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2,326 results for “clusters”
Effectiveness of Facility-Based Personalized Maternal Nutrition Counseling in Improving Child Growth and Morbidity up to 18 Months: A Cluster-Randomized Controlled Trial in Rural Burkina Faso.
<p>"Baseline Characteristics.dta": give data on participants first sociodemographic caracteristics and outcome collected during the first follow_up visit.</p> <p>"Follow-up Data.dta": Provide data on all the follow-up visits"</p>
Fractal geometry features of aerosol particle and its contribution to atmospheric optical property: development of Fractal Aerosol Cluster Model and its validation of atmospheric visibility during a heavy haze event
<p>-------------------------<br>Content of the dataset<br>-------------------------<br>****** the experiment case (EXP) ; the control case (CTR) ******</p> <p>1. Meteorological elements.tar contains observational and simulated data for T2, WS, RH, and PM2.5 time series, which can be used to plot Figure 4 and build Table 2</p> <p>2. Planar distribution.tar contains the horizontal spatial distribution data of aerosol extinction coefficients simulated by CTR and EXP for the four typical moments selected in this paper, which can be used to plot Figures 5, 6, and 7</p> <p>3. PM.rar contains the vertical profile data of simulated Particulate Matter concentrations by CTR and EXP during the study period in the paper, which can be utilized for drawing Fig. 11.</p> <p>4. Timeseries.tar contains observational and simulated data for time series of atmospheric visibility and surface shortwave radiation, which can be used to plot Figures 5, 6, 7, 8, S1, and build Table 3</p> <p>5. wrfbiochemi.rar contains the biogenic emissions data for simulation both for CTR and EXP.</p> <p>6. wrffirechemi.rar contains the biomass burning emissions data for simulation both for CTR and EXP.</p> <p>7. wrfchemi.rar contains the Anthropogenic emissions data for simulation both for CTR and EXP.</p> <p>8. The file module_optical_averaging.F contains the main code of the improved visibility model, the Fractal Aerosol Cluster Model</p> <p>(FACM), which is coupled to WRF-Chem and used by EXP. It is located in the chem/ directory and called by optical_driver.F.</p> <pre> </pre> <p> </p> <p>-------------------------</p> <p>Contact information</p> <p>-------------------------</p> <p> </p> <p>Zhenxin Liu</p> <p>liuzhenxin@nuist.edu.cn</p> <p> </p> <p> </p>
Supplementary data for the manuscript, "Comprehensive Assessment of Physiochemical Metrics for the Clustering of Adaptive Immune Repertoires"
<p>This repository contains data and code used in the manuscript "Comparative Assessment of Physiochemical Metrics for the Clustering of Adaptive Immune Receptor Repertoires" by Girgis et al. For additional information regarding how these data were used, please refer to our manuscript.</p> <p>Code is organized per figure in the main text. Each figure folder contains a 'script-inputs' folder and 'script-outputs' folder. The outputs folder is empty and may be populated with graphs and results tables by executing code within the directory. The inputs folder contains some pre-formatted data which may be used in executing code. Most of these inputs may be generated from scratch using raw data (ie the results of Homolig clustering on simulated repertoires) but may require substantial time and/or computational resources. Raw patient data used in Figure 6 (Pancreatic cancer anti-mKRAS TCRB repertoire clustering) and Figure 7 (Rheumatoid arthritis TCRB and IGH repertoires) are not included here. However, several graphs may be reproduced stripped of sequence-specific data. Pancreatic cancer patient repertoire data will be made available on dbGaP,study accession number phs003425.v1.p1. Rheumatoid arthritis patient data will be made available on ImmuneAccess, accession pending.</p> <p>To browse repo, first unzip all subdirectories: </p> <blockquote> <p><code>for f in *.zip; do</code><br><code> unzip "$f"</code><br><code>done</code></p> </blockquote> <p>All non-code files have been compressed to .gz format. To decompress, use: <code>gzip -dr *</code>, or <code>pigz -dr ./raw-data/* </code>for parallel decompression (recommended). </p> <p>Alexander Girgis <br>agirgis3@jhmi.edu <br>July 2025 </p>
Supplementary Material for the paper entitled "Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data"
<p>This repo contain supplementary tables from the manuscript entitled: "Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data". Clustering is a common way to identify cell types in single-cell RNA-sequencing (scRNA-seq) data. Unfortunately, current methods (i) require users to make human-in-the-loop decisions, which adds significant runtime to bioinformatic analyses, and (ii) reuse the same data twice when testing for differentially expressed genes, which can lead to an increased number of false discoveries. In this work, we overcome these limitations with NCLUSION: a Bayesian nonparametric method that simultaneously clusters cells and selects marker genes. NCLUSION operates without user-defined heuristics to set model parameters and leverages variational expectation-maximization (EM) for posterior inference which allows it to scale well up to 1 million cells. By analyzing publicly available datasets, we illustrate that NCLUSION matches the state-of-the-art clustering performance of competing approaches, achieves improved computational efficiency, and directly enables identification of biologically relevant gene sets driving cluster definitions.</p>
Data and R code for cluster analysis and machine learning modelling of favourite places for outdoor recreation
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Fig. 6 in NC-Clustering demonstrates heterospecificity of the cryptic ant species Temnothorax luteus (FOREL, 1874) and T. racovitzai (BONDROIT, 1918) (Hymenoptera: Formicidae)
Fig. 6: Lectotype of Temnothorax racovitzai (BONDROIT, 1918) in lateral view.
Script and data for "rec-1 loss of function increases recombination in the central gene clusters at the expense of autosomal pairing centers"
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[Data from:] A butterfly egg-killing hypersensitive response in Brassica nigra is controlled by a single locus, PEK, containing a cluster of TIR-NBS-LRR receptor genes
<p>Genetic mapping of a HR-like cell death induced by <em>Pieris </em>spp. butterfly eggs in <em>Brassica nigra.</em></p>
The invasive land flatworm Arthurdendyus triangulatus: repeated sequences in the mitogenome, extra-long cox2 gene and paralogous rRNA clusters
<p>Fasta and tbl files for the mitogenomes of various Rhynchodeminae</p>
Integrated Pulmonary Index during procedural sedation and analgesia: a cluster-randomized trial
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Demo data of Northern Cluster in OneNet project
<p>Datasets include in CSV or JSON format examples of Northern cluster’s Estonian implementation of different steps in the flexibility value chain: description of available resources, grid data needed for the bid optimization, list of bids for a specific delivery period, system operator’s purchase offer for the same delivery period, optimisation results of the same delivery period, baselines submitted by the flexibility service provider for the same delivery period, sub-meter measurements submitted by the flexibility service provider for the same delivery period, and settlement results for the same delivery period.</p> <p>Datasets correspond to Northern Cluster Roles <a href="../records/10551238">https://zenodo.org/records/10551238</a> and Business Objects <a href="../records/10809262">https://zenodo.org/records/10809262</a> covering demo Use Cases <a href="../records/10809308">https://zenodo.org/records/10809308</a>.</p>
Data for "Photoinduced hydrogen dissociation in thymine predicted by coupled cluster theory"
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DYNAMIC Tanzania Quality of Care Cluster RCT dataset from the 2nd cross-sectional survey
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Dataset for "Decomposing God Header File via Multi-View Graph Clustering"
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Forecasting the Potential Impact of Urban Expansion on Ecological Networks in Urban Clusters
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Raw Image Data Multicellular Clusters
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USE OF NEW CARBON CLUSTER FULLERENES AS ANTIOXIDANTS IN PROTEIN STORAGE COMPOUNDS USED IN STROKE PREVENTION
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Spatial Distribution and Cluster Analysis of Road Traffic Accidents in Nepal
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Photometric data of the Magellanic Cloud clusters NGC330, NGC1818, NGC1755 and NGC2164
<p>NGC330fig2Milone18.RDMAG, NGC1755.XYM, NGC1818.XYM and NGC2164.XYMAGBe are the photometric data for the Magellanic Cloud clusters NGC330, NGC1755, NGC1818 and NGC2164, respectively. The owner of the data is Antonino Milone. </p> <p>n330_decont.csv, n1818_decont.csv, n1755_decont.csv and n2164_decont.csv are the main-sequence stars employed in the paper "Stellar mergers as the origin of the blue main-sequence band in young star clusters" after decontamination. </p>
Online material to paper "On the dynamical evolution of Cepheids in star clusters"
<p>The description of the movies can be found in the file movie_description.pdf.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.