
<p>A repository containing processed data for the preprint Quantifying Parallel Evolution</p>
Raw Data of SLR for Parallelization, Modeling, and Performance Prediction in the Multi-/Many Core Area
<p>Contains the raw data and paper list of the SLR performed for the following publication:</p> <p>Parallelization, Modeling, and Performance Prediction in the Multi-/Many Core Area: A Systematic Literature Review</p>
Data for paper StarVZ: Performance Analysis of Task-Based Parallel Applications
<p>This is the companion data of the paper <em>StarVZ: Performance Analysis of Task-Based Parallel Applications</em> submitted to Journal of Statistical Software at Oct 2020.</p>
Data from: Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci
Background: The adaptive immune system generates a remarkable range of antigen-specific T-cell receptors (TCRs), allowing the recognition of a diverse set of antigens. Most of this diversity is encoded in the complementarity determining region 3 (CDR3) of the β chain of the αβ TCR, which is generated by somatic recombination of noncontiguous variable (V), diversity (D), and joining (J) gene segments. Deletion and non-templated insertion of nucleotides at the D-J and V-DJ junctions further increases diversity. Many of these gene segments are annotated as non-functional owing to defects in their primary sequence, the absence of motifs necessary for rearrangement, or chromosomal locations outside the TCR locus. Methods: We sought to utilize a novel method, based on high-throughput sequencing of rearranged TCR genes in a large cohort of individuals, to evaluate the use of functional and non-functional alleles. We amplified and sequenced genomic DNA from the peripheral blood of 587 healthy volunteers using a multiplexed polymerase chain reaction assay that targets the variable region of the rearranged TCRβ locus, and we determined the presence and the proportion of productive rearrangements for each TCRβ V gene segment in each individual. We then used this information to annotate the functional status of TCRβ V gene segments in this cohort. Results: For most TCRβ V gene segments, our method agrees with previously reported functional annotations. However, we identified novel non-functional alleles for several gene segments, some of which were used exclusively in our cohort to the detriment of reported functional alleles. We also saw that some gene segments reported to have both functional and non-functional alleles consistently behaved in our cohort as either functional or non-functional, suggesting that some reported alleles were not present in the population studied. Conclusions: In this proof-of-principle study, we used high-throughput sequencing of the TCRβ locus of a large cohort of healthy volunteers to evaluate the use of functional and non-functional alleles of individual TCRβ V gene segments. With some modifications, our method has the potential to be extended to gene segments in the α, γ, and δ TCR loci, as well as the genes encoding for B-cell receptor chains.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.