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Supplementary material 1 from: Forti LR, da Silva TRÁ, Toledo LF (2017) The acoustic repertoire of the Atlantic Forest Rocket Frog and its consequences for taxonomy and conservation (Allobates, Aromobatidae). ZooKeys 692: 141-153. https://doi.org/10.3897/zookeys.692.12187
The acoustic repertoire of the Atlantic Forest Rocket Frog (Allobates, Aromobatidae) and its consequences for taxonomy and conservation. : Explanation note: Here, we presented complementary methodology information and additional results with statistical differences of note duration among populations.
FIGURE 2. A in Bird distributional patterns support biogeographical histories and are associated with bioclimatic units in the Atlantic Forest, Brazil
FIGURE 2. A) Most parsimonious area cladogram from the distribution analysis of 331 genera and 823 species of forestdependent birds from 45 localities in the Atlantic Forest and the Amazon. Values of the nodes represent the frequencies of bootstrap replicates (10,000 replicates). B) Representation of cladogram groups on the map; the localities enclosed in gray polygons correspond to group 1, and those enclosed by black polygons correspond to group 2.
FIGURE 4 in Bird distributional patterns support biogeographical histories and are associated with bioclimatic units in the Atlantic Forest, Brazil
FIGURE 4. Distributional patterns of shared unique species in group 2 of the area cladogram in Figure 2 (source: Ridgely et al., 2003).
FIGURE 1 in Bird distributional patterns support biogeographical histories and are associated with bioclimatic units in the Atlantic Forest, Brazil
FIGURE 1. Localities used in the present study. White squares represent the localities of group 1 in the area cladogram of Figure 2; black symbols represent the localities of group 2 with circles in the Amazon and triangles in the Atlantic Forest. The blue lines represent the locations of the rivers proposed as biogeographical barriers in the Atlantic forest.
FIGURE 3 in Bird distributional patterns support biogeographical histories and are associated with bioclimatic units in the Atlantic Forest, Brazil
FIGURE 3. Distributional patterns of shared unique species in group 1 of the area cladogram in Figure 2 (source: Ridgely et al., 2003).
FIGURE 8 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 8. Topology of one of the two most parsimonious trees (of 842 steps) for the genus Brachycephalus. Branch lengths correspond to the number of unambiguous parsimony transformations. Numbers close to nodes are Jackknife absolute frequencies. Nodes without values indicate frequencies above 70%. See Appendix 2 for DNA sequences included in this analysis.
FIGURE 5 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 5. Color variation in Brachycephalus sulfuratus sp. nov. (A) Dorsolateral and (B) ventral views of CFBH 39148, adult male, from município de Cananéia, State of São Paulo. (C) Dorsolateral and (D) ventral views of CFBH 39142, adult male, from município de São Francisco do Sul, State of Santa Catarina. (E) Dorsolateral and (F) ventral views of CFBH 39138, adult male, from município de São Francisco do Sul, State of Santa Catarina. (G) Dorsolateral and (H) ventral views of CFBH 39145, adult female, from município de Joinville, State of Santa Catarina.
FIGURE 7 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 7. Distribution of Brachycephalus sulfuratus sp. nov. along the States of São Paulo (SP), Paraná (PR), and Santa Catarina (SC), Brazil. The star represents the type-locality at município de São Francisco do Sul (SC) and circles represent the paratypes occurrence. The referred specimen from São José dos Pinhais (PR), not included as paratype, is represented by the triangle.
FIGURE 1 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 1. Adult female of Brachycephalus sulfuratus sp. nov. in life. (A) Lateral and (B) ventral views. Holotype, CFBH 39137, from Centro de Estudos e Pesquisas Ambientais da Univille, Vila da Glória, distrito do Saí, município de São Francisco do Sul, State of Santa Catarina, Brazil. SVL 9.8 mm. (Photo by T.H. Condez, 14 November 2014).
FIGURE 4 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 4. Advertisement call of Brachycephalus sulfuratus sp. nov, voucher specimen CFBH 39148, recorded at Parque Estadual da Ilha do Cardoso, município de Cananéia, State of São Paulo, 19 December 2013, 14:25 p.m., air temperature 25°C, air relative humidity 87%. (A) Oscillogram (above) and spectrogram (below) of three consecutive calls, (B) oscillogram (above) and spectrogram (below) of one call composed by the repetition of six notes, and (C) oscillogram (above) and spectrogram (below) of one pulsed note.
FIGURE 6 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 6. Ornamented marks in the cloacal region of Brachycephalus sulfuratus sp. nov. and the morphologically related species Brachycephalus hermogenesi. (A) Ventral view highlighting the inverted v-shaped mark and (B) detail of the cloacal opening in B. sulfuratus sp. nov. (CFBH 39332). (C) Ventral view and (D) detail of the cloacal opening in B. hermogenesi (AAGUFU 0181). Scale bar 2mm.
FIGURE 3 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 3. Adult female of Brachycephalus sulfuratus sp. nov. Holotype, CFBH 39137. (A) Dorsal and (B) lateral views of head, (C) ventral view of left hand and (D) ventral view of left foot.
FIGURE 2 in A new species of flea-toad (Anura: Brachycephalidae) from southern Atlantic Forest, Brazil
FIGURE 2. Preserved adult female of Brachycephalus sulfuratus sp. nov. in (A) dorsal and (B) ventral views. Holotype, CFBH 39137. Scale bar 2 mm.
FIGURE 11 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 11. Paraba multicolor. (A–F) Sagittal sections of the reproductive system: copulatory apparatus (MLP-He 6471-3) (A), opening of the sperm duct into the prostatic vesicle (MLP-He 6471-3) (B), proximal portion of the prostatic vesicle (MLP- He 6471-3) (C), detail of the male system (MLP-He 6471-2) (D), ovary (MLP-He 6471-3) (E), detail of the female atrium (MLP-He 6471-2) (F). Scale bars: A, D: 500µm; B, E: 200µm; C, F: 100µm.
FIGURE 10 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 10. Paraba multicolor. Schematic reconstruction of the copulatory apparatus, in sagittal view (MLP-He 6471-3). Scale bar: 1mm.
FIGURE 12 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 12. Obama ladislavii. (A–B) Photographs of live specimens in dorsal view: MLP-He 7413 (A), MLP-He 7414 (B) (arrow indicates the position of the gonopore). (C) Schematic reconstruction of the copulatory apparatus, in sagittal view (MLP-He 7017). Asterisk indicates the position of cyanophil granular secretion in the middle sagittal plane. (D–H) Sagittal sections of the reproductive system (MLP-He 7017) (asterisk indicates the position of cyanophil granular secretion): copulatory apparatus (D), detail of the proximal portion of the prostatic vesicle (E), detail of the distal portion of the prostatic vesicle (F), para-sagittal section at the level of the male atrium (G), detail of the ascending section of one of the ovovitelline ducts (H). Scale bars: A, B: 10mm, C, D, G: 500µm; E, F, H: 100µm.
FIGURE 7 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 7. Geoplana quagga. (A) Dorsal view of live specimen (MLP-He 7411-2). (B) Detail of the cephalic region of preserved specimen (MLP-He 7412). (C) Dorsal view of preserved specimen (MLP-He 7411-1). (D) Sagittal section of the pharynx (MLP-He 7411-1). (E, F) Sagittal sections of the anterior region (MLP-He 7412): at the level of testes (E), at the level of the ovaries (F). (G) Body region immediately posterior to the pharynx, with nematode larva (MLP-He 7412). Scale bars: A, C: 10mm, B: 1mm, D, G: 500µm, E, F: 200µm.
FIGURE 8 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 8. Geoplana quagga. (A) Schematic reconstruction of the copulatory apparatus, in sagittal view (MLP-He 7412). (B– E) Sagittal sections of the reproductive system: copulatory apparatus (MLP-He 7412) (B), detail of the extrabulbar prostatic vesicle (MLP-He 7411-1) (C), detail of the ejaculatory duct and male atrium (MLP-He 7411-1) (D), detail of male atrium (MLP-He 7411-1) (E). Scale bars: A, B: 500µm, C–E: 100µm.
FIGURE 6 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 6. Imbira negrita sp. nov. Sagittal sections of the reproductive system. (A) Detail of the proximal portion of the prostatic vesicle (arrows indicate prostatic secretion) (holotype). (B) Detail of the male reproductive system (holotype). (C) Copulatory apparatus of the holotype. (D) Copulatory apparatus of paratype 1. (E) Copulatory apparatus of paratype 2. (F) Latero-external portion of the ovary (holotype). (G) Middle portion of the ovary (arrow indicates nematode larva) (holotype). (H) Detail of the female atrium (holotype). In F and G, arrowheads indicate longitudinal parenchymal muscle fibres in discrete bundles. Scale bars: A: 250µm, B–E: 500µm, F, G: 200µm, H: 100µm.
FIGURE 4 in Increasing diversity of land planarians (Platyhelminthes: Geoplanidae) in the Interior Atlantic Forest with the description of two new species and new records from Argentina
FIGURE 4. Imbira negrita sp. nov. (A) Photograph of a live specimen (holotype), in dorsal view. In the inset, the same specimen showing part of the ventral surface. (B) Half of a transverse section at the cephalic region (on the left) (paratype 1) and near the ovaries (on the right) (holotype). Arrowheads indicate longitudinal parenchymal muscle fibres. C Transverse section of the pre-pharyngeal region. (D, E) Transverse sections of the pre-pharyngeal region with details: dorsal to intestine (D), ventral to intestine (E). Scale bars: A: 10mm, B, D, E: 250µm, C: 500µm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.