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2,399 results for “fragmenter”
State-dependent mortality, not behavior, fragments population distribution of a long-lived mammal after ecological disturbance
<p>Data and code used to produce figures and analyses for the peer-reviewed paper "State-dependent mortality, not behavior, fragments population distribution of a long-lived mammal after ecological disturbance". All demographic and GPS data were collected by the authors as part of the Wyoming Range Mule Deer Project, and spatial data were derived from publicly available GIS platforms. </p> <p>Questions about data and code can be directed to rraffer1@uwyo.edu and tlasharr@uwyo.edu.</p> <p> </p>
Quantification and qualification of in-flight fragmentation of bombs from low-viscosity magma
<p>The dataset contains both automatic and manual image analyses of four videos: from (i) fountaining and (ii) spattering activities at the 2021 Tajogaite eruption of Cumbre Vieja volcano, La Palma, Canary Islands, Spain; from the 2021 Mount Etna eruption (iii) fountaining activity, Sicily, Italy); and from Strombolian activity (iv) in 2023 at Stromboli, Aeolian Islands, Italy.</p> <p>This dataset consists of one MATLAB file and 15 CSV files. Fourteen CSV files are named according to the case studies (e.g., T. fountaining, T. spattering, E. fountaining, S. Strombolian), the acquisition mode (Manual or Automatic), the data type (e.g., Collision, Fragmenting, Non-Fragmenting, Total), and specific case details. Notably, the "T.spattering_Manual_Collision" files are split into two categories (e.g., coarser, finer) based on bomb size classification of the colliding-pairs. Additionally, the "E. fountaining_Manual_Collision / Fragmentation" dataset is divided into two regions of interest (ROI1 and ROI2) to reflect separate analyzed areas described in the manuscript. The 15th CSV file, “FragmentingModes_All.csv”, aggregates bomb counts by fragmenting mode across all case studies and corresponds to Figure 3 in the manuscript.</p> <p>Automated analyses were performed on five different frames: four used for measuring bomb velocity and size (saved in the MATLAB file “Fourframes.mat”), and a fifth frame used for measuring bombs velocity, size, and circularity (saved in the CSV files). The MATLAB file contains four matrices, named according to the case studies (e.g., T. fountaining, T. spattering, E. fountaining, S. Strombolian). Each matrix is composed of two columns: the first for velocity and the second for bomb size. The fifth frame’s data is saved in four separate CSV files for each case study, named as “namecasestudies_Auto_Total.csv”, where “namecasestudies” changes to reflect the specific case studies analyzed. Each CSV includes three columns: velocity, bomb size, and bomb circularity respectively.</p> <p>Manual data collected in .csv files include the velocity, size and circularity and additional parameters such as: area, position, major axis and minor axis. In the “Fragmenting” files additional fields detail the fragmenting mode, the number of pyroclasts generated, and the fragmentation direction (upward, transitional, or downward). In the “Collision” files an additional field includes the number of pyroclasts produced.</p> <p>The dataset is graphically represented in the manuscript, particularly in Figures 4,5, 6, and 7. </p>
A new distal fibular fragment of Homo floresiensis and the first quantitative comparative analysis of proximal and distal fibular morphology in this species
Open the record for dataset details and reuse information.
Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza.
<p><span>The dataset contains all the original raw files for images, including protein and RNA blots, DNA and protein sequences used for phylogenetic trees, do plots…, and any other type of source data, sorted by figure and figure panel. Plasmids generated for this study have been deposited in Addgene. They are listed below together with previously existing plasmids obtained from Addgene and used in this study. NGS data has been deposited on NCBI SRA, accession numbers of datasets used in each figure are listed accordingly in this document. Ready-to-visualize using IGV software files of all NGS datasets together with the S. polyrhiza 9509 gene and TE annotations are also provided. The content of each file is:</span></p> <p><span> </span></p> <p><strong><span>FIGURE 3:</span></strong></p> <p><span>- </span><strong><span>3A</span></strong><span>: Picture of Spirodela polyrhiza (used as well in S19A, S26B, D).</span></p> <p><span> </span></p> <p><strong><span>FIGURE 5:</span></strong></p> <p><span>- </span><strong><span>5A:</span></strong><span> Western blot raw TIFF image files for the detection of H3K9me1, H3K9me2 and H3 in Arabidopsis and Spirodela.</span></p> <p><span> </span></p> <p><strong><span>FIGURE 7:</span></strong></p> <p><span>- </span><strong><span>7A:</span></strong><span> Western blot and Coomassie raw TIFF image files for the detection of FHA-AtAGO4_gDNA and FHA-SpAGO4a_cDNA in input and IP fractions from transient expression in <em>N. benthamiana</em>.</span></p> <p><span>- </span><strong><span>7D:</span></strong><span> Raw scan image files of <em>N. benthamiana</em> leaves infiltrated with RUBY or Scarlet hairpin (hpScarlet) and Northern blots raw TIFF image files for the detection of siRNAs produced by RUBY and hpScarlet transiently expressed in <em>N. benthamiana</em>.</span></p> <p><span>- </span><strong><span>7E:</span></strong><span> Raw scan image files of Spirodela cultures in dishes infiltrated with RUBY or Scarlet hairpin (hpScarlet) and Northern blots raw TIFF image files for the detection of siRNAs produced by RUBY and hpScarlet transiently expressed in Spirodela.</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S6:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm DRB proteins, including those identified in the <em>S. polyrhiza</em>9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S7:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm RDR proteins, including those identified in the <em>S. polyrhiza</em>9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S8:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm DCL proteins, including those identified in the <em>S. polyrhiza</em>9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S9:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm AGO proteins, including those identified in the <em>S. polyrhiza</em>9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S10:</span></strong></p> <p><span>- </span><span>DNA sequence of the Spirodela (Sp9509) Chromosome 7 fragment containing the AGO5 cluster.</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S11:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm SHH proteins, including those identified in the <em>S. polyrhiza</em>9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S12:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm Snf2 remodelers proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S13:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm Class V SET-domain containing proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S14:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm DNA methyltransferase proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S15:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm RNA pol large subunit proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S16:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several angiosperm SPT5 and SPT5L proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S17:</span></strong></p> <p><span>- </span><span>Protein sequences, and their alignment, of several animal and plant Uhrf/VIM proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S18:</span></strong></p> <p><span>- </span><strong><span>S18A_B:</span></strong><span> Protein sequences, and their alignment, of several angiosperm SUVH4 and SUVH5/6 proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><span>- </span><strong><span>S18C_D:</span></strong><span> Protein sequences, and their alignment, of several angiosperm ASI1 proteins, including those identified in the <em>S. polyrhiza</em> 9509 genome, used to build phylogenetic tree in fasta (.fa) format. Machine readable tree file is also provided in Nexus format (.nxs).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S19:</span></strong></p> <p><span>- </span><span>Picture of Arabidopsis (used as well in S26 A,C).</span></p> <p><strong><span> </span></strong></p> <p><strong><span>SUPPLEMENTAL FIGURE S24:</span></strong></p> <p><span>- </span><strong><span>S24C:</span></strong> <span>Raw TIFF image files of the coomassie staining of histone acid-extraction protein samples run on SDS-PAGE gel.</span></p> <p><span>- </span><strong><span>S24D:</span></strong><span> Excel files with mass-spectrometry data used for quantification of histone modifications in Arabidopsis and Spirodela.</span></p> <p><span> </span></p> <p><strong><span>SUPPLEMENTAL FIGURE S27:</span></strong></p> <p><span>- </span><strong><span>S27A:</span></strong> <span>Raw czi and TIFF image files of Arabidopsis interphase nuclei stained with DAPI.</span></p> <p><span>- </span><strong><span>S27B:</span></strong> <span>Raw czi and TIFF image files of Spirodela interphase nuclei stained with DAPI.</span></p> <p><span> </span></p> <p><strong><span>SUPPLEMENTAL FIGURE S34:</span></strong></p> <p><span>- </span><span>DNA sequence files (fasta) of TEs used to generate dot plots</span><span>.</span></p> <p><span> </span></p> <p><strong><span>SUPPLEMENTAL FIGURE S35:</span></strong></p> <p><span>- </span><strong><span>S35A:</span></strong> <span>Western blot and Coomassie raw TIFF image files for the detection of FHA-AtAGO4_gDNA and FHA-SpAGO4a_gDNA in input and IP fractions from transient expression in <em>N. benthamiana</em>.</span></p> <p><span>- </span><strong><span>S35B:</span></strong> <span>Intron-annotated genomic DNA sequences of At<em>AGO4 </em>and Sp<em>AGO4a</em> in GenBank (.gbk) format.</span></p> <p><span>- </span><strong><span>S35C:</span></strong><span> Raw image file of EtBr staining of agarose gel electrophoresis of 5’OH-RACE prior to gel excision and cloning.</span></p> <p><span>- </span><strong><span>S35D:</span></strong> <span>Western blot and Coomassie raw TIFF image files for the detection of FHA-AtAGO4_gDNA and FHA-SpAGO4a_cDNA in input and IP fractions from transient expression in <em>N. benthamiana</em>.</span></p> <p><span> </span></p> <p><strong><span>SUPPLEMENTAL FIGURE S36:</span></strong></p> <p><span>- </span><span>DNA sequence files (fasta) of TEs used to generate dot plots</span><span>.</span></p> <p><span> </span></p> <p><strong><span>SUPPLEMENTAL FIGURE S38:</span></strong></p> <p><span>- </span><span>Pictures of Spirodela during pretreatment, manual and vacuum agroinfiltration and RUBY transient expression</span><span>.</span></p> <p><span> </span></p> <p><strong><span>GENOME BROWSER TRACKS:</span></strong></p> <p><span>- </span><span>The following Integrative Genomics Viewer browser (</span><a href="https://igv.org/"><span>https://igv.org</span></a><span>) tracks are provided:</span></p> <p><span>SPIRODELA</span></p> <p><span>· </span><span>Spirodela 9509 genome (this study)</span></p> <p><span>· </span><span>Spirodela gene annotations (V3.0)</span></p> <p><span>· </span><span>Spirodela TE annotations (this study)</span></p> <p><span>· </span><span>Spirodela H3K9me1 as log2[H3K9me1/H3] (this study)</span></p> <p><span>· </span><span>Spirodela H3K9me2 as log2[H3K9me2/H3] (this study)</span></p> <p><span>· </span><span>Spirodela H3K27me3 as log2[H3K27me3/H3] (this study)</span></p> <p><span>· </span><span>Spirodela H3K4me3 as log2[H3K4me3/H3] (this study)</span></p> <p><span>· </span><span>Spirodela H3K9me1 as log2[H3K9me1/H3] for H3K27me1 (this study)</span></p> <p><span>· </span><span>Spirodela H3K9me2 as log2[H3K9me2/H3] ] for H3K27me1 (this study)</span></p> <p><span>· </span><span>Spirodela H3K27me3 as log2[H3K27me3/H3] ] for H3K27me1 (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 21-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 21-nt small RNAs (- strand) (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 22-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 22-nt small RNAs (- strand) (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 24-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Spirodela TraPR purified 24-nt small RNAs (- strand) (this study)</span></p> <p><span>· </span><span>Spirodela Illumina RNA seq coverage (this study)</span></p> <p><span>· </span><span>Spirodela Illumina RNA seq reads (this study)</span></p> <p><span>· </span><span>Spirodela PacBio Iso-seq coverage (this study)</span></p> <p><span>· </span><span>Spirodela PacBio Iso-seq reads (this study)</span></p> <p><span> </span></p> <p><span>ARABIDOPSIS</span></p> <p><span>· </span><span>Arabidopsis Col-0 genome (TAIR10)</span></p> <p><span>· </span><span>Arabidopsis gene annotations (TAIR10)</span></p> <p><span>· </span><span>Arabidopsis TE annotations (TAIR10)</span></p> <p><span>· </span><span>Arabidopsis seedlings H3K9me1 as log2[H3K9me1/H3] (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings H3K9me2 as log2[H3K9me2/H3] (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings H3K27me3 as log2[H3K27me3/H3] (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings H3K4me3 as log2[H3K4me3/H3] (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 21-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 21-nt small RNAs (- strand) (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 22-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 22-nt small RNAs (- strand) (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 24-nt small RNAs (+ strand) (this study)</span></p> <p><span>· </span><span>Arabidopsis seedlings TraPR purified 24-nt small RNAs (- strand) (this study)</span></p> <p><span> </span></p> <p><strong><span>NGS DATASETS:</span></strong></p> <p><span> </span></p> <p><span>All the NGS data generated for this study can be found under the SRA BioProject ID PRJNA1164696. The data was used to generate the following figure panels:</span></p> <p><span>- </span><span>Figures: 1A-H, 2A-F, 3A-E, 4A-H, 5D-J, 6A-G, 7B, 7F-H</span></p> <p><span>- </span><span>Supplemental Figures: S1, S3, S4, S19, S20, S22, S23, S26, S28, S29, S30, S31, S32, S33, S35, S36, S37, S38.</span></p> <p><span> </span></p> <p><span>Publicly available sequencing data (from indicated datasets) was used to generate the following figures:</span></p> <p><span>- </span><span>Figure 2A-F (Arabidopsis gene expression): GSM6892968</span></p> <p><span> </span></p> <p><strong><span>MASS SPECTROMETRY DATA:</span></strong></p> <p><span> </span></p> <p><span>The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD050443. Data was used to generate:</span></p> <p><span>- </span><span>Supplemental Figure 24D</span></p> <p><span> </span></p> <p><strong><span>PLASMIDS:</span></strong></p> <p><span> </span></p> <p><span>The following plasmids generated in this study can be retrieved from Addgene under the following ID#:</span></p> <p><span>- </span><span>p35S:FHA-AtAGO4_gDNA: #216838</span></p> <p><span>- </span><span>p35S:FHA-SpAGO4a_gDNA: #216841</span></p> <p><span>- </span><span>p35S::FHA-SpAGO4a_cDNA: #216842</span></p> <p><span> </span></p> <p><span>The following plasmids used in this study were retrieved from Addgene under the following ID#:</span></p> <p><span>- </span><span>p35S:RUBY: #160908</span></p> <p><span>- </span><span>pZmUbq:RUBY: #160909</span></p> <p><span>- </span><span>p35S:GFP-GUS: #167122</span></p> <p><span> </span></p> <p><span>The following plasmids were a gift from Dr. Marco Incarbone (Max Planck Institute of Molecular Plant Physiology, Potsdam Science Park, Potsdam 14476, Germany).</span></p> <p><span>- </span><span>pAtUBQ:hpScarlet</span></p>
Variation in species' dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss
<p>Simulation data and model belonging to the manuscript '<span>Variation in species’ dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss</span>', by Monique de Jager and Edwin Pos. The folder 'Generated data' holds the generated simulation data. The folder 'Model' contains the 2-dimensional, semi-spatial, near-neutral, individual-based model. A description of the model can be found in the file 'README.md'. </p>
Mathematics and Astronomy [IO Islamic 2166] [fragment] المدخل فى الاحكام
<ul> <li><strong>Mathematics and Astronomy.</strong></li> <li><strong>This manuscript is now IO Islamic 2166 </strong><strong>in the India Office collections.</strong></li> <li><strong>[metadata:</strong><a href="https://de.wikipedia.org/wiki/Otto_Loth"> <strong>Otto Loth, </strong></a><strong><em><a href="http://doi.org/10.5281/zenodo.3923636">A Catalogue of the Arabic Manuscripts in the Library of the India Office</a></em>, (volume 1), no. 733 here with further notations and hyperlinks]</strong>.</li> </ul> <p>733.</p> <p>2166. Size 9<sup>1/4</sup> in. by 6<sup>3/4</sup> in.; foll. 18. From twenty-three to twenty-five lines in a page.</p> <p><strong>I. Foll. 1-17</strong>. The fifth book of an Introduction to Astrology, entitled المدخل فى الاحكام, and ascribed to <a href="http://worldcat.org/identities/lccn-n82216250/">ABU’L-ḤUSAIN ṢÛFÎ</a>. This work is possibly identical with Casiri i., p. 260, no. CMXV., but it is not mentioned elsewhere.</p> <p>The present fragment seems to be the concluding portion of the work.</p> <p>Begins:</p> <p>المقالة الخامسة من المدخل فى الاحكام الذى صنفه الفاضل العالم ابوالحسن عبدالرحمن بن محمد (sic ) الصوفى و هى سبعة فصول الفصل الاول فى ممازجات الكواكب و ذكر طرق الاحكام</p> <p>Well written. Dated <a href="http://dx.doi.org/10.1163/1573-3912_islam_COM_0380">Iṣfahân</a>, beginning of Rabî’ I., 917 [= 1511 CE]. Transcribed by ‘Alî Dôst b. Ḳara Yûsuf.</p> <p><strong>II. Foll. 17<em>v</em>.-18</strong>. Another fragment, probably belonging to the same work. It comprises sections 2 and 3 of book iv.</p> <p>Begins:</p> <p>الفصل الثانى من المقالة الرابعة فى مطرح الشعاع</p> <p>The third section is inscribed:</p> <p>الفصل الثالث من المقالة الرابع (sic ) فى مطرح شعاع الكواكب على مذهب بطلمیوس</p> <p>Written like no. I.</p> <p>Cf. Stewart’s Catal. 105, xvii.</p> <p>[<a href="https://en.wikipedia.org/wiki/Fort_William_College">College of Fort William</a>, 1825.]</p> <p> </p> <p> </p>
Distribution. Fragmented distribution in the Tibetan Plateau in China (Xinjiang, Xizang & Qinghai); one population drifts from S Xinjiang into NW India (Ladakh) and another from Qinghai to Gansu, China. in Bovidae
Distribution. Fragmented distribution in the Tibetan Plateau in China (Xinjiang, Xizang & Qinghai); one population drifts from S Xinjiang into NW India (Ladakh) and another from Qinghai to Gansu, China.
tRNA-derived fragment tRF-Glu49 inhibits cell proliferation, migration and invasion in cervical cancer by targeting FGL1
<p>A transfer RNA (tRNA)-derived fragment was found to be a new possible biological marker and target in carcinoma therapy. However, the effect exerted by tRFs on cervical carcinoma is still unclear. We identify the potential tumor suppressor gene tRF-Glu49 in cervical carcinoma through tRF and ti-RNA microarray investigation. We then demonstrated that tRF-Glu49 showed downregulation within the cervical carcinoma tissue and was associated with less aggressive clinical features and a better prognosis. Phenotypic studies revealed that tRF-Glu49 inhibited cervical cell proliferation, migration, and invasion processes. Mechanistic investigation revealed that tRF-Glu49 directly regulated the oncogene, fibrinogen-like protein-1 (FGL1). In general, according to the result achieved in this study, tRF-Glu49 can modulate cervical cell proliferation, migration, and invasion processes through the target process for FGL1, and tRF-Glu49 is likely to be a possible prognostic biological marker in patients with cervical carcinoma.</p>
FIGURE 55. Tab. VI in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 55. Tab. VI, Portunus puber, now Necora puber (Linnaeus, 1767) by James Sowerby from Leach (1816) Malacostraca Podophthalma Britanniae, No. X. Closeup of non-red eyes. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 57. Tab. VI in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 57. Tab. VI, Portunus puber, now Necora puber (Linnaeus, 1767) by James Sowerby from Leach (1816) Malacostraca Podophthalma Britanniae, No. X. Rothschild Library, NHM Tring, displaying closeup red eye colouration. Image by Lucie Goodayle, NHM Photo Unit.
FIGURE 56. Tab. VI in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 56. Tab. VI, Portunus puber, now Necora puber (Linnaeus, 1767) by James Sowerby from Leach (1816) Malacostraca Podophthalma Britanniae, No. X. Rothschild Library, NHM Tring, displaying red colouration. Image by Lucie Goodayle, NHM Photo Unit.
FIGURE 54 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 54. Tab. XLV, [figs. 1–3], Squilla mantis (Linnaeus, 1758); [fig. 4], Squilla desmarestii, now Rissoides desmaresti (Risso, 1816) by George Brettingham Sowerby, II from Sowerby, G.B. II in Leach (1875) Malacostraca Podophthalma Britanniae, Nos. XVIII & XIX. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 53 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 53. Tab. XLIV, Athanas nitescens (Leach, 1814) by James Sowerby from Leach (1817) Malacostraca Podophthalma Britanniae, No. XIV. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 50 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 50. Tab. XLI, Processa canaliculata Leach, 1815 by James Sowerby from Leach (1815) Malacostraca Podophthalma Britanniae, No. IV. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 49. Tab. XL in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 49. Tab. XL, Pandalus annulicornis, now Pandalus montagui Leach, 1814 by James Sowerby from Leach (1815) Malacostraca Podophthalmata Britanniae, No. II. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 51 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 51. Tab. XLII, Penaeus trisulcatus, now Penaeus kerathurus (Forskål, 1775) by James Sowerby from Leach (1816) Malacostraca Podophthalma Britanniae, No. IX. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 52 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 52. Tab. XLIII, [figs. 1–10], Palaemon serratus (Pennant, 1777); [figs. 11–13], Palaemon squilla, now Palaemon adspersus Rathke, 1836; [figs. 14–16], Palaemon varians Leach, 1814 by James Sowerby from Leach (1816) Malacostraca Podophthalma Britanniae, No. IX. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 48 in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 48. Tab. XXXIX, Hippolyte sowerbaei, now Spirontocaris spinus (Sowerby, 1805) by James Sowerby from Leach (1817) Malacostraca Podophthalma Britanniae, No. XVI. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 46. Tab. XXXVII.C in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 46. Tab. XXXVII.C, [fig. 1], Cragnon fasciatus (sic), now Philocheras fasciatus (Risso, 1816); [fig. 2], Alpheus ruber, now Alpheus glaber (Olivi, 1792); [fig. 3], Pasiphaea sivado (Risso, 1816); [figs. 4–6], Mysis spinulosus, now Praunus flexuosus (Müller, 1776); [figs. 7–8], Mysis integer now Neomysis integer (Leach, 1814) by George Brettingham Sowerby, II from Sowerby, G.B. II in Leach (1875) Malacostraca Podophthalma Britanniae, Nos. XVIII & XIX. Image by Jonathan Jackson, NHM Photo Unit.
FIGURE 45. Tab. XXXVII.B in Malacostraca Podophthalmata Britanniae 1815-1875 by William Elford Leach and the history of its fragmented publication (Crustacea: Decapoda)
FIGURE 45. Tab. XXXVII.B, Crangon vulgaris, now Crangon crangon (Linnaeus, 1758) by James Sowerby from Leach (1817) Malacostraca Podophthalma Britanniae, No. XV. Image by Jonathan Jackson, NHM Photo Unit.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.