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1,195
datasets available to search
ShareScore release 0.9.0
Dataset results
1,195 results for “Cancer Genomics”
Analysis of 3-dimensional genome of exhausted CD8+ T cells reveals a critical role of IRF8 in their terminal differentiation in cancer [RNA]
GEO Series GSE277972. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of gene expression altered by KLRK1 (NKG2D) ectopically expressed in MCF-7 breast cancer cells
GEO Series GSE53961. Homo sapiens. 8 samples. Type: Expression profiling by array.
Genome-wide maps of chromatin modifications in a breast cancer cell line
GEO Series GSE103887. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-scale CRISPR-Cas9 screen of OVCAR3 and CCL218 cancer cells with or without hydroxychloroquine
GEO Series GSE245215. Homo sapiens. 40 samples. Type: Other.
Multi-omic study of genome-edited human colonoids reveal patterns of microRNA regulation specific to different colorectal cancer mutation profiles
GEO Series GSE231436. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing.
Deterioration of multi-level 3D genome organization during breast cancer progression
GEO Series GSE246689. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Integration of genomic and clinical data to predict endometrioid endometrial cancer recurrence
GEO Series GSE216872. Homo sapiens. 61 samples. Type: Expression profiling by high throughput sequencing.
Functional dissection of MIEN1 trans-regulation provides new evidence for colorectal cancer genome editing-based therapeutics
GEO Series GSE123734. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide identification of AP-2α by ChIP-chip in breast cancer cell line MCF7
GEO Series GSE128589. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Isolated and characterized colorectal cancer stem cells and normal stem cells isolated from colorectal cancer tissues and normal colon tissues by whole genome expression microarray
GEO Series GSE160988. Homo sapiens. 12 samples. Type: Expression profiling by array.
A Cancer rainbow mouse for visualizing the functional genomics of field cancerization
GEO Series GSE132402. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of gene expression in bladder cancer cell lines 253JB-V and UM-UC13 exposed to bortezomib
GEO Series GSE46132. Homo sapiens. 8 samples. Type: Expression profiling by array.
Analysis of HER2 genomic binding in breast cancer cells identifies a global role in direct gene regulation
GEO Series GSE79778. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state in gastric cancer with malignant ascites [ChIP-seq]
GEO Series GSE162213. Homo sapiens. 176 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Childhood Cancer Data Initiative (CCDI): Comprehensive Genomic Sequencing of Pediatric Cancer Cases (CMRI/KUCC)
This study provides paired tumor normal genomic sequencing data from approximately 200 children with cancer, including both solid tumors and leukemias, done by the Children's Mercy Research Institute (CMRI) and University of Kansas Cancer Center (KUCC). These data include whole genome sequencing, whole exome sequencing, bulk RNA sequencing, and single-cell RNA and ATAC sequencing. Additional phenotypic, pathologic, and genetic data, gathered clinically for these samples, are also provided.
Feasibility and Clinical Utility of Whole Genome Profiling in Pediatric and Young Adult Cancers
Comprehensive Whole Genome Sequencing and Whole Transcriptome (RNASeq) analyses from 114 pediatric patients at Memorial Sloan Kettering. This dataset was used as a prospective clinical utility and feasibility study. By using our Isabl infrastructure for precision medicine, we developed a 2-week end-to-end pipeline to analyze cfDNA, WGS and WTS, which we refer to as cWGTS.
Cancer Genome Characterization Initiative (CGCI)
The Cancer Genome Characterization Initiative (CGCI) uses molecular characterization to uncover distinct features of rare cancers. Current projects perform comprehensive molecular cataloging of HIV+ and other rare adult and pediatric cancers. The research community can use CGCI data to gain insights into the underlying mechanisms of these cancers and identify potential therapeutic targets.
Radiation-related Genomic Profile of Papillary Thyroid Cancer after the Chernobyl Accident
The April 26, 1986 accident at the Chernobyl nuclear power plant in northern Ukraine resulted in the release of radioactive contaminants, which were deposited in the surrounding areas in Ukraine, Belarus, and Russia. The main radiation-related health effect resulting from these exposures is the increased occurrence of thyroid cancer among individuals who were children at the time of the accident or born shortly thereafter. The purpose of this study was to conduct a comprehensive genomic landscape analysis of papillary thyroid tumors arising in individuals who were exposed as children to radioactive iodine (I-131) from the Chernobyl nuclear power plant accident.
The Cancer Genome Atlas (TCGA)
The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types. This joint effort between NCI and the National Human Genome Research Institute began in 2006, bringing together researchers from diverse disciplines and multiple institutions.
PedcBioPortal for Integrated Childhood Cancer Genomics
The PedcBioPortal contains data from close to 400 cancer genomics studies. This dataset only includes cases under the age of 40 years old.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.