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1,221 results for “Aggregators”
Molecular Dynamics trajectories and portable binary run input (TPR) files for the dual role of anionic lipids in amyloid aggregation
<h1>About this repository</h1> <p>We conducted Coarse-Grained molecular dynamics simulations to study the aggregation of the amyloid-beta fragment, Aβ16-22 (K16LVFFAE22), on mixed lipid bilayers composed of POPC and POPS. Three bilayer compositions were examined: 0% PS-100% PC, 10% PS-90% PC and 30% PS-70% PC. Simulations were performed using GROMACS 2019.4, employing the WEPROM forcefield for peptide modeling and WEPMEM for lipid modeling. For each POPS percentage, four independent replicas were run for 3000 ns. </p> <h1><strong>Contents</strong></h1> <h3>> Abeta_PCPS.zip </h3> <p>This zip file contains three main folders: 0PS, 10PS, and 30PS. These represent different percentages of PS present in the lipid bilayer.</p> <p>Each folder contains:</p> <p>1. Initial structures:<br> - em1.gro: Lipid bilayer without peptides<br> - eq1.gro: Lipid bilayer at 95 Ų area-per-lipid (APL)<br> - em2.gro: Lipid bilayer at 95 Ų APL with 16 peptides<br> - eq2.gro: Final equilibrated structure with peptides (used for production)</p> <p>2. Supporting files:<br> - index.ndx: Index groups for peptides and lipid bilayer<br> - run.pdf: Structure file for VMD visualization</p> <p>3. Four replica folders (replica1 to replica4), each containing:<br> - red.tpr: Binary input for analysis (peptides and lipid bilayer only)<br> - full_trj_pbc.xtc: Trajectory file (peptides and lipid bilayer only, centered in box)</p> <p>Note: The `.tpr` files were created using the `gmx convert-tpr` tool.</p> <p><strong>To access the source files with which these simulations were set-up, and a brief tutorial, see: </strong><a href="https://github.com/suhasgotla/heparin_amyloid_self-assembly">https://github.com/meenaljainumd/PCPS_amyloid_aggregation</a></p>
Aggregated Deidentified Participant Data for the Sole Participant Trials
Open the record for dataset details and reuse information.
Figure 11. N in Phylogenetic analysis of the Niphargus orcinus species- aggregate (Crustacea: Amphipoda: Niphargidae) with description of new taxa
Figure 11. N. dolichopus sp. n., holotype. Pereopods V–VII. Details of pereopod VII.
Figure 1 from: Devigne C, Broly P, Mullier R, Deneubourg J (2012) Aggregation in woodlice: social interaction and density effects. ZooKeys 176: 133-144. https://doi.org/10.3897/zookeys.176.2258
Figure 1 - Experimental set-up.
Figure 23 from: Johansson N, Achterberg C van (2016) Revision of the Palaearctic Gasteruption assectator aggregate, with special reference to Sweden (Hymenoptera, Gasteruptiidae). ZooKeys 615: 73-94. https://doi.org/10.3897/zookeys.615.8857
Figure 23 - Gasteruption nigritarse (Thomson), ♀, habitus dorso-lateral.
Figures 17-18 from: Johansson N, Achterberg C van (2016) Revision of the Palaearctic Gasteruption assectator aggregate, with special reference to Sweden (Hymenoptera, Gasteruptiidae). ZooKeys 615: 73-94. https://doi.org/10.3897/zookeys.615.8857
Figures 17-18 - Gasteruption boreale (Thomson), ♀. 17 habitus lateral 18 habitus dorsal.
Figures 12-13 from: Johansson N, Achterberg C van (2016) Revision of the Palaearctic Gasteruption assectator aggregate, with special reference to Sweden (Hymenoptera, Gasteruptiidae). ZooKeys 615: 73-94. https://doi.org/10.3897/zookeys.615.8857
Figures 12-13 - Lectotype Foenus fumipennis Thomson. 12 habitus lateral 13 labels.
Figure 16 from: Johansson N, Achterberg C van (2016) Revision of the Palaearctic Gasteruption assectator aggregate, with special reference to Sweden (Hymenoptera, Gasteruptiidae). ZooKeys 615: 73-94. https://doi.org/10.3897/zookeys.615.8857
Figure 16 - Lectotype of Trichofoenus breviterebrae Watanabe, habitus lateral.
Figures 14-15 from: Johansson N, Achterberg C van (2016) Revision of the Palaearctic Gasteruption assectator aggregate, with special reference to Sweden (Hymenoptera, Gasteruptiidae). ZooKeys 615: 73-94. https://doi.org/10.3897/zookeys.615.8857
Figures 14-15 - Holotype of Gasteruption margotae Madl. 14 habitus lateral 15 labels.
Artificial intelligence reveals potential Arctic whale aggregation disruption due to climate change
<p>Climate change has been shown to alter the spatial distribution of whales and other marine mammals. Fast changing ocean temperatures may also affect the spatial distribution of whales at a finer scale, namely within populations, including aggregation behaviour. Here, we analyze the impact of climate change on whale aggregation behavior.</p>
India's Aggregate Export Volume Dataset
<p>Data set with Indian aggregate export volume, and various other macroeconomic variables from 2000Q1 - 2019Q4</p>
The datasets of line structured light scanning image of aggregate surface.
<p>We provided a dataset of linear structured light scanning road aggregates, with a total of 1267 images and labels of 7 aggregates, which can be used to train the semantic segmentation network.</p>
Supplementary videos for thesis Chapter 2: "Liposomal aggregates sustain the release of rapamycin and protect cartilage from friction"
<p>Nanoparticle Tracking Analsis videos of irreversible and reversible liposomal aggregates as well as the plain liposome control. The data is also published as part of a pre-print: "https://doi.org/10.1101/2023.03.23.533793".</p>
Raw Data on Marshall properties of asphalt mixtures containing recycled concrete aggregate.
<p>these raw data about the feasibility of using recycled concrete aggregate for the surface layer of asphalt pavement. these will be useful data for transportation Engineers, environmentalists, and researchers for further development </p>
Daily Variability of Platelet Aggregation in Patients With Myocardial Infarction Treated With Prasugrel and Ticagrelor
ClinicalTrials.gov study NCT03454841. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Impact of Dabigatran and Phenprocoumon on ADP Induced Platelet Aggregation in Patients With Atrial Fibrillation
ClinicalTrials.gov study NCT01339819. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect of the Repeated Loading Dose of Clopidogrel and High Dose of Clopidogrel Continuous Therapy on the Platelet Aggregation Inhibition in Patients With Myocardial Infarction Undergoing Intervention
ClinicalTrials.gov study NCT01636180. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Clinical and Radiographic Assessment of Platelet Rich Fibrin and Mineral Trioxide Aggregate as Pulp Capping Biomaterials
ClinicalTrials.gov study NCT04488679. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Safety and Efficacy of Topical TolaSure Targeting Aggregated Mutant Keratin in Severe Epidermolysis Bullosa Simplex
ClinicalTrials.gov study NCT05062070. IPD Sharing: NO. Countries: 1. Publications: 0.
Platelet Aggregation in COVID-19 Patients
ClinicalTrials.gov study NCT06097429. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.